Strain Fitness in Sphingobium sp. HT1-2 around GFF3882

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,922,361	-		GFF3880	0.21	-0.9
3,922,374	+		GFF3880	0.23	-0.4
3,922,389	+		GFF3880	0.25	-1.1
3,922,389	+		GFF3880	0.25	-0.6
3,922,389	+		GFF3880	0.25	+0.5
3,922,392	-		GFF3880	0.25	-0.7
3,922,392	-		GFF3880	0.25	-0.1
3,922,392	-		GFF3880	0.25	-0.6
3,922,392	-		GFF3880	0.25	-0.7
3,922,392	-		GFF3880	0.25	-0.5
3,922,392	-		GFF3880	0.25	-1.3
3,922,392	-		GFF3880	0.25	+0.8
3,922,395	+		GFF3880	0.25	-1.5
3,922,397	-		GFF3880	0.26	-0.3
3,922,404	+		GFF3880	0.26	-0.0
3,922,412	-		GFF3880	0.27	+0.7
3,922,412	-		GFF3880	0.27	+0.3
3,922,419	+		GFF3880	0.28	-0.7
3,922,419	+		GFF3880	0.28	-0.5
3,922,419	+		GFF3880	0.28	-1.3
3,922,421	+		GFF3880	0.28	+1.0
3,922,427	-		GFF3880	0.29	+0.4
3,922,427	-		GFF3880	0.29	-0.3
3,922,429	-		GFF3880	0.29	-0.6
3,922,431	+		GFF3880	0.29	-1.0
3,922,445	+		GFF3880	0.31	+0.4
3,922,445	-		GFF3880	0.31	-1.2
3,922,450	-		GFF3880	0.32	+0.3
3,922,455	+		GFF3880	0.32	-1.5
3,922,455	+		GFF3880	0.32	-0.5
3,922,462	+		GFF3880	0.33	-0.4
3,922,462	+		GFF3880	0.33	+0.3
3,922,462	+		GFF3880	0.33	+0.3
3,922,462	+		GFF3880	0.33	+0.0
3,922,462	+		GFF3880	0.33	-0.5
3,922,462	+		GFF3880	0.33	+0.5
3,922,463	-		GFF3880	0.33	-0.5
3,922,463	-		GFF3880	0.33	-1.1
3,922,463	-		GFF3880	0.33	-0.8
3,922,467	+		GFF3880	0.34	-0.9
3,922,470	-		GFF3880	0.34	+0.7
3,922,470	-		GFF3880	0.34	-0.2
3,922,470	-		GFF3880	0.34	+0.1
3,922,470	-		GFF3880	0.34	-0.9
3,922,475	-		GFF3880	0.34	-1.0
3,922,475	-		GFF3880	0.34	+0.7
3,922,475	-		GFF3880	0.34	-0.0
3,922,480	+		GFF3880	0.35	+0.4
3,922,520	-		GFF3880	0.40	-0.7
3,922,521	+		GFF3880	0.40	-0.5
3,922,531	+		GFF3880	0.41	+0.0
3,922,560	+		GFF3880	0.44	-0.5
3,922,567	-		GFF3880	0.45	-1.4
3,922,568	-		GFF3880	0.45	-0.4
3,922,611	+		GFF3880	0.50	-0.5
3,922,612	+		GFF3880	0.50	+1.0
3,922,620	-		GFF3880	0.51	-0.8
3,922,631	+		GFF3880	0.52	-1.4
3,922,639	-		GFF3880	0.53	-2.0
3,922,639	-		GFF3880	0.53	+0.1
3,922,639	-		GFF3880	0.53	-1.2
3,922,639	-		GFF3880	0.53	+0.7
3,922,654	-		GFF3880	0.55	-0.3
3,922,656	+		GFF3880	0.55	-1.2
3,922,656	+		GFF3880	0.55	-1.4
3,922,656	+		GFF3880	0.55	-0.6
3,922,656	+		GFF3880	0.55	+0.7
3,922,656	+		GFF3880	0.55	-0.7
3,922,656	+		GFF3880	0.55	+0.4
3,922,656	+		GFF3880	0.55	-0.8
3,922,656	+		GFF3880	0.55	-1.1
3,922,656	-		GFF3880	0.55	+0.8
3,922,656	-		GFF3880	0.55	-0.2
3,922,664	-		GFF3880	0.56	+0.9
3,922,664	-		GFF3880	0.56	+1.4
3,922,664	-		GFF3880	0.56	-1.3
3,922,664	-		GFF3880	0.56	-1.5
3,922,664	-		GFF3880	0.56	-0.7
3,922,664	-		GFF3880	0.56	-0.2
3,922,664	-		GFF3880	0.56	-2.0
3,922,702	-		GFF3880	0.60	-0.1
3,922,727	-		GFF3880	0.63	-0.9
3,922,732	+		GFF3880	0.64	+0.7
3,922,732	+		GFF3880	0.64	+0.6
3,922,748	-		GFF3880	0.66	+0.8
3,922,758	+		GFF3880	0.67	-0.7
3,922,761	-		GFF3880	0.67	+0.5
3,922,783	-		GFF3880	0.70	+0.7
3,922,792	+		GFF3880	0.71	-1.7
3,922,793	-		GFF3880	0.71	-0.7
3,922,798	-		GFF3880	0.71	-1.4
3,922,800	-		GFF3880	0.72	-2.0
3,922,827	+		GFF3880	0.75	-1.4
3,922,827	+		GFF3880	0.75	-1.4
3,922,827	+		GFF3880	0.75	-1.2
3,922,835	-		GFF3880	0.76	+2.0
3,922,835	-		GFF3880	0.76	-1.6
3,922,835	-		GFF3880	0.76	-0.3
3,922,837	-		GFF3880	0.76	-1.1
3,922,837	-		GFF3880	0.76	+0.3
3,922,837	-		GFF3880	0.76	-0.3
3,922,837	-		GFF3880	0.76	-0.2
3,922,839	+		GFF3880	0.76	-0.7
3,922,839	+		GFF3880	0.76	-0.2
3,922,839	+		GFF3880	0.76	-0.3
3,922,839	+		GFF3880	0.76	+1.4
3,922,839	+		GFF3880	0.76	-1.6
3,922,839	+		GFF3880	0.76	-1.1
3,922,839	+		GFF3880	0.76	+0.0
3,922,839	+		GFF3880	0.76	-2.4
3,922,839	+		GFF3880	0.76	+0.2
3,922,839	+		GFF3880	0.76	-0.5
3,922,839	+		GFF3880	0.76	+0.7
3,922,839	+		GFF3880	0.76	-0.9
3,922,839	+		GFF3880	0.76	-0.2
3,922,839	+		GFF3880	0.76	+0.6
3,922,839	+		GFF3880	0.76	+1.1
3,922,839	+		GFF3880	0.76	-0.4
3,922,839	+		GFF3880	0.76	-0.0
3,922,839	+		GFF3880	0.76	+0.4
3,922,839	+		GFF3880	0.76	+0.8
3,922,839	+		GFF3880	0.76	+0.3
3,922,839	+		GFF3880	0.76	+0.0
3,922,839	+		GFF3880	0.76	-0.2
3,922,839	+		GFF3880	0.76	-0.8
3,922,839	+		GFF3880	0.76	-0.9
3,922,839	+		GFF3880	0.76	+1.5
3,922,839	+		GFF3880	0.76	-2.1
3,922,839	+		GFF3880	0.76	-0.3
3,922,847	-		GFF3880	0.77	+0.7
3,922,847	-		GFF3880	0.77	-0.6
3,922,847	-		GFF3880	0.77	-1.0
3,922,847	-		GFF3880	0.77	+0.1
3,922,847	-		GFF3880	0.77	-0.5
3,922,847	-		GFF3880	0.77	-0.3
3,922,847	-		GFF3880	0.77	-1.7
3,922,847	-		GFF3880	0.77	-1.2
3,922,847	-		GFF3880	0.77	-0.2
3,922,847	-		GFF3880	0.77	-0.4
3,922,847	-		GFF3880	0.77	+0.1
3,922,847	-		GFF3880	0.77	+1.4
3,922,847	-		GFF3880	0.77	-0.7
3,922,847	-		GFF3880	0.77	-1.0
3,922,847	-		GFF3880	0.77	+1.1
3,922,847	-		GFF3880	0.77	-1.0
3,922,847	-		GFF3880	0.77	+0.9
3,922,847	-		GFF3880	0.77	+0.7
3,922,847	-		GFF3880	0.77	-0.7
3,922,847	-		GFF3880	0.77	+0.5
3,922,847	-		GFF3880	0.77	+0.6
3,922,847	-		GFF3880	0.77	-1.4
3,922,847	-		GFF3880	0.77	-0.3
3,922,847	-		GFF3880	0.77	-1.2
3,922,847	-		GFF3880	0.77	-1.8
3,922,847	-		GFF3880	0.77	-0.8
3,922,847	-		GFF3880	0.77	-1.0
3,922,847	-		GFF3880	0.77	-1.6
3,922,847	-		GFF3880	0.77	+1.5
3,922,847	-		GFF3880	0.77	-0.1
3,922,847	-		GFF3880	0.77	+0.0
3,922,858	+		GFF3880	0.78	-2.0
3,922,897	-		GFF3880	0.83	-0.8
3,922,940	+		GFF3880	0.88	-0.5
3,922,940	+		GFF3880	0.88	+0.6
3,922,940	+		GFF3880	0.88	-1.5
3,922,940	+		GFF3880	0.88	-0.7
3,922,948	-		GFF3880	0.89	+0.8
3,922,948	-		GFF3880	0.89	-0.9
3,922,968	+				-0.0
3,922,969	+				+0.8
3,922,976	-				-0.2
3,922,995	-				-0.5
3,922,998	-				+1.2
3,923,203	+				-0.9
3,923,203	+				-1.8
3,923,234	+				+0.3
3,923,272	-				-0.7
3,923,287	+				-0.1
3,923,287	+				+0.5
3,923,289	+				-2.8
3,923,289	-				-0.4
3,923,293	+				-1.5
3,923,295	-				+0.1
3,923,298	+				-0.8
3,923,308	-				-1.9
3,923,342	+				-0.6
3,923,352	-				-0.8
3,923,368	+				-0.1
3,923,368	+				-1.0
3,923,370	-				-0.1
3,923,376	-				+0.7
3,923,376	-				-1.5
3,923,388	+				-0.4
3,923,396	-				+0.6
3,923,396	-				-0.5
3,923,396	-				-0.2
3,923,396	-				+0.1
3,923,405	-				+0.6
3,923,416	-				-1.6
3,923,464	+		GFF3882	0.11	-0.9
3,923,464	+		GFF3882	0.11	-0.8
3,923,464	+		GFF3882	0.11	-0.0
3,923,472	-		GFF3882	0.11	+0.7
3,923,472	-		GFF3882	0.11	+0.2
3,923,472	-		GFF3882	0.11	-1.3
3,923,472	-		GFF3882	0.11	-1.4
3,923,472	-		GFF3882	0.11	-1.4
3,923,517	+		GFF3882	0.15	-0.0
3,923,567	+		GFF3882	0.20	-1.3
3,923,675	+		GFF3882	0.29	+0.5
3,923,680	+		GFF3882	0.29	-0.6
3,923,680	+		GFF3882	0.29	-0.8
3,923,680	+		GFF3882	0.29	-1.0
3,923,688	-		GFF3882	0.30	-1.0
3,923,688	-		GFF3882	0.30	+1.5
3,923,688	-		GFF3882	0.30	-0.8
3,923,688	-		GFF3882	0.30	+0.1
3,923,688	-		GFF3882	0.30	+0.0
3,923,688	-		GFF3882	0.30	-0.5
3,923,688	-		GFF3882	0.30	-1.6
3,923,688	-		GFF3882	0.30	+0.8
3,923,688	-		GFF3882	0.30	-0.6
3,923,688	-		GFF3882	0.30	-0.4
3,923,688	-		GFF3882	0.30	-0.4
3,923,688	-		GFF3882	0.30	+0.8
3,923,715	-		GFF3882	0.32	-0.1
3,923,722	-		GFF3882	0.33	+0.4
3,923,727	+		GFF3882	0.33	+0.6
3,923,761	+		GFF3882	0.36	-0.2
3,923,769	+		GFF3882	0.37	+1.0
3,923,774	+		GFF3882	0.37	-1.6
3,923,776	+		GFF3882	0.37	-0.6
3,923,776	+		GFF3882	0.37	-1.7
3,923,777	-		GFF3882	0.38	-0.4
3,923,777	-		GFF3882	0.38	-0.6
3,923,779	+		GFF3882	0.38	+1.0
3,923,779	+		GFF3882	0.38	-1.0
3,923,779	+		GFF3882	0.38	-0.3
3,923,779	+		GFF3882	0.38	+1.0
3,923,779	+		GFF3882	0.38	-2.1
3,923,782	-		GFF3882	0.38	-1.3
3,923,784	-		GFF3882	0.38	-0.0
3,923,786	+		GFF3882	0.38	-0.6
3,923,787	-		GFF3882	0.38	+1.3
3,923,787	-		GFF3882	0.38	+0.3
3,923,787	-		GFF3882	0.38	+0.1
3,923,787	-		GFF3882	0.38	+0.8
3,923,787	-		GFF3882	0.38	-1.7
3,923,787	-		GFF3882	0.38	+0.0
3,923,787	-		GFF3882	0.38	+1.4
3,923,791	+		GFF3882	0.39	-0.2
3,923,807	+		GFF3882	0.40	-0.7
3,923,829	+		GFF3882	0.42	+1.1
3,923,829	+		GFF3882	0.42	+0.0
3,923,853	+		GFF3882	0.44	+0.1
3,923,858	+		GFF3882	0.44	-1.4
3,923,858	+		GFF3882	0.44	+1.0
3,923,866	-		GFF3882	0.45	-1.8
3,923,885	+		GFF3882	0.47	-1.2
3,923,885	+		GFF3882	0.47	-0.8
3,923,885	+		GFF3882	0.47	-1.7
3,923,885	+		GFF3882	0.47	-0.1
3,923,885	+		GFF3882	0.47	+0.1
3,923,885	+		GFF3882	0.47	-0.6
3,923,885	+		GFF3882	0.47	-1.7
3,923,893	-		GFF3882	0.47	-1.6
3,923,893	-		GFF3882	0.47	+0.6
3,923,914	+		GFF3882	0.49	+0.5
3,923,914	+		GFF3882	0.49	-0.8
3,923,919	+		GFF3882	0.50	-0.3
3,923,922	-		GFF3882	0.50	-0.8
3,923,922	-		GFF3882	0.50	-1.6
3,923,927	-		GFF3882	0.50	+0.0
3,923,927	-		GFF3882	0.50	-0.8
3,923,931	+		GFF3882	0.51	-0.8
3,923,931	+		GFF3882	0.51	-0.4
3,923,931	+		GFF3882	0.51	+0.1
3,923,931	+		GFF3882	0.51	-1.2
3,923,939	-		GFF3882	0.51	-0.9
3,923,941	+		GFF3882	0.52	-0.7
3,923,942	+		GFF3882	0.52	+0.4
3,923,959	+		GFF3882	0.53	-1.4
3,923,959	+		GFF3882	0.53	+1.0
3,923,967	+		GFF3882	0.54	+1.5
3,923,967	+		GFF3882	0.54	-0.5
3,923,967	-		GFF3882	0.54	-0.4
3,923,982	+		GFF3882	0.55	+2.0
3,923,982	+		GFF3882	0.55	-0.3
3,923,982	+		GFF3882	0.55	-1.2
3,923,990	-		GFF3882	0.56	-1.3
3,923,990	-		GFF3882	0.56	-0.0
3,923,990	-		GFF3882	0.56	+1.0
3,923,990	-		GFF3882	0.56	-1.4
3,923,995	+		GFF3882	0.56	-0.7
3,924,003	-		GFF3882	0.57	-0.2
3,924,017	+		GFF3882	0.58	-0.6
3,924,020	-		GFF3882	0.58	+0.9
3,924,020	-		GFF3882	0.58	-0.5
3,924,022	+		GFF3882	0.59	+0.4
3,924,022	+		GFF3882	0.59	-1.2
3,924,030	-		GFF3882	0.59	+0.4
3,924,030	-		GFF3882	0.59	+0.1
3,924,030	-		GFF3882	0.59	-0.6
3,924,035	+		GFF3882	0.60	-0.4
3,924,039	-		GFF3882	0.60	+0.1
3,924,043	-		GFF3882	0.60	+1.2
3,924,070	+		GFF3882	0.63	-0.6
3,924,120	-		GFF3882	0.67	-1.5
3,924,122	+		GFF3882	0.67	-0.6
3,924,130	-		GFF3882	0.68	+1.4
3,924,130	-		GFF3882	0.68	-0.3
3,924,137	+		GFF3882	0.68	-0.9
3,924,191	+		GFF3882	0.73	-0.7
3,924,200	+		GFF3882	0.74	-0.7
3,924,200	+		GFF3882	0.74	-2.2
3,924,201	+		GFF3882	0.74	-1.0
3,924,216	-		GFF3882	0.75	-1.2
3,924,223	-		GFF3882	0.76	-0.7
3,924,236	-		GFF3882	0.77	+1.6
3,924,266	+		GFF3882	0.79	+0.1
3,924,273	+		GFF3882	0.80	-1.2
3,924,273	-		GFF3882	0.80	-0.5
3,924,281	-		GFF3882	0.81	+0.5
3,924,304	+		GFF3882	0.83	+0.5
3,924,344	-		GFF3882	0.86	-2.3
3,924,363	+		GFF3882	0.88	+0.2
3,924,378	+		GFF3882	0.89	-0.6
3,924,387	-		GFF3882	0.90	-0.3
3,924,387	-		GFF3882	0.90	-1.7
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