Strain Fitness in Sphingobium sp. HT1-2 around GFF3952

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,992,236	+		GFF3951	0.70	-0.2
3,992,246	-		GFF3951	0.70	-1.7
3,992,261	+		GFF3951	0.71	-0.4
3,992,271	+		GFF3951	0.71	-1.7
3,992,271	+		GFF3951	0.71	-0.7
3,992,271	+		GFF3951	0.71	-1.3
3,992,279	-		GFF3951	0.71	-0.8
3,992,279	-		GFF3951	0.71	+0.4
3,992,279	-		GFF3951	0.71	+0.7
3,992,279	-		GFF3951	0.71	+0.4
3,992,284	-		GFF3951	0.72	+0.9
3,992,286	+		GFF3951	0.72	+0.7
3,992,294	+		GFF3951	0.72	+0.8
3,992,294	-		GFF3951	0.72	+0.4
3,992,301	+		GFF3951	0.72	+0.5
3,992,309	+		GFF3951	0.72	-1.2
3,992,331	+		GFF3951	0.73	+0.7
3,992,337	-		GFF3951	0.73	-0.6
3,992,337	-		GFF3951	0.73	-1.1
3,992,361	-		GFF3951	0.74	+0.6
3,992,382	+		GFF3951	0.75	+0.6
3,992,390	+		GFF3951	0.75	-0.8
3,992,405	+		GFF3951	0.75	-0.3
3,992,428	-		GFF3951	0.76	-0.6
3,992,446	+		GFF3951	0.77	+0.6
3,992,447	+		GFF3951	0.77	+0.2
3,992,453	+		GFF3951	0.77	-1.0
3,992,463	+		GFF3951	0.77	-0.6
3,992,463	+		GFF3951	0.77	-0.2
3,992,471	-		GFF3951	0.77	-1.2
3,992,473	+		GFF3951	0.78	+1.1
3,992,473	+		GFF3951	0.78	+1.2
3,992,481	-		GFF3951	0.78	-2.3
3,992,481	-		GFF3951	0.78	+0.1
3,992,481	-		GFF3951	0.78	-1.5
3,992,481	-		GFF3951	0.78	-0.7
3,992,481	-		GFF3951	0.78	-0.1
3,992,481	-		GFF3951	0.78	-0.3
3,992,481	-		GFF3951	0.78	-0.9
3,992,497	+		GFF3951	0.78	-1.2
3,992,497	+		GFF3951	0.78	-2.5
3,992,497	+		GFF3951	0.78	-0.8
3,992,497	+		GFF3951	0.78	-0.4
3,992,497	+		GFF3951	0.78	-1.6
3,992,497	+		GFF3951	0.78	+1.1
3,992,505	-		GFF3951	0.79	-0.4
3,992,505	-		GFF3951	0.79	+1.2
3,992,505	-		GFF3951	0.79	-0.8
3,992,505	-		GFF3951	0.79	-1.6
3,992,505	-		GFF3951	0.79	-0.9
3,992,579	+		GFF3951	0.81	-1.1
3,992,615	+		GFF3951	0.82	-0.8
3,992,615	+		GFF3951	0.82	-0.6
3,992,620	-		GFF3951	0.82	+1.3
3,992,623	-		GFF3951	0.82	+1.2
3,992,623	-		GFF3951	0.82	-0.6
3,992,625	+		GFF3951	0.82	-0.1
3,992,628	+		GFF3951	0.82	-1.3
3,992,651	-		GFF3951	0.83	+0.1
3,992,677	-		GFF3951	0.84	-0.6
3,992,690	-		GFF3951	0.84	-2.1
3,992,700	-		GFF3951	0.85	-1.3
3,992,700	-		GFF3951	0.85	-0.4
3,992,701	-		GFF3951	0.85	+1.8
3,992,716	-		GFF3951	0.85	-0.2
3,992,726	-		GFF3951	0.85	-0.3
3,992,728	-		GFF3951	0.86	-0.8
3,992,763	+		GFF3951	0.87	-0.1
3,992,777	+		GFF3951	0.87	-1.3
3,992,807	+		GFF3951	0.88	+0.1
3,992,807	+		GFF3951	0.88	-1.9
3,992,812	+		GFF3951	0.88	-1.7
3,992,820	-		GFF3951	0.88	+0.7
3,992,820	-		GFF3951	0.88	-0.0
3,992,820	-		GFF3951	0.88	-0.9
3,992,841	+		GFF3951	0.89	-0.8
3,992,870	+				-0.0
3,992,890	+				-0.1
3,992,893	-				-1.6
3,992,893	-				+0.2
3,992,951	+				+1.0
3,992,964	+				+0.5
3,992,965	-				-0.5
3,992,995	-				-0.4
3,993,001	+				-1.1
3,993,002	+				-0.3
3,993,010	-				+0.6
3,993,021	-				-0.2
3,993,026	+				-0.2
3,993,029	-				+0.1
3,993,042	+				+1.7
3,993,045	-				-1.3
3,993,054	+				-1.4
3,993,054	+				-0.2
3,993,060	-				-0.5
3,993,062	+				-0.9
3,993,070	-				-0.2
3,993,080	+				-0.6
3,993,094	-				-0.9
3,993,107	+				+1.7
3,993,122	+				+0.1
3,993,130	-				-0.5
3,993,130	-				-0.8
3,993,132	+				+1.0
3,993,132	+				-0.4
3,993,132	+				-1.3
3,993,132	+				-0.5
3,993,132	+				-1.2
3,993,132	+				-1.2
3,993,140	-				-1.7
3,993,140	-				-1.6
3,993,142	+				+0.0
3,993,142	+				-0.9
3,993,150	-				+2.3
3,993,150	-				-1.5
3,993,150	-				-1.8
3,993,150	-				-1.0
3,993,173	+				-1.0
3,993,179	-				-0.3
3,993,201	+				-2.0
3,993,221	+				+0.5
3,993,299	+				-0.9
3,993,302	-				-0.3
3,993,307	-				+0.2
3,993,336	-		GFF3952	0.10	-1.0
3,993,336	-		GFF3952	0.10	+1.2
3,993,354	+		GFF3952	0.12	-1.2
3,993,396	+		GFF3952	0.15	-2.4
3,993,399	-		GFF3952	0.15	-0.2
3,993,403	-		GFF3952	0.15	-0.6
3,993,428	+		GFF3952	0.17	+1.3
3,993,450	+		GFF3952	0.18	+0.4
3,993,450	+		GFF3952	0.18	+1.5
3,993,450	+		GFF3952	0.18	-0.0
3,993,450	+		GFF3952	0.18	+0.3
3,993,450	+		GFF3952	0.18	-0.2
3,993,450	+		GFF3952	0.18	-0.2
3,993,450	+		GFF3952	0.18	-0.6
3,993,458	-		GFF3952	0.19	-1.2
3,993,458	-		GFF3952	0.19	+0.5
3,993,458	-		GFF3952	0.19	+0.7
3,993,458	-		GFF3952	0.19	+1.2
3,993,458	-		GFF3952	0.19	-1.1
3,993,458	-		GFF3952	0.19	-0.1
3,993,458	-		GFF3952	0.19	+0.5
3,993,458	-		GFF3952	0.19	+0.3
3,993,458	-		GFF3952	0.19	-0.5
3,993,463	-		GFF3952	0.19	-1.6
3,993,473	-		GFF3952	0.20	+0.2
3,993,477	+		GFF3952	0.20	+0.2
3,993,477	+		GFF3952	0.20	-1.9
3,993,477	+		GFF3952	0.20	-0.9
3,993,485	-		GFF3952	0.21	-0.8
3,993,485	-		GFF3952	0.21	+1.4
3,993,501	+		GFF3952	0.22	+0.4
3,993,501	+		GFF3952	0.22	+1.6
3,993,501	+		GFF3952	0.22	+0.7
3,993,507	-		GFF3952	0.22	-0.7
3,993,536	+		GFF3952	0.24	-0.4
3,993,536	+		GFF3952	0.24	-0.5
3,993,544	-		GFF3952	0.25	-0.2
3,993,544	-		GFF3952	0.25	-0.9
3,993,544	-		GFF3952	0.25	+0.4
3,993,546	+		GFF3952	0.25	-0.9
3,993,552	+		GFF3952	0.26	-0.8
3,993,552	+		GFF3952	0.26	-0.0
3,993,553	+		GFF3952	0.26	+0.9
3,993,560	-		GFF3952	0.26	-0.4
3,993,576	+		GFF3952	0.27	+1.9
3,993,576	+		GFF3952	0.27	-0.3
3,993,584	-		GFF3952	0.28	+0.4
3,993,633	+		GFF3952	0.31	-0.1
3,993,654	+		GFF3952	0.33	+1.2
3,993,662	-		GFF3952	0.33	-0.3
3,993,706	+		GFF3952	0.36	-0.4
3,993,709	-		GFF3952	0.37	-0.3
3,993,714	-		GFF3952	0.37	-1.5
3,993,714	-		GFF3952	0.37	+1.0
3,993,714	-		GFF3952	0.37	-0.9
3,993,733	+		GFF3952	0.38	+1.6
3,993,743	+		GFF3952	0.39	-1.5
3,993,744	+		GFF3952	0.39	-1.0
3,993,751	-		GFF3952	0.40	+0.8
3,993,771	+		GFF3952	0.41	-0.6
3,993,800	+		GFF3952	0.43	+0.8
3,993,820	-		GFF3952	0.44	+0.4
3,993,820	-		GFF3952	0.44	-1.3
3,993,838	+		GFF3952	0.46	-1.3
3,993,841	-		GFF3952	0.46	-0.6
3,993,841	-		GFF3952	0.46	+0.8
3,993,843	+		GFF3952	0.46	+0.5
3,993,846	-		GFF3952	0.46	+0.2
3,993,857	+		GFF3952	0.47	+1.0
3,993,857	+		GFF3952	0.47	+0.6
3,993,857	+		GFF3952	0.47	-0.8
3,993,865	-		GFF3952	0.48	+0.6
3,993,869	+		GFF3952	0.48	-1.4
3,993,874	+		GFF3952	0.48	+0.4
3,993,874	+		GFF3952	0.48	-1.2
3,993,874	+		GFF3952	0.48	-2.1
3,993,874	+		GFF3952	0.48	-0.8
3,993,879	+		GFF3952	0.49	+0.4
3,993,879	+		GFF3952	0.49	-0.6
3,993,881	-		GFF3952	0.49	+0.3
3,993,882	-		GFF3952	0.49	-1.7
3,993,882	-		GFF3952	0.49	-2.5
3,993,884	+		GFF3952	0.49	+0.1
3,993,884	+		GFF3952	0.49	-0.8
3,993,884	+		GFF3952	0.49	-0.7
3,993,884	+		GFF3952	0.49	-0.6
3,993,884	+		GFF3952	0.49	-0.1
3,993,884	+		GFF3952	0.49	-1.2
3,993,884	+		GFF3952	0.49	-0.2
3,993,884	+		GFF3952	0.49	+0.4
3,993,884	+		GFF3952	0.49	-1.3
3,993,887	+		GFF3952	0.49	+0.6
3,993,887	-		GFF3952	0.49	+0.2
3,993,887	-		GFF3952	0.49	-0.2
3,993,889	+		GFF3952	0.49	-0.3
3,993,892	-		GFF3952	0.49	-1.6
3,993,892	-		GFF3952	0.49	+0.5
3,993,897	-		GFF3952	0.50	-1.3
3,993,912	-		GFF3952	0.51	-0.8
3,993,912	-		GFF3952	0.51	+0.2
3,993,917	+		GFF3952	0.51	+0.5
3,993,917	-		GFF3952	0.51	-0.5
3,993,921	-		GFF3952	0.52	-0.3
3,993,925	-		GFF3952	0.52	+0.4
3,993,927	+		GFF3952	0.52	-1.7
3,993,927	+		GFF3952	0.52	+0.6
3,993,935	-		GFF3952	0.53	-1.8
3,993,936	+		GFF3952	0.53	+0.4
3,993,936	+		GFF3952	0.53	-0.3
3,993,936	+		GFF3952	0.53	-0.4
3,993,936	+		GFF3952	0.53	-2.2
3,993,936	+		GFF3952	0.53	-0.2
3,993,936	+		GFF3952	0.53	-0.2
3,993,936	+		GFF3952	0.53	-1.4
3,993,936	+		GFF3952	0.53	-1.2
3,993,936	+		GFF3952	0.53	-1.5
3,993,938	+		GFF3952	0.53	-0.3
3,993,944	-		GFF3952	0.53	+0.8
3,993,944	-		GFF3952	0.53	-0.7
3,993,944	-		GFF3952	0.53	+1.7
3,993,944	-		GFF3952	0.53	-1.3
3,993,944	-		GFF3952	0.53	-2.1
3,993,946	+		GFF3952	0.53	+0.6
3,993,946	+		GFF3952	0.53	+0.2
3,993,968	-		GFF3952	0.55	-1.1
3,993,970	+		GFF3952	0.55	-1.0
3,993,970	+		GFF3952	0.55	-0.4
3,993,970	+		GFF3952	0.55	-0.2
3,993,970	+		GFF3952	0.55	-0.9
3,993,973	-		GFF3952	0.55	-0.2
3,993,978	-		GFF3952	0.56	-1.5
3,993,980	+		GFF3952	0.56	+0.6
3,993,983	-		GFF3952	0.56	-0.2
3,993,988	-		GFF3952	0.56	-0.3
3,993,988	-		GFF3952	0.56	-0.5
3,993,990	+		GFF3952	0.56	-0.6
3,993,993	-		GFF3952	0.57	-1.8
3,993,998	-		GFF3952	0.57	-0.7
3,993,998	-		GFF3952	0.57	-1.6
3,993,998	-		GFF3952	0.57	+0.2
3,994,009	+		GFF3952	0.58	-2.5
3,994,010	+		GFF3952	0.58	-0.0
3,994,044	+		GFF3952	0.60	+1.2
3,994,044	+		GFF3952	0.60	+0.1
3,994,044	+		GFF3952	0.60	+0.8
3,994,044	+		GFF3952	0.60	-0.5
3,994,047	-		GFF3952	0.60	+0.1
3,994,053	-		GFF3952	0.61	+0.4
3,994,083	+		GFF3952	0.63	-0.5
3,994,096	-		GFF3952	0.64	-0.7
3,994,113	-		GFF3952	0.65	+1.3
3,994,116	+		GFF3952	0.65	-0.7
3,994,116	+		GFF3952	0.65	-1.5
3,994,167	+		GFF3952	0.69	+1.1
3,994,173	-		GFF3952	0.69	-0.6
3,994,175	+		GFF3952	0.69	+0.1
3,994,175	+		GFF3952	0.69	+0.2
3,994,181	+		GFF3952	0.70	+1.6
3,994,181	+		GFF3952	0.70	-0.1
3,994,181	+		GFF3952	0.70	-0.6
3,994,181	+		GFF3952	0.70	-1.1
3,994,181	+		GFF3952	0.70	-1.5
3,994,181	+		GFF3952	0.70	-0.7
3,994,181	+		GFF3952	0.70	-1.1
3,994,181	+		GFF3952	0.70	-0.1
3,994,181	+		GFF3952	0.70	-0.5
3,994,181	+		GFF3952	0.70	-1.2
3,994,181	+		GFF3952	0.70	+0.7
3,994,181	+		GFF3952	0.70	+0.1
3,994,181	+		GFF3952	0.70	-0.1
3,994,181	+		GFF3952	0.70	-0.9
3,994,181	+		GFF3952	0.70	-0.4
3,994,181	+		GFF3952	0.70	-2.1
3,994,181	+		GFF3952	0.70	+0.4
3,994,181	+		GFF3952	0.70	-0.8
3,994,181	+		GFF3952	0.70	-0.8
3,994,183	-		GFF3952	0.70	-0.9
3,994,186	+		GFF3952	0.70	-0.6
3,994,189	-		GFF3952	0.70	-1.2
3,994,189	-		GFF3952	0.70	-0.1
3,994,189	-		GFF3952	0.70	-0.2
3,994,189	-		GFF3952	0.70	-0.7
3,994,189	-		GFF3952	0.70	-1.5
3,994,189	-		GFF3952	0.70	-0.9
3,994,189	-		GFF3952	0.70	-0.9
3,994,189	-		GFF3952	0.70	-1.3
3,994,189	-		GFF3952	0.70	-0.9
3,994,189	-		GFF3952	0.70	-1.1
3,994,189	-		GFF3952	0.70	+0.3
3,994,189	-		GFF3952	0.70	-0.5
3,994,189	-		GFF3952	0.70	-1.0
3,994,189	-		GFF3952	0.70	+1.2
3,994,190	+		GFF3952	0.70	-0.6
3,994,191	+		GFF3952	0.71	+0.3
3,994,198	-		GFF3952	0.71	-2.1
3,994,200	+		GFF3952	0.71	-0.5
3,994,200	+		GFF3952	0.71	-0.9
3,994,200	+		GFF3952	0.71	+0.2
3,994,208	-		GFF3952	0.72	-1.5
3,994,208	-		GFF3952	0.72	-0.0
3,994,214	+		GFF3952	0.72	-0.7
3,994,236	-		GFF3952	0.74	-0.4
3,994,238	+		GFF3952	0.74	-1.1
3,994,238	+		GFF3952	0.74	-0.9
3,994,238	+		GFF3952	0.74	+0.1
3,994,238	+		GFF3952	0.74	+0.9
3,994,238	+		GFF3952	0.74	-1.2
3,994,246	-		GFF3952	0.74	-1.9
3,994,246	-		GFF3952	0.74	+1.5
3,994,246	-		GFF3952	0.74	-0.2
3,994,297	-		GFF3952	0.78	+0.7
3,994,322	+		GFF3952	0.80	+0.3
3,994,330	-		GFF3952	0.80	-0.9
3,994,332	-		GFF3952	0.80	-0.2
3,994,336	+		GFF3952	0.81	-0.9
3,994,344	-		GFF3952	0.81	-0.2
3,994,405	+		GFF3952	0.86	-0.0
3,994,406	-		GFF3952	0.86	-0.4
3,994,438	+		GFF3952	0.88	-0.8
3,994,438	+		GFF3952	0.88	-1.2
3,994,438	+		GFF3952	0.88	-0.5
3,994,438	+		GFF3952	0.88	+0.9
3,994,438	+		GFF3952	0.88	+0.7
3,994,439	+		GFF3952	0.88	+0.3
3,994,446	-		GFF3952	0.89	+1.0
3,994,446	-		GFF3952	0.89	-1.5
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3,994,447	-		GFF3952	0.89	-0.3
3,994,447	-		GFF3952	0.89	-0.2
3,994,455	+		GFF3952	0.89	-0.7
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3,994,481	+				+1.4
3,994,504	-				-0.5
3,994,515	+				-1.0
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3,994,523	-				-0.0
3,994,525	+				-1.6
3,994,525	+				-0.8
3,994,525	+				-1.6
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3,994,533	-				+0.5
3,994,533	-				+1.3
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3,994,537	+				+0.1
3,994,540	-				+0.7
3,994,545	-				+0.0
3,994,557	+				-0.5
3,994,578	+				-1.5
3,994,578	+				+1.8
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3,994,586	-				-1.2
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3,994,590	+				-0.3
3,994,701	+				-0.8
3,994,701	+				+0.8
3,994,703	-				-1.1
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3,994,706	+				+1.0
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3,994,706	+				+0.6
3,994,706	+				-0.7
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3,994,707	+				+0.3
3,994,714	-				+1.7
3,994,714	-				-0.2
3,994,714	-				-0.4
3,994,714	-				-0.8
3,994,714	-				-1.4
3,994,716	+				+1.0
3,994,716	+				+0.6
3,994,724	-				-1.1
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3,994,743	+				-1.5
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3,994,753	+				-1.1
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3,994,777	-		GFF3953	0.14	-1.3
3,994,799	+		GFF3953	0.18	-0.5
3,994,827	+		GFF3953	0.23	-1.2
3,994,835	+		GFF3953	0.25	-1.1
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3,994,845	+		GFF3953	0.27	-0.2
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3,994,850	+		GFF3953	0.28	-0.8
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3,994,956	+		GFF3953	0.47	-0.3
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3,994,959	-		GFF3953	0.48	-0.2
3,994,959	-		GFF3953	0.48	-1.3
3,994,959	-		GFF3953	0.48	+0.3
3,994,959	-		GFF3953	0.48	-2.3
3,994,959	-		GFF3953	0.48	-0.4
3,994,972	-		GFF3953	0.50	-2.3
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3,994,995	+		GFF3953	0.55	-1.4
3,994,995	+		GFF3953	0.55	+0.9
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3,995,030	+		GFF3953	0.61	-0.9
3,995,030	+		GFF3953	0.61	-1.1
3,995,030	+		GFF3953	0.61	-1.1
3,995,030	+		GFF3953	0.61	+0.8
3,995,030	+		GFF3953	0.61	-0.8
3,995,038	-		GFF3953	0.63	-1.9
3,995,038	-		GFF3953	0.63	+1.7
3,995,061	+		GFF3953	0.67	-1.0
3,995,072	+		GFF3953	0.69	-2.1
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3,995,091	+		GFF3953	0.73	-0.2
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3,995,174	-		GFF3953	0.88	-0.7
3,995,191	+				-0.6
3,995,210	+				-0.8
3,995,218	-				-0.6
3,995,226	+				+0.3
3,995,239	-				-0.7
3,995,245	+				-0.2
3,995,263	+				-1.2
3,995,263	+				-0.7
3,995,263	+				+0.5
3,995,263	+				-1.3
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3,995,268	+				+0.7
3,995,268	+				-1.6
3,995,268	+				-0.1
3,995,268	+				-0.9
3,995,268	+				-1.7
3,995,268	+				-0.2
3,995,268	+				-3.0
3,995,268	+				+1.3
3,995,268	+				-0.9
3,995,268	+				-0.4
3,995,268	+				+0.5
3,995,268	+				-1.8
3,995,268	+				+2.0
3,995,268	+				-0.8
3,995,268	+				+0.7
3,995,271	-				+0.2
3,995,271	-				-0.2
3,995,271	-				-1.2
3,995,273	+				-0.3
3,995,276	-				-0.7
3,995,276	-				-0.5
3,995,276	-				+0.8
3,995,276	-				-0.3
3,995,276	-				-1.5
3,995,276	-				-1.7
3,995,276	-				-1.7
3,995,276	-				-0.9
3,995,278	+				-0.3
3,995,278	+				-1.2
3,995,281	-				-0.1
3,995,286	-				-0.3
3,995,302	+				-0.5
3,995,305	-				-0.8
3,995,308	+				-0.2
3,995,315	+				-1.7
3,995,321	-				-2.0
3,995,328	+				-0.6
3,995,333	+				-0.3
3,995,335	-				-0.7
3,995,335	-				-1.1
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3,995,340	-				-0.3
3,995,341	-				+0.6
3,995,370	+				-1.6
3,995,409	-		GFF3954	0.12	-1.2
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3,995,513	+		GFF3954	0.23	-0.4
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3,995,599	-		GFF3954	0.31	-0.3
3,995,604	-		GFF3954	0.32	+0.5