Strain Fitness in Sphingobium sp. HT1-2 around GFF4292

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,300,925	-		GFF4290	0.11	-1.3
4,300,925	-		GFF4290	0.11	-1.7
4,300,925	-		GFF4290	0.11	+0.4
4,300,926	+		GFF4290	0.11	-0.6
4,300,946	+		GFF4290	0.16	-0.3
4,300,951	+		GFF4290	0.17	+1.1
4,300,951	+		GFF4290	0.17	-0.3
4,300,951	+		GFF4290	0.17	-1.0
4,300,951	+		GFF4290	0.17	-0.8
4,300,959	-		GFF4290	0.19	+0.3
4,300,973	+		GFF4290	0.22	+0.4
4,300,985	+		GFF4290	0.25	-0.1
4,300,987	-		GFF4290	0.25	-0.8
4,300,991	-		GFF4290	0.26	-1.3
4,300,996	+		GFF4290	0.27	-1.0
4,301,003	-		GFF4290	0.29	-3.1
4,301,004	-		GFF4290	0.29	+0.6
4,301,034	-		GFF4290	0.36	-0.5
4,301,050	+		GFF4290	0.39	-0.7
4,301,064	+		GFF4290	0.42	-0.6
4,301,065	+		GFF4290	0.43	-1.9
4,301,071	-		GFF4290	0.44	-0.5
4,301,071	-		GFF4290	0.44	+1.1
4,301,128	+		GFF4290	0.57	-0.2
4,301,133	+		GFF4290	0.58	-1.3
4,301,136	-		GFF4290	0.58	-0.2
4,301,190	-		GFF4290	0.70	-1.0
4,301,200	+		GFF4290	0.73	-0.7
4,301,200	+		GFF4290	0.73	+0.4
4,301,200	+		GFF4290	0.73	+1.0
4,301,200	+		GFF4290	0.73	+1.2
4,301,200	+		GFF4290	0.73	-0.7
4,301,208	-		GFF4290	0.74	-2.1
4,301,208	-		GFF4290	0.74	-0.6
4,301,215	+		GFF4290	0.76	-0.4
4,301,215	+		GFF4290	0.76	+1.6
4,301,215	+		GFF4290	0.76	-1.3
4,301,215	+		GFF4290	0.76	-1.4
4,301,215	+		GFF4290	0.76	+0.5
4,301,215	+		GFF4290	0.76	-0.6
4,301,223	-		GFF4290	0.78	+0.2
4,301,223	-		GFF4290	0.78	-0.0
4,301,223	-		GFF4290	0.78	-0.7
4,301,223	-		GFF4290	0.78	-2.2
4,301,223	-		GFF4290	0.78	+0.2
4,301,223	-		GFF4290	0.78	-1.5
4,301,223	-		GFF4290	0.78	+1.1
4,301,223	-		GFF4290	0.78	-1.2
4,301,223	-		GFF4290	0.78	-1.6
4,301,223	-		GFF4290	0.78	-1.3
4,301,223	-		GFF4290	0.78	-2.7
4,301,223	-		GFF4290	0.78	-0.5
4,301,234	+		GFF4290	0.80	-1.2
4,301,254	+		GFF4290	0.85	-0.0
4,301,254	+		GFF4290	0.85	-1.5
4,301,256	+		GFF4290	0.85	-1.5
4,301,256	+		GFF4290	0.85	-0.8
4,301,261	+		GFF4290	0.86	-0.6
4,301,261	+		GFF4290	0.86	-0.8
4,301,261	+		GFF4290	0.86	-0.9
4,301,261	+		GFF4290	0.86	-0.1
4,301,261	+		GFF4290	0.86	-0.5
4,301,266	+		GFF4290	0.87	-1.6
4,301,269	-		GFF4290	0.88	+0.0
4,301,269	-		GFF4290	0.88	-0.9
4,301,269	-		GFF4290	0.88	-0.7
4,301,270	+		GFF4290	0.88	-0.8
4,301,270	+		GFF4290	0.88	-2.4
4,301,270	+		GFF4290	0.88	-0.3
4,301,274	-		GFF4290	0.89	-1.3
4,301,274	-		GFF4290	0.89	+0.2
4,301,274	-		GFF4290	0.89	+0.1
4,301,276	-		GFF4290	0.90	+1.1
4,301,278	-				-1.1
4,301,285	+				-1.0
4,301,290	+				-1.2
4,301,290	+				+0.2
4,301,298	-				-1.3
4,301,298	-				+1.2
4,301,298	-				-1.5
4,301,298	-				-0.1
4,301,298	-				-0.3
4,301,298	-				+0.3
4,301,298	-				-0.6
4,301,298	-				+0.5
4,301,298	-				-0.3
4,301,298	-				+0.8
4,301,303	+				-2.0
4,301,311	-				-0.7
4,301,313	+				-0.2
4,301,355	-				-0.8
4,301,392	+				-1.9
4,301,392	+				-1.4
4,301,392	+				-2.4
4,301,392	+				+2.0
4,301,392	+				-2.1
4,301,392	+				-1.5
4,301,392	+				+0.7
4,301,392	+				-0.7
4,301,392	+				-0.3
4,301,392	+				-0.1
4,301,392	+				+0.5
4,301,392	+				+2.0
4,301,392	+				-0.0
4,301,392	+				-0.5
4,301,392	+				-0.5
4,301,392	+				-1.2
4,301,392	+				-0.2
4,301,392	+				-0.7
4,301,392	+				-1.1
4,301,400	-				-1.0
4,301,400	-				-0.8
4,301,400	-				-1.1
4,301,400	-				-2.2
4,301,400	-				+0.4
4,301,400	-				-0.8
4,301,400	-				-0.5
4,301,400	-				-0.9
4,301,400	-				+0.7
4,301,400	-				-0.7
4,301,400	-				+1.1
4,301,400	-				-2.4
4,301,400	-				-0.8
4,301,400	-				+1.3
4,301,400	-				+1.6
4,301,407	+				+0.2
4,301,420	-				+1.8
4,301,432	+				+1.1
4,301,432	+				-0.9
4,301,432	+				-0.5
4,301,432	+				-1.2
4,301,440	-				+0.4
4,301,440	-				-0.6
4,301,459	+		GFF4291	0.11	+0.4
4,301,464	+		GFF4291	0.12	+0.3
4,301,488	+		GFF4291	0.17	-0.1
4,301,488	+		GFF4291	0.17	+1.7
4,301,492	-		GFF4291	0.18	+0.8
4,301,495	+		GFF4291	0.18	-0.8
4,301,495	+		GFF4291	0.18	+0.2
4,301,495	+		GFF4291	0.18	-1.0
4,301,496	-		GFF4291	0.19	+0.3
4,301,496	-		GFF4291	0.19	-0.0
4,301,503	-		GFF4291	0.20	-1.3
4,301,505	+		GFF4291	0.20	-0.5
4,301,513	-		GFF4291	0.22	-1.3
4,301,539	-		GFF4291	0.28	-1.0
4,301,539	-		GFF4291	0.28	-1.8
4,301,583	-		GFF4291	0.37	+1.0
4,301,601	+		GFF4291	0.40	-0.1
4,301,601	+		GFF4291	0.40	-0.8
4,301,601	+		GFF4291	0.40	+0.6
4,301,601	+		GFF4291	0.40	-0.1
4,301,601	+		GFF4291	0.40	+1.9
4,301,609	-		GFF4291	0.42	+1.1
4,301,609	-		GFF4291	0.42	-1.4
4,301,609	-		GFF4291	0.42	+0.5
4,301,609	-		GFF4291	0.42	+1.1
4,301,609	-		GFF4291	0.42	-1.7
4,301,624	+		GFF4291	0.45	-0.8
4,301,634	+		GFF4291	0.47	-1.6
4,301,642	-		GFF4291	0.49	-0.7
4,301,648	+		GFF4291	0.50	-2.1
4,301,653	+		GFF4291	0.51	-2.1
4,301,653	+		GFF4291	0.51	-0.8
4,301,653	-		GFF4291	0.51	-0.3
4,301,658	+		GFF4291	0.52	-0.0
4,301,661	-		GFF4291	0.53	-1.4
4,301,661	-		GFF4291	0.53	-0.3
4,301,661	-		GFF4291	0.53	+0.9
4,301,674	+		GFF4291	0.56	+0.4
4,301,678	-		GFF4291	0.56	-0.6
4,301,678	-		GFF4291	0.56	-0.4
4,301,683	-		GFF4291	0.57	-1.6
4,301,683	-		GFF4291	0.57	-0.6
4,301,691	+		GFF4291	0.59	+0.3
4,301,726	-		GFF4291	0.66	+0.4
4,301,727	+		GFF4291	0.67	+0.2
4,301,731	+		GFF4291	0.68	-1.7
4,301,737	-		GFF4291	0.69	-0.3
4,301,737	-		GFF4291	0.69	-1.3
4,301,737	-		GFF4291	0.69	+1.6
4,301,752	+		GFF4291	0.72	+0.2
4,301,753	-		GFF4291	0.72	-1.8
4,301,757	-		GFF4291	0.73	-1.9
4,301,757	-		GFF4291	0.73	-0.1
4,301,757	-		GFF4291	0.73	+2.0
4,301,789	+		GFF4291	0.80	-1.9
4,301,797	-		GFF4291	0.81	-0.0
4,301,806	+		GFF4291	0.83	+2.2
4,301,813	-		GFF4291	0.85	+0.7
4,301,813	-		GFF4291	0.85	+1.2
4,301,920	+				-0.5
4,301,928	-				-2.1
4,301,928	-				-2.1
4,301,928	-				-0.3
4,301,938	-				-0.6
4,301,940	+				-0.7
4,301,948	-				-3.2
4,301,950	+				-3.9
4,301,950	+				-0.8
4,301,953	-				-0.1
4,301,955	+				-0.5
4,301,963	-				+0.0
4,301,963	-				+1.5
4,302,024	+		GFF4292	0.19	-0.6
4,302,032	-		GFF4292	0.21	-1.9
4,302,032	-		GFF4292	0.21	-0.5
4,302,032	-		GFF4292	0.21	-1.3
4,302,044	+		GFF4292	0.23	-2.3
4,302,047	+		GFF4292	0.23	-1.7
4,302,054	+		GFF4292	0.25	-1.3
4,302,054	+		GFF4292	0.25	-0.3
4,302,055	-		GFF4292	0.25	-1.7
4,302,060	-		GFF4292	0.26	-0.9
4,302,062	-		GFF4292	0.26	-0.6
4,302,062	-		GFF4292	0.26	-0.7
4,302,069	+		GFF4292	0.27	+0.4
4,302,080	+		GFF4292	0.29	-2.1
4,302,088	-		GFF4292	0.30	+0.1
4,302,090	+		GFF4292	0.31	-1.7
4,302,090	+		GFF4292	0.31	-1.1
4,302,090	+		GFF4292	0.31	-1.5
4,302,090	+		GFF4292	0.31	-0.6
4,302,098	-		GFF4292	0.32	-2.2
4,302,098	-		GFF4292	0.32	-0.2
4,302,098	-		GFF4292	0.32	+0.2
4,302,098	-		GFF4292	0.32	-1.3
4,302,098	-		GFF4292	0.32	-1.5
4,302,098	-		GFF4292	0.32	+0.2
4,302,170	-		GFF4292	0.45	-0.1
4,302,175	+		GFF4292	0.45	-1.2
4,302,176	+		GFF4292	0.46	+0.3
4,302,176	+		GFF4292	0.46	+1.7
4,302,181	+		GFF4292	0.46	-0.8
4,302,184	-		GFF4292	0.47	-0.2
4,302,184	-		GFF4292	0.47	-1.4
4,302,185	+		GFF4292	0.47	-1.1
4,302,199	+		GFF4292	0.49	+0.5
4,302,206	+		GFF4292	0.51	-1.8
4,302,206	+		GFF4292	0.51	-1.0
4,302,206	+		GFF4292	0.51	-0.8
4,302,214	-		GFF4292	0.52	-0.6
4,302,214	-		GFF4292	0.52	-1.3
4,302,216	+		GFF4292	0.52	-1.3
4,302,224	-		GFF4292	0.54	-0.1
4,302,224	-		GFF4292	0.54	+0.6
4,302,224	-		GFF4292	0.54	+1.0
4,302,224	-		GFF4292	0.54	-0.7
4,302,224	-		GFF4292	0.54	-1.9
4,302,224	-		GFF4292	0.54	-2.4
4,302,224	-		GFF4292	0.54	-0.3
4,302,236	+		GFF4292	0.56	+1.2
4,302,253	-		GFF4292	0.59	+0.0
4,302,258	+		GFF4292	0.60	-0.6
4,302,262	+		GFF4292	0.60	+0.1
4,302,271	-		GFF4292	0.62	-0.9
4,302,289	-		GFF4292	0.65	+0.8
4,302,315	+		GFF4292	0.69	+0.2
4,302,323	-		GFF4292	0.71	-0.9
4,302,323	-		GFF4292	0.71	+1.0
4,302,323	-		GFF4292	0.71	+0.2
4,302,323	-		GFF4292	0.71	-0.2
4,302,325	-		GFF4292	0.71	-1.9
4,302,342	+		GFF4292	0.74	+1.3
4,302,342	+		GFF4292	0.74	-0.8
4,302,343	-		GFF4292	0.74	+0.4
4,302,343	-		GFF4292	0.74	-0.4
4,302,350	-		GFF4292	0.75	-0.2
4,302,350	-		GFF4292	0.75	-0.7
4,302,350	-		GFF4292	0.75	-0.5
4,302,355	+		GFF4292	0.76	-1.6
4,302,363	-		GFF4292	0.78	-0.5
4,302,374	+		GFF4292	0.80	-2.1
4,302,387	+		GFF4292	0.82	+0.5
4,302,424	-		GFF4292	0.88	-0.6
4,302,424	-		GFF4292	0.88	-1.7
4,302,441	-				+0.8
4,302,441	-				-1.7
4,302,443	+				-0.4
4,302,447	-				-0.8
4,302,453	-				+0.7
4,302,456	+				-0.8
4,302,464	-				-0.6
4,302,464	-				-0.9
4,302,464	-				-0.7
4,302,471	+				-1.8
4,302,471	+				+0.7
4,302,474	+				-1.3
4,302,479	+				-1.3
4,302,479	+				-0.9
4,302,479	+				-1.7
4,302,479	+				-0.8
4,302,479	+				-1.0
4,302,479	+				-1.2
4,302,482	-				+0.8
4,302,487	-				-1.5
4,302,487	-				-0.2
4,302,534	+				+0.3
4,302,534	+				+0.8
4,302,536	-				-1.3
4,302,544	-				-0.5
4,302,560	-				-1.0
4,302,567	+				+0.7
4,302,568	+				-1.5
4,302,576	-				+0.8
4,302,578	+				+1.4
4,302,578	+				-1.0
4,302,586	-				-1.3
4,302,586	-				-1.8
4,302,596	+				-1.9
4,302,596	+				-0.2
4,302,596	-				-1.3
4,302,598	+				-0.4
4,302,604	-				-0.8
4,302,604	-				-0.3
4,302,606	-				+1.1
4,302,610	+				-0.3
4,302,613	-				-1.3
4,302,613	-				+0.8
4,302,618	+		GFF4293	0.10	-2.0
4,302,634	-		GFF4293	0.18	-1.5
4,302,707	+		GFF4293	0.50	-0.2
4,302,715	+		GFF4293	0.54	-1.3
4,302,722	+		GFF4293	0.57	+0.7
4,302,735	-		GFF4293	0.63	-0.3
4,302,775	+		GFF4293	0.81	-0.6
4,302,777	+		GFF4293	0.82	-1.9
4,302,777	+		GFF4293	0.82	-1.2
4,302,784	+		GFF4293	0.85	+0.3
4,302,794	+				-0.8
4,302,794	+				+0.1
4,302,802	-				+0.5
4,302,808	-				-0.1
4,302,827	-				+0.2
4,302,829	+				-0.0
4,302,849	+		GFF4294	0.10	-0.2
4,302,849	+		GFF4294	0.10	-0.2
4,302,857	-		GFF4294	0.13	-0.7
4,302,863	+		GFF4294	0.15	-0.6
4,302,871	-		GFF4294	0.18	+0.3
4,302,884	+		GFF4294	0.22	-0.4
4,302,927	-		GFF4294	0.38	-1.0
4,302,940	-		GFF4294	0.42	+0.3
4,302,944	+		GFF4294	0.44	+0.8
4,302,944	+		GFF4294	0.44	-1.5
4,302,944	+		GFF4294	0.44	-0.7
4,302,945	-		GFF4294	0.44	-0.4
4,302,952	-		GFF4294	0.46	+1.0
4,302,952	-		GFF4294	0.46	-1.0
4,302,952	-		GFF4294	0.46	-0.6
4,302,962	-		GFF4294	0.50	-1.6
4,302,975	-		GFF4294	0.54	+0.9
4,302,977	+		GFF4294	0.55	-1.6
4,302,983	+		GFF4294	0.57	-0.4
4,302,983	+		GFF4294	0.57	+0.3
4,302,991	-		GFF4294	0.60	-0.3
4,302,996	+		GFF4294	0.62	-0.8
4,303,000	+		GFF4294	0.63	-0.1
4,303,000	+		GFF4294	0.63	-0.9
4,303,008	-		GFF4294	0.66	+0.1
4,303,062	-		GFF4294	0.85	-2.0
4,303,074	-		GFF4294	0.89	+0.5
4,303,090	+				-0.5
4,303,106	+				-0.3
4,303,106	+				-1.2
4,303,106	+				-1.7
4,303,106	+				-0.3
4,303,106	+				-1.8
4,303,106	+				-0.9
4,303,106	+				-1.2
4,303,106	+				-0.0
4,303,106	+				-0.2
4,303,106	+				-1.5
4,303,106	+				-1.1
4,303,106	+				-0.5
4,303,108	-				+0.5
4,303,114	-				-1.5
4,303,114	-				-1.2
4,303,114	-				-0.8
4,303,114	-				-0.8
4,303,114	-				+0.2
4,303,114	-				-1.2
4,303,114	-				-0.5
4,303,114	-				-0.9
4,303,114	-				-0.5
4,303,114	-				-0.5
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4,303,114	-				+1.4
4,303,114	-				+0.3
4,303,114	-				+0.3
4,303,119	+				-1.2
4,303,121	-				-0.8
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4,303,139	-				-0.6
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4,303,147	+				-1.1
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4,303,155	-				-0.7
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4,303,490	-		GFF4295	0.55	-1.9
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