Strain Fitness in Sphingobium sp. HT1-2 around GFF404

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF403 and GFF404 are separated by 146 nucleotidesGFF404 and GFF405 are separated by 32 nucleotides GFF403 - Aspartate aminotransferase (EC 2.6.1.1), at 391,016 to 392,257 GFF403 GFF404 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 392,404 to 393,027 GFF404 GFF405 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 393,060 to 394,238 GFF405 Position (kb) 392 393 394Strain fitness (log2 ratio) -2 -1 0 1 2 3at 391.453 kb on + strand, within GFF403at 391.456 kb on - strand, within GFF403at 391.459 kb on - strand, within GFF403at 391.501 kb on + strand, within GFF403at 391.502 kb on - strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.519 kb on + strand, within GFF403at 391.540 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.550 kb on + strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.589 kb on - strand, within GFF403at 391.592 kb on - strand, within GFF403at 391.623 kb on - strand, within GFF403at 391.629 kb on + strand, within GFF403at 391.637 kb on + strand, within GFF403at 391.645 kb on - strand, within GFF403at 391.652 kb on - strand, within GFF403at 391.652 kb on - strand, within GFF403at 391.656 kb on + strand, within GFF403at 391.657 kb on - strand, within GFF403at 391.686 kb on + strand, within GFF403at 391.723 kb on - strand, within GFF403at 391.740 kb on - strand, within GFF403at 391.748 kb on + strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.766 kb on - strand, within GFF403at 391.789 kb on - strand, within GFF403at 391.804 kb on - strand, within GFF403at 391.820 kb on + strand, within GFF403at 391.836 kb on - strand, within GFF403at 391.836 kb on - strand, within GFF403at 391.867 kb on + strand, within GFF403at 391.875 kb on - strand, within GFF403at 391.887 kb on + strand, within GFF403at 391.895 kb on - strand, within GFF403at 391.899 kb on + strand, within GFF403at 391.899 kb on + strand, within GFF403at 391.899 kb on + strand, within GFF403at 391.917 kb on - strand, within GFF403at 391.944 kb on - strand, within GFF403at 391.995 kb on + strand, within GFF403at 392.113 kb on + strand, within GFF403at 392.121 kb on - strand, within GFF403at 392.121 kb on - strand, within GFF403at 392.123 kb on + strand, within GFF403at 392.170 kb on + strandat 392.181 kb on + strandat 392.331 kb on + strandat 392.375 kb on + strandat 392.428 kb on - strandat 392.490 kb on - strand, within GFF404at 392.501 kb on - strand, within GFF404at 392.501 kb on - strand, within GFF404at 392.509 kb on + strand, within GFF404at 392.552 kb on - strand, within GFF404at 392.586 kb on - strand, within GFF404at 392.595 kb on - strand, within GFF404at 392.606 kb on - strand, within GFF404at 392.618 kb on + strand, within GFF404at 392.618 kb on + strand, within GFF404at 392.619 kb on + strand, within GFF404at 392.628 kb on + strand, within GFF404at 392.636 kb on + strand, within GFF404at 392.644 kb on - strand, within GFF404at 392.644 kb on - strand, within GFF404at 392.646 kb on + strand, within GFF404at 392.646 kb on + strand, within GFF404at 392.646 kb on + strand, within GFF404at 392.654 kb on - strand, within GFF404at 392.654 kb on - strand, within GFF404at 392.662 kb on + strand, within GFF404at 392.662 kb on + strand, within GFF404at 392.662 kb on + strand, within GFF404at 392.665 kb on + strand, within GFF404at 392.670 kb on - strand, within GFF404at 392.696 kb on + strand, within GFF404at 392.699 kb on + strand, within GFF404at 392.707 kb on - strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.748 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.765 kb on + strand, within GFF404at 392.766 kb on - strand, within GFF404at 392.774 kb on - strand, within GFF404at 392.776 kb on + strand, within GFF404at 392.784 kb on - strand, within GFF404at 392.793 kb on + strand, within GFF404at 392.801 kb on - strand, within GFF404at 392.801 kb on - strand, within GFF404at 392.853 kb on + strand, within GFF404at 392.853 kb on + strand, within GFF404at 392.861 kb on - strand, within GFF404at 392.867 kb on - strand, within GFF404at 392.869 kb on - strand, within GFF404at 392.904 kb on - strand, within GFF404at 392.924 kb on + strand, within GFF404at 392.926 kb on + strand, within GFF404at 392.926 kb on + strand, within GFF404at 392.935 kb on - strand, within GFF404at 392.974 kb on - strandat 392.974 kb on - strandat 392.976 kb on + strandat 392.990 kb on + strandat 392.998 kb on - strandat 393.001 kb on + strandat 393.024 kb on + strandat 393.025 kb on + strandat 393.025 kb on - strandat 393.033 kb on - strandat 393.033 kb on - strandat 393.033 kb on - strandat 393.035 kb on + strandat 393.035 kb on + strandat 393.043 kb on - strandat 393.043 kb on - strandat 393.064 kb on - strandat 393.078 kb on - strandat 393.086 kb on + strandat 393.229 kb on + strand, within GFF405at 393.232 kb on - strand, within GFF405at 393.240 kb on + strand, within GFF405at 393.242 kb on - strand, within GFF405at 393.247 kb on + strand, within GFF405at 393.250 kb on - strand, within GFF405at 393.254 kb on - strand, within GFF405at 393.268 kb on + strand, within GFF405at 393.268 kb on + strand, within GFF405at 393.276 kb on - strand, within GFF405at 393.276 kb on - strand, within GFF405at 393.295 kb on + strand, within GFF405at 393.304 kb on - strand, within GFF405at 393.330 kb on + strand, within GFF405at 393.336 kb on - strand, within GFF405at 393.338 kb on - strand, within GFF405at 393.349 kb on + strand, within GFF405at 393.359 kb on + strand, within GFF405at 393.359 kb on + strand, within GFF405at 393.359 kb on + strand, within GFF405at 393.367 kb on - strand, within GFF405at 393.378 kb on - strand, within GFF405at 393.399 kb on - strand, within GFF405at 393.399 kb on - strand, within GFF405at 393.399 kb on - strand, within GFF405at 393.399 kb on - strand, within GFF405at 393.420 kb on + strand, within GFF405at 393.421 kb on + strand, within GFF405at 393.427 kb on + strand, within GFF405at 393.427 kb on + strand, within GFF405at 393.427 kb on + strand, within GFF405at 393.428 kb on - strand, within GFF405at 393.429 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.435 kb on - strand, within GFF405at 393.437 kb on + strand, within GFF405at 393.467 kb on - strand, within GFF405at 393.524 kb on + strand, within GFF405at 393.524 kb on + strand, within GFF405at 393.524 kb on + strand, within GFF405at 393.530 kb on - strand, within GFF405at 393.532 kb on - strand, within GFF405at 393.577 kb on + strand, within GFF405at 393.589 kb on + strand, within GFF405at 393.589 kb on + strand, within GFF405at 393.595 kb on - strand, within GFF405at 393.597 kb on - strand, within GFF405at 393.600 kb on - strand, within GFF405at 393.630 kb on - strand, within GFF405at 393.642 kb on - strand, within GFF405at 393.730 kb on - strand, within GFF405at 393.730 kb on - strand, within GFF405at 393.786 kb on - strand, within GFF405at 393.807 kb on + strand, within GFF405at 393.815 kb on - strand, within GFF405at 393.823 kb on + strand, within GFF405at 393.831 kb on - strand, within GFF405at 393.855 kb on + strand, within GFF405at 393.857 kb on + strand, within GFF405at 393.862 kb on + strand, within GFF405at 393.863 kb on - strand, within GFF405at 393.870 kb on - strand, within GFF405at 393.877 kb on + strand, within GFF405at 393.900 kb on - strand, within GFF405at 393.900 kb on - strand, within GFF405at 393.913 kb on - strand, within GFF405at 393.915 kb on + strand, within GFF405at 393.940 kb on + strand, within GFF405at 393.948 kb on - strand, within GFF405at 393.948 kb on - strand, within GFF405at 393.948 kb on - strand, within GFF405at 393.948 kb on - strand, within GFF405at 393.955 kb on + strand, within GFF405at 393.958 kb on - strand, within GFF405at 393.958 kb on - strand, within GFF405at 393.960 kb on + strand, within GFF405at 393.963 kb on - strand, within GFF405at 393.975 kb on - strand, within GFF405at 393.979 kb on + strand, within GFF405at 393.980 kb on - strand, within GFF405at 393.980 kb on - strand, within GFF405at 393.984 kb on + strand, within GFF405at 393.985 kb on + strand, within GFF405

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate
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391,453 + GFF403 0.35 +0.2
391,456 - GFF403 0.35 -2.0
391,459 - GFF403 0.36 +0.5
391,501 + GFF403 0.39 -0.6
391,502 - GFF403 0.39 -1.0
391,511 + GFF403 0.40 -0.4
391,511 + GFF403 0.40 +0.0
391,511 + GFF403 0.40 -1.0
391,519 + GFF403 0.40 -1.7
391,540 + GFF403 0.42 -0.8
391,545 + GFF403 0.43 -1.7
391,545 + GFF403 0.43 -1.6
391,545 + GFF403 0.43 -0.2
391,545 + GFF403 0.43 +1.0
391,545 + GFF403 0.43 -1.5
391,550 + GFF403 0.43 -0.8
391,553 - GFF403 0.43 -0.8
391,553 - GFF403 0.43 -1.3
391,553 - GFF403 0.43 +1.7
391,589 - GFF403 0.46 -1.0
391,592 - GFF403 0.46 -1.4
391,623 - GFF403 0.49 -1.1
391,629 + GFF403 0.49 +0.6
391,637 + GFF403 0.50 -1.0
391,645 - GFF403 0.51 +0.2
391,652 - GFF403 0.51 -1.9
391,652 - GFF403 0.51 -1.8
391,656 + GFF403 0.52 -0.7
391,657 - GFF403 0.52 -1.6
391,686 + GFF403 0.54 +0.0
391,723 - GFF403 0.57 -0.5
391,740 - GFF403 0.58 -2.2
391,748 + GFF403 0.59 -1.9
391,761 - GFF403 0.60 +0.0
391,761 - GFF403 0.60 -1.3
391,761 - GFF403 0.60 +0.3
391,761 - GFF403 0.60 -0.8
391,766 - GFF403 0.60 -1.3
391,789 - GFF403 0.62 +1.0
391,804 - GFF403 0.63 -2.0
391,820 + GFF403 0.65 +1.0
391,836 - GFF403 0.66 -0.2
391,836 - GFF403 0.66 +0.5
391,867 + GFF403 0.69 -1.3
391,875 - GFF403 0.69 -1.1
391,887 + GFF403 0.70 -0.8
391,895 - GFF403 0.71 -1.0
391,899 + GFF403 0.71 -1.5
391,899 + GFF403 0.71 -2.1
391,899 + GFF403 0.71 -1.8
391,917 - GFF403 0.73 -1.0
391,944 - GFF403 0.75 -0.5
391,995 + GFF403 0.79 +0.5
392,113 + GFF403 0.88 -1.4
392,121 - GFF403 0.89 +0.8
392,121 - GFF403 0.89 -2.1
392,123 + GFF403 0.89 -1.2
392,170 + -0.8
392,181 + -1.3
392,331 + -1.7
392,375 + +0.2
392,428 - -0.1
392,490 - GFF404 0.14 +2.8
392,501 - GFF404 0.16 -0.8
392,501 - GFF404 0.16 +1.0
392,509 + GFF404 0.17 +0.3
392,552 - GFF404 0.24 -1.6
392,586 - GFF404 0.29 +0.0
392,595 - GFF404 0.31 +0.4
392,606 - GFF404 0.32 +0.3
392,618 + GFF404 0.34 -1.3
392,618 + GFF404 0.34 +0.7
392,619 + GFF404 0.34 -1.3
392,628 + GFF404 0.36 +1.2
392,636 + GFF404 0.37 -0.2
392,644 - GFF404 0.38 -0.5
392,644 - GFF404 0.38 -0.2
392,646 + GFF404 0.39 -1.1
392,646 + GFF404 0.39 +0.1
392,646 + GFF404 0.39 +0.7
392,654 - GFF404 0.40 -1.4
392,654 - GFF404 0.40 -1.2
392,662 + GFF404 0.41 +1.3
392,662 + GFF404 0.41 -0.0
392,662 + GFF404 0.41 +0.5
392,665 + GFF404 0.42 -0.7
392,670 - GFF404 0.43 +1.4
392,696 + GFF404 0.47 -0.5
392,699 + GFF404 0.47 +0.1
392,707 - GFF404 0.49 +0.6
392,747 + GFF404 0.55 +0.3
392,747 + GFF404 0.55 +1.0
392,747 + GFF404 0.55 +1.0
392,747 + GFF404 0.55 +0.0
392,747 + GFF404 0.55 -0.7
392,747 + GFF404 0.55 +2.4
392,747 + GFF404 0.55 -1.0
392,747 + GFF404 0.55 -0.1
392,747 + GFF404 0.55 +1.0
392,747 + GFF404 0.55 +0.4
392,747 + GFF404 0.55 +0.2
392,748 - GFF404 0.55 +0.2
392,755 - GFF404 0.56 -1.2
392,755 - GFF404 0.56 -0.3
392,755 - GFF404 0.56 +2.3
392,755 - GFF404 0.56 +0.8
392,755 - GFF404 0.56 -0.8
392,755 - GFF404 0.56 +0.4
392,755 - GFF404 0.56 +0.0
392,755 - GFF404 0.56 +1.6
392,755 - GFF404 0.56 -0.8
392,755 - GFF404 0.56 +1.1
392,765 + GFF404 0.58 +1.5
392,766 - GFF404 0.58 +0.4
392,774 - GFF404 0.59 -0.1
392,776 + GFF404 0.60 +0.9
392,784 - GFF404 0.61 +1.7
392,793 + GFF404 0.62 +0.9
392,801 - GFF404 0.64 -0.7
392,801 - GFF404 0.64 +0.7
392,853 + GFF404 0.72 +1.3
392,853 + GFF404 0.72 +0.7
392,861 - GFF404 0.73 +0.9
392,867 - GFF404 0.74 -0.0
392,869 - GFF404 0.75 -0.4
392,904 - GFF404 0.80 +0.8
392,924 + GFF404 0.83 -0.6
392,926 + GFF404 0.84 +0.0
392,926 + GFF404 0.84 +0.6
392,935 - GFF404 0.85 +0.2
392,974 - -0.5
392,974 - -2.0
392,976 + +0.5
392,990 + -1.3
392,998 - +1.9
393,001 + +0.7
393,024 + +1.3
393,025 + +1.6
393,025 - -1.2
393,033 - +0.8
393,033 - +1.8
393,033 - -1.1
393,035 + -1.0
393,035 + -1.8
393,043 - +0.5
393,043 - +1.0
393,064 - -0.8
393,078 - +0.5
393,086 + -0.9
393,229 + GFF405 0.14 -0.7
393,232 - GFF405 0.15 +0.8
393,240 + GFF405 0.15 -0.3
393,242 - GFF405 0.15 +1.0
393,247 + GFF405 0.16 -0.9
393,250 - GFF405 0.16 +0.9
393,254 - GFF405 0.16 +1.3
393,268 + GFF405 0.18 +0.5
393,268 + GFF405 0.18 +1.4
393,276 - GFF405 0.18 -0.8
393,276 - GFF405 0.18 -0.5
393,295 + GFF405 0.20 +0.8
393,304 - GFF405 0.21 +1.0
393,330 + GFF405 0.23 +0.7
393,336 - GFF405 0.23 -1.4
393,338 - GFF405 0.24 -0.2
393,349 + GFF405 0.25 -2.0
393,359 + GFF405 0.25 +0.5
393,359 + GFF405 0.25 -0.2
393,359 + GFF405 0.25 -0.1
393,367 - GFF405 0.26 -0.1
393,378 - GFF405 0.27 -0.4
393,399 - GFF405 0.29 -0.0
393,399 - GFF405 0.29 -0.2
393,399 - GFF405 0.29 -0.8
393,399 - GFF405 0.29 +0.7
393,420 + GFF405 0.31 +1.3
393,421 + GFF405 0.31 +0.9
393,427 + GFF405 0.31 +0.3
393,427 + GFF405 0.31 +0.2
393,427 + GFF405 0.31 -0.8
393,428 - GFF405 0.31 +1.6
393,429 - GFF405 0.31 -1.2
393,435 - GFF405 0.32 +0.7
393,435 - GFF405 0.32 +1.0
393,435 - GFF405 0.32 -0.4
393,435 - GFF405 0.32 -2.1
393,435 - GFF405 0.32 -0.7
393,435 - GFF405 0.32 +0.8
393,435 - GFF405 0.32 -1.2
393,435 - GFF405 0.32 +1.5
393,435 - GFF405 0.32 +0.5
393,435 - GFF405 0.32 +0.6
393,435 - GFF405 0.32 +1.3
393,435 - GFF405 0.32 -1.5
393,435 - GFF405 0.32 +0.4
393,437 + GFF405 0.32 +0.4
393,467 - GFF405 0.35 +0.8
393,524 + GFF405 0.39 +1.2
393,524 + GFF405 0.39 -1.5
393,524 + GFF405 0.39 +1.8
393,530 - GFF405 0.40 +0.5
393,532 - GFF405 0.40 -0.7
393,577 + GFF405 0.44 -1.4
393,589 + GFF405 0.45 +2.0
393,589 + GFF405 0.45 +2.5
393,595 - GFF405 0.45 -0.1
393,597 - GFF405 0.46 -1.1
393,600 - GFF405 0.46 -1.2
393,630 - GFF405 0.48 -0.5
393,642 - GFF405 0.49 +0.8
393,730 - GFF405 0.57 -0.5
393,730 - GFF405 0.57 -0.5
393,786 - GFF405 0.62 -1.3
393,807 + GFF405 0.63 +1.6
393,815 - GFF405 0.64 +0.6
393,823 + GFF405 0.65 -0.7
393,831 - GFF405 0.65 -0.0
393,855 + GFF405 0.67 +0.5
393,857 + GFF405 0.68 -0.8
393,862 + GFF405 0.68 -1.2
393,863 - GFF405 0.68 -1.4
393,870 - GFF405 0.69 -0.3
393,877 + GFF405 0.69 +0.3
393,900 - GFF405 0.71 +0.6
393,900 - GFF405 0.71 -0.9
393,913 - GFF405 0.72 +1.4
393,915 + GFF405 0.73 +0.3
393,940 + GFF405 0.75 +1.3
393,948 - GFF405 0.75 -0.4
393,948 - GFF405 0.75 +0.7
393,948 - GFF405 0.75 +0.6
393,948 - GFF405 0.75 +0.9
393,955 + GFF405 0.76 +0.2
393,958 - GFF405 0.76 -0.5
393,958 - GFF405 0.76 +0.2
393,960 + GFF405 0.76 +0.2
393,963 - GFF405 0.77 -1.3
393,975 - GFF405 0.78 +0.2
393,979 + GFF405 0.78 -0.0
393,980 - GFF405 0.78 -0.3
393,980 - GFF405 0.78 -1.2
393,984 + GFF405 0.78 -0.2
393,985 + GFF405 0.78 -0.5

Or see this region's nucleotide sequence