Strain Fitness in Sphingobium sp. HT1-2 around GFF4262

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
4,276,238	+				-1.9
4,276,271	-				-1.6
4,276,276	-				-1.5
4,276,281	+				+0.3
4,276,290	+				-1.8
4,276,290	+				-1.9
4,276,298	-				-0.6
4,276,299	-				-1.5
4,276,315	-				+1.3
4,276,350	-				+0.7
4,276,351	-				-0.7
4,276,353	+				-1.0
4,276,353	+				-1.8
4,276,353	+				+0.5
4,276,361	-				-0.8
4,276,361	-				+0.4
4,276,361	-				+0.9
4,276,361	-				+0.6
4,276,368	+				-1.2
4,276,368	+				+0.3
4,276,368	+				-1.0
4,276,387	+				-1.6
4,276,387	+				-2.0
4,276,391	-				+1.0
4,276,489	-				+1.0
4,276,495	+				-1.4
4,276,503	-				-0.6
4,276,536	+		GFF4261	0.15	-1.0
4,276,538	-		GFF4261	0.15	+1.2
4,276,539	-		GFF4261	0.16	+0.6
4,276,548	+		GFF4261	0.17	+0.3
4,276,561	+		GFF4261	0.19	+0.5
4,276,561	+		GFF4261	0.19	-1.2
4,276,561	+		GFF4261	0.19	-0.7
4,276,569	-		GFF4261	0.21	-0.5
4,276,569	-		GFF4261	0.21	-2.0
4,276,598	-		GFF4261	0.26	-0.0
4,276,598	-		GFF4261	0.26	-0.2
4,276,627	+		GFF4261	0.31	+0.1
4,276,632	+		GFF4261	0.32	+1.6
4,276,638	-		GFF4261	0.33	-1.8
4,276,642	+		GFF4261	0.34	+0.1
4,276,663	-		GFF4261	0.37	-1.0
4,276,663	-		GFF4261	0.37	-1.0
4,276,663	-		GFF4261	0.37	+0.2
4,276,673	+		GFF4261	0.39	-0.1
4,276,687	-		GFF4261	0.41	-2.0
4,276,727	+		GFF4261	0.48	-0.0
4,276,727	+		GFF4261	0.48	-0.8
4,276,727	+		GFF4261	0.48	-0.8
4,276,727	+		GFF4261	0.48	-0.9
4,276,727	+		GFF4261	0.48	-0.9
4,276,732	+		GFF4261	0.49	-2.0
4,276,732	+		GFF4261	0.49	+0.1
4,276,732	+		GFF4261	0.49	-1.7
4,276,735	-		GFF4261	0.50	-0.0
4,276,735	-		GFF4261	0.50	-0.3
4,276,735	-		GFF4261	0.50	-1.5
4,276,735	-		GFF4261	0.50	+0.8
4,276,735	-		GFF4261	0.50	-1.4
4,276,735	-		GFF4261	0.50	-0.1
4,276,735	-		GFF4261	0.50	-1.5
4,276,737	+		GFF4261	0.50	-0.5
4,276,737	+		GFF4261	0.50	-1.6
4,276,740	-		GFF4261	0.51	-1.6
4,276,740	-		GFF4261	0.51	-0.5
4,276,741	+		GFF4261	0.51	-1.4
4,276,745	-		GFF4261	0.51	-2.3
4,276,750	-		GFF4261	0.52	-0.5
4,276,769	-		GFF4261	0.56	-0.5
4,276,773	+		GFF4261	0.56	-1.0
4,276,775	+		GFF4261	0.57	-2.0
4,276,777	-		GFF4261	0.57	-1.1
4,276,777	-		GFF4261	0.57	-0.9
4,276,824	-		GFF4261	0.65	-1.2
4,276,827	+		GFF4261	0.66	-2.5
4,276,827	+		GFF4261	0.66	-0.7
4,276,854	+		GFF4261	0.71	-0.9
4,276,854	-		GFF4261	0.71	-0.2
4,276,859	-		GFF4261	0.71	-0.9
4,276,862	-		GFF4261	0.72	+0.7
4,276,862	-		GFF4261	0.72	-0.0
4,276,866	+		GFF4261	0.73	+0.7
4,276,873	+		GFF4261	0.74	+0.9
4,276,875	+		GFF4261	0.74	+0.4
4,276,875	+		GFF4261	0.74	+0.1
4,276,880	+		GFF4261	0.75	-1.7
4,276,883	-		GFF4261	0.76	+0.1
4,276,883	-		GFF4261	0.76	+0.0
4,276,906	+		GFF4261	0.80	-0.5
4,276,912	+		GFF4261	0.81	-0.8
4,276,914	-		GFF4261	0.81	-1.7
4,276,920	-		GFF4261	0.82	-1.6
4,276,924	-		GFF4261	0.83	-0.8
4,276,924	-		GFF4261	0.83	-1.7
4,276,936	+		GFF4261	0.85	-0.8
4,276,936	+		GFF4261	0.85	-1.5
4,276,936	+		GFF4261	0.85	-0.0
4,276,981	+				-0.8
4,276,993	+				+1.7
4,277,026	+				-1.9
4,277,026	+				-1.1
4,277,036	-				+0.2
4,277,041	-				-1.3
4,277,098	+				-0.7
4,277,102	+				+0.5
4,277,120	-				-1.6
4,277,136	+				-0.5
4,277,146	+				+0.9
4,277,151	+				+0.2
4,277,166	+				+1.2
4,277,187	-				-1.1
4,277,211	-				+0.1
4,277,213	-				-0.5
4,277,213	-				+0.5
4,277,215	+				+0.4
4,277,215	+				-1.5
4,277,247	+				-1.5
4,277,271	+				+0.9
4,277,277	+				-1.2
4,277,294	+				-1.9
4,277,295	-				+0.3
4,277,310	-				+0.4
4,277,311	+				-1.5
4,277,329	+		GFF4262	0.11	+0.0
4,277,334	+		GFF4262	0.12	-0.0
4,277,334	+		GFF4262	0.12	-0.6
4,277,334	+		GFF4262	0.12	-0.5
4,277,342	-		GFF4262	0.13	+1.6
4,277,342	-		GFF4262	0.13	-2.3
4,277,342	-		GFF4262	0.13	+0.3
4,277,342	-		GFF4262	0.13	-0.6
4,277,353	+		GFF4262	0.14	-0.5
4,277,353	+		GFF4262	0.14	-0.2
4,277,368	-		GFF4262	0.15	+0.4
4,277,378	-		GFF4262	0.16	-0.8
4,277,383	-		GFF4262	0.17	+0.5
4,277,404	-		GFF4262	0.19	-2.5
4,277,404	-		GFF4262	0.19	-1.2
4,277,420	+		GFF4262	0.20	-1.0
4,277,420	+		GFF4262	0.20	-0.2
4,277,428	+		GFF4262	0.21	-0.2
4,277,429	-		GFF4262	0.21	+0.2
4,277,444	+		GFF4262	0.23	-1.1
4,277,497	-		GFF4262	0.28	-1.4
4,277,502	+		GFF4262	0.29	-0.5
4,277,508	-		GFF4262	0.29	-0.5
4,277,518	+		GFF4262	0.30	-0.8
4,277,518	+		GFF4262	0.30	-0.1
4,277,544	+		GFF4262	0.33	+0.2
4,277,556	+		GFF4262	0.34	+0.1
4,277,556	+		GFF4262	0.34	-0.9
4,277,564	+		GFF4262	0.35	-1.0
4,277,564	-		GFF4262	0.35	-0.2
4,277,580	+		GFF4262	0.37	-0.6
4,277,580	+		GFF4262	0.37	-0.6
4,277,580	+		GFF4262	0.37	-1.1
4,277,580	+		GFF4262	0.37	-1.6
4,277,580	+		GFF4262	0.37	-1.2
4,277,580	+		GFF4262	0.37	-1.1
4,277,580	+		GFF4262	0.37	-1.0
4,277,580	+		GFF4262	0.37	+0.5
4,277,580	+		GFF4262	0.37	-0.4
4,277,580	+		GFF4262	0.37	-0.4
4,277,580	+		GFF4262	0.37	-1.1
4,277,580	+		GFF4262	0.37	-1.2
4,277,580	+		GFF4262	0.37	-2.0
4,277,580	+		GFF4262	0.37	-0.9
4,277,582	-		GFF4262	0.37	-1.6
4,277,585	+		GFF4262	0.37	-1.2
4,277,588	-		GFF4262	0.37	+0.2
4,277,588	-		GFF4262	0.37	+0.1
4,277,588	-		GFF4262	0.37	-1.2
4,277,588	-		GFF4262	0.37	-0.8
4,277,588	-		GFF4262	0.37	-0.6
4,277,588	-		GFF4262	0.37	+0.4
4,277,598	-		GFF4262	0.38	+1.1
4,277,604	+		GFF4262	0.39	-1.0
4,277,611	-		GFF4262	0.40	-0.4
4,277,618	+		GFF4262	0.40	-1.0
4,277,624	+		GFF4262	0.41	+1.3
4,277,624	+		GFF4262	0.41	+0.4
4,277,624	+		GFF4262	0.41	-0.5
4,277,624	-		GFF4262	0.41	+1.5
4,277,626	+		GFF4262	0.41	+0.5
4,277,626	+		GFF4262	0.41	+0.7
4,277,632	-		GFF4262	0.42	-0.8
4,277,632	-		GFF4262	0.42	-1.9
4,277,634	-		GFF4262	0.42	-3.3
4,277,634	-		GFF4262	0.42	-1.4
4,277,634	-		GFF4262	0.42	-1.1
4,277,634	-		GFF4262	0.42	-0.5
4,277,634	-		GFF4262	0.42	-1.3
4,277,640	-		GFF4262	0.43	+0.4
4,277,669	-		GFF4262	0.46	-0.1
4,277,677	+		GFF4262	0.46	-2.7
4,277,677	+		GFF4262	0.46	-0.2
4,277,685	+		GFF4262	0.47	-0.9
4,277,685	+		GFF4262	0.47	-0.3
4,277,693	-		GFF4262	0.48	-2.2
4,277,703	+		GFF4262	0.49	-0.1
4,277,703	+		GFF4262	0.49	-1.2
4,277,703	+		GFF4262	0.49	-0.2
4,277,703	+		GFF4262	0.49	-1.0
4,277,703	+		GFF4262	0.49	+0.3
4,277,703	+		GFF4262	0.49	-0.9
4,277,711	-		GFF4262	0.50	+0.1
4,277,711	-		GFF4262	0.50	-1.4
4,277,711	-		GFF4262	0.50	+0.2
4,277,711	-		GFF4262	0.50	-0.3
4,277,711	-		GFF4262	0.50	-1.3
4,277,721	-		GFF4262	0.51	-0.1
4,277,723	+		GFF4262	0.51	-1.1
4,277,732	+		GFF4262	0.52	+0.3
4,277,732	+		GFF4262	0.52	-1.3
4,277,732	+		GFF4262	0.52	-1.1
4,277,732	+		GFF4262	0.52	+0.8
4,277,732	+		GFF4262	0.52	-1.7
4,277,732	+		GFF4262	0.52	+1.3
4,277,732	+		GFF4262	0.52	-1.3
4,277,740	-		GFF4262	0.53	-1.7
4,277,740	-		GFF4262	0.53	-1.2
4,277,740	-		GFF4262	0.53	-2.6
4,277,740	-		GFF4262	0.53	-0.1
4,277,740	-		GFF4262	0.53	-0.0
4,277,740	-		GFF4262	0.53	-1.4
4,277,740	-		GFF4262	0.53	-1.0
4,277,740	-		GFF4262	0.53	-1.9
4,277,742	-		GFF4262	0.53	-0.3
4,277,757	+		GFF4262	0.54	-2.2
4,277,769	+		GFF4262	0.56	-0.1
4,277,777	-		GFF4262	0.56	-1.6
4,277,786	+		GFF4262	0.57	+0.3
4,277,788	+		GFF4262	0.58	+1.9
4,277,811	-		GFF4262	0.60	-0.1
4,277,816	-		GFF4262	0.60	-1.9
4,277,824	+		GFF4262	0.61	-1.6
4,277,843	+		GFF4262	0.63	-0.5
4,277,851	-		GFF4262	0.64	-0.8
4,277,851	-		GFF4262	0.64	-2.4
4,277,851	-		GFF4262	0.64	-0.1
4,277,851	-		GFF4262	0.64	-1.8
4,277,853	+		GFF4262	0.64	-1.9
4,277,858	+		GFF4262	0.65	+0.6
4,277,858	+		GFF4262	0.65	-0.7
4,277,858	+		GFF4262	0.65	-0.5
4,277,858	+		GFF4262	0.65	-0.8
4,277,858	+		GFF4262	0.65	-0.5
4,277,858	+		GFF4262	0.65	+1.1
4,277,866	-		GFF4262	0.65	-1.5
4,277,866	-		GFF4262	0.65	-1.3
4,277,866	-		GFF4262	0.65	-0.7
4,277,876	-		GFF4262	0.66	-0.7
4,277,878	+		GFF4262	0.67	-0.3
4,277,879	+		GFF4262	0.67	-1.0
4,277,879	-		GFF4262	0.67	-1.1
4,277,887	-		GFF4262	0.68	+0.4
4,277,887	-		GFF4262	0.68	+0.2
4,277,891	-		GFF4262	0.68	-0.3
4,277,896	-		GFF4262	0.68	-0.0
4,277,904	+		GFF4262	0.69	-0.7
4,277,906	+		GFF4262	0.69	-0.8
4,277,914	+		GFF4262	0.70	-1.3
4,277,914	+		GFF4262	0.70	-1.0
4,277,914	+		GFF4262	0.70	-0.5
4,277,922	-		GFF4262	0.71	+0.5
4,277,922	-		GFF4262	0.71	-1.0
4,277,934	+		GFF4262	0.72	-0.5
4,277,934	+		GFF4262	0.72	-1.4
4,277,934	+		GFF4262	0.72	-1.1
4,277,934	+		GFF4262	0.72	+0.5
4,277,942	-		GFF4262	0.73	-1.1
4,277,942	-		GFF4262	0.73	-0.7
4,277,945	-		GFF4262	0.73	+0.7
4,277,952	-		GFF4262	0.74	-0.9
4,277,970	-		GFF4262	0.76	-1.2
4,277,970	-		GFF4262	0.76	-1.9
4,277,970	-		GFF4262	0.76	+1.4
4,277,989	-		GFF4262	0.78	-0.6
4,277,989	-		GFF4262	0.78	-0.0
4,277,989	-		GFF4262	0.78	-1.1
4,277,992	+		GFF4262	0.78	-1.6
4,278,005	-		GFF4262	0.79	-1.3
4,278,018	+		GFF4262	0.81	-2.2
4,278,035	-		GFF4262	0.83	-2.0
4,278,053	+		GFF4262	0.84	-1.5
4,278,053	+		GFF4262	0.84	+0.9
4,278,053	+		GFF4262	0.84	-0.4
4,278,061	-		GFF4262	0.85	-1.8
4,278,067	-		GFF4262	0.86	-1.2
4,278,069	+		GFF4262	0.86	-0.3
4,278,071	-		GFF4262	0.86	-1.2
4,278,074	+		GFF4262	0.86	-1.4
4,278,077	-		GFF4262	0.87	-0.6
4,278,079	+		GFF4262	0.87	+0.8
4,278,082	-		GFF4262	0.87	-1.2
4,278,092	-		GFF4262	0.88	+0.5
4,278,099	-		GFF4262	0.89	-1.4
4,278,105	+		GFF4262	0.90	+0.1
4,278,131	+				-0.6
4,278,131	+				-0.8
4,278,139	-				-0.7
4,278,161	+				+0.4
4,278,177	+				-0.5
4,278,177	+				+0.1
4,278,185	-				-1.3
4,278,213	-				-0.5
4,278,223	-				-1.1
4,278,223	-				-1.2
4,278,232	-				-0.6
4,278,243	-				-2.7
4,278,261	+				+0.9
4,278,261	+				+0.1
4,278,261	+				-0.2
4,278,269	-				-1.1
4,278,269	-				-1.1
4,278,269	-				-0.7
4,278,269	-				-0.9
4,278,269	-				-0.9
4,278,269	-				-0.1
4,278,274	-				-1.0
4,278,282	+				+1.4
4,278,301	+				+0.4
4,278,301	+				+1.1
4,278,305	+				-1.5
4,278,306	+				-1.8
4,278,306	+				-1.2
4,278,306	+				-1.0
4,278,306	+				-0.8
4,278,306	+				-0.6
4,278,306	+				+0.4
4,278,309	-				+0.5
4,278,314	-				-0.6
4,278,314	-				-0.1
4,278,314	-				-0.1
4,278,314	-				-0.6
4,278,314	-				+0.9
4,278,314	-				-1.2
4,278,314	-				-0.8
4,278,314	-				-1.5
4,278,328	+				-1.2
4,278,330	-				+0.9
4,278,374	-				-0.8
4,278,383	+		GFF4263	0.10	+1.1
4,278,391	+		GFF4263	0.12	+0.5
4,278,399	-		GFF4263	0.13	-1.1
4,278,402	+		GFF4263	0.13	+0.8
4,278,407	+		GFF4263	0.14	-1.8
4,278,410	-		GFF4263	0.15	-0.2
4,278,410	-		GFF4263	0.15	-0.6
4,278,411	+		GFF4263	0.15	+0.8
4,278,421	+		GFF4263	0.17	-1.2
4,278,424	+		GFF4263	0.17	+0.6
4,278,429	-		GFF4263	0.18	+1.2
4,278,432	-		GFF4263	0.19	-2.2
4,278,432	-		GFF4263	0.19	-2.5
4,278,432	-		GFF4263	0.19	-0.5
4,278,432	-		GFF4263	0.19	-0.8
4,278,455	+		GFF4263	0.23	-0.4
4,278,495	+		GFF4263	0.30	-0.6
4,278,495	+		GFF4263	0.30	-0.3
4,278,503	+		GFF4263	0.31	+0.4
4,278,509	+		GFF4263	0.32	-1.6
4,278,511	-		GFF4263	0.32	-0.5
4,278,513	-		GFF4263	0.33	-1.0
4,278,529	-		GFF4263	0.35	-0.3
4,278,594	+		GFF4263	0.47	+0.6
4,278,596	+		GFF4263	0.47	-0.9
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