Strain Fitness in Sphingobium sp. HT1-2 around GFF3823

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,862,848	+		GFF3822	0.36	-1.9
3,862,848	+		GFF3822	0.36	+1.2
3,862,856	-		GFF3822	0.36	+0.3
3,862,884	-		GFF3822	0.38	-0.1
3,862,885	+		GFF3822	0.38	-0.5
3,862,893	-		GFF3822	0.39	+0.9
3,862,893	-		GFF3822	0.39	+0.2
3,862,893	-		GFF3822	0.39	+0.6
3,862,923	+		GFF3822	0.40	+1.4
3,862,969	-		GFF3822	0.43	+0.5
3,863,005	+		GFF3822	0.46	+0.2
3,863,010	+		GFF3822	0.46	-0.6
3,863,026	-		GFF3822	0.47	+0.3
3,863,068	+		GFF3822	0.50	+1.6
3,863,087	-		GFF3822	0.51	-1.3
3,863,096	+		GFF3822	0.51	-1.1
3,863,102	-		GFF3822	0.52	-0.8
3,863,104	-		GFF3822	0.52	-0.3
3,863,104	-		GFF3822	0.52	-0.2
3,863,121	-		GFF3822	0.53	-1.0
3,863,171	+		GFF3822	0.56	+1.3
3,863,176	+		GFF3822	0.56	-1.2
3,863,176	+		GFF3822	0.56	-1.2
3,863,176	+		GFF3822	0.56	+0.2
3,863,176	+		GFF3822	0.56	-0.6
3,863,176	+		GFF3822	0.56	+0.5
3,863,183	+		GFF3822	0.57	-1.6
3,863,184	-		GFF3822	0.57	+1.4
3,863,184	-		GFF3822	0.57	-0.3
3,863,184	-		GFF3822	0.57	-0.7
3,863,191	-		GFF3822	0.57	-0.1
3,863,193	+		GFF3822	0.57	+0.6
3,863,208	+		GFF3822	0.58	+0.8
3,863,283	-		GFF3822	0.63	-0.2
3,863,283	-		GFF3822	0.63	+2.6
3,863,283	-		GFF3822	0.63	+0.7
3,863,351	+		GFF3822	0.67	-1.0
3,863,374	+		GFF3822	0.69	-0.1
3,863,378	-		GFF3822	0.69	-0.5
3,863,380	+		GFF3822	0.69	-0.5
3,863,388	-		GFF3822	0.70	+1.3
3,863,532	-		GFF3822	0.79	+0.2
3,863,597	+		GFF3822	0.83	+1.0
3,863,610	-		GFF3822	0.84	-0.1
3,863,613	+		GFF3822	0.84	-1.1
3,863,671	+		GFF3822	0.87	+0.4
3,863,671	+		GFF3822	0.87	-0.7
3,863,679	-		GFF3822	0.88	-0.5
3,863,700	-		GFF3822	0.89	-0.9
3,863,714	-				+0.3
3,863,773	-				-0.7
3,863,794	+				-0.8
3,863,794	+				-1.3
3,863,802	-				-0.2
3,863,809	+				+1.0
3,863,809	+				+0.0
3,863,817	-				-1.1
3,863,907	-				+0.3
3,863,907	-				+0.7
3,863,948	-		GFF3823	0.15	-0.3
3,863,997	-		GFF3823	0.22	+0.2
3,864,006	+		GFF3823	0.23	-0.7
3,864,024	-		GFF3823	0.26	-0.9
3,864,029	+		GFF3823	0.27	-0.5
3,864,058	+		GFF3823	0.31	-0.5
3,864,068	+		GFF3823	0.32	+1.3
3,864,185	-		GFF3823	0.49	-1.5
3,864,192	+		GFF3823	0.50	+1.6
3,864,192	+		GFF3823	0.50	-0.8
3,864,192	+		GFF3823	0.50	-0.4
3,864,200	-		GFF3823	0.51	+0.2
3,864,200	-		GFF3823	0.51	-1.0
3,864,200	-		GFF3823	0.51	+0.3
3,864,202	+		GFF3823	0.51	+0.1
3,864,205	-		GFF3823	0.52	+0.8
3,864,246	-		GFF3823	0.57	-1.0
3,864,262	+		GFF3823	0.60	+0.5
3,864,270	-		GFF3823	0.61	-0.6
3,864,270	-		GFF3823	0.61	+0.2
3,864,307	-		GFF3823	0.66	+1.2
3,864,356	+		GFF3823	0.73	-0.6
3,864,356	+		GFF3823	0.73	+1.6
3,864,356	+		GFF3823	0.73	-0.5
3,864,356	+		GFF3823	0.73	+1.3
3,864,364	-		GFF3823	0.74	-1.0
3,864,379	+		GFF3823	0.76	-1.3
3,864,395	+		GFF3823	0.79	+1.1
3,864,412	+		GFF3823	0.81	-0.7
3,864,448	+		GFF3823	0.86	+0.2
3,864,448	+		GFF3823	0.86	+0.6
3,864,448	+		GFF3823	0.86	-1.0
3,864,448	+		GFF3823	0.86	+0.3
3,864,448	+		GFF3823	0.86	+0.5
3,864,448	+		GFF3823	0.86	+1.6
3,864,448	+		GFF3823	0.86	-0.5
3,864,448	+		GFF3823	0.86	-0.6
3,864,448	+		GFF3823	0.86	+0.5
3,864,448	+		GFF3823	0.86	+0.6
3,864,448	+		GFF3823	0.86	-2.2
3,864,448	+		GFF3823	0.86	-0.0
3,864,448	+		GFF3823	0.86	+0.0
3,864,448	+		GFF3823	0.86	-0.7
3,864,448	+		GFF3823	0.86	-0.7
3,864,448	+		GFF3823	0.86	-0.5
3,864,448	+		GFF3823	0.86	-0.4
3,864,448	+		GFF3823	0.86	-1.1
3,864,448	+		GFF3823	0.86	+0.2
3,864,448	+		GFF3823	0.86	+1.0
3,864,448	+		GFF3823	0.86	-0.9
3,864,448	+		GFF3823	0.86	+0.7
3,864,450	+		GFF3823	0.86	+0.8
3,864,456	-		GFF3823	0.87	-1.2
3,864,456	-		GFF3823	0.87	+0.1
3,864,456	-		GFF3823	0.87	-1.2
3,864,456	-		GFF3823	0.87	-1.5
3,864,456	-		GFF3823	0.87	+0.2
3,864,469	+		GFF3823	0.89	-1.7
3,864,574	-				+0.4
3,864,589	+				+0.9
3,864,597	-				-0.2
3,864,668	+				-1.3
3,864,677	-				+0.4
3,864,700	+		GFF3824	0.24	+0.4
3,864,707	+		GFF3824	0.30	+1.2
3,864,707	+		GFF3824	0.30	+1.5
3,864,707	+		GFF3824	0.30	-0.2
3,864,707	+		GFF3824	0.30	+0.2
3,864,707	+		GFF3824	0.30	+0.0
3,864,707	+		GFF3824	0.30	+1.9
3,864,707	+		GFF3824	0.30	+0.7
3,864,708	-		GFF3824	0.31	-0.2
3,864,715	-		GFF3824	0.37	+0.7
3,864,715	-		GFF3824	0.37	-0.5
3,864,715	-		GFF3824	0.37	+0.0
3,864,715	-		GFF3824	0.37	+0.0
3,864,715	-		GFF3824	0.37	-1.3
3,864,715	-		GFF3824	0.37	-1.0
3,864,715	-		GFF3824	0.37	-0.2
3,864,715	-		GFF3824	0.37	+0.6
3,864,715	-		GFF3824	0.37	+0.1
3,864,771	-		GFF3824	0.86	-1.3
3,864,781	-				-1.1
3,864,820	+				-1.2
3,864,820	+				-0.5
3,864,820	+				-0.6
3,864,860	-				-0.6
3,864,865	+				+0.8
3,864,865	+				+1.0
3,864,865	+				+0.3
3,864,870	+				+0.7
3,864,873	-				-1.8
3,864,873	-				-0.3
3,864,898	+				-0.1
3,864,916	+				-1.1
3,865,037	+		GFF3825	0.13	+1.2
3,865,039	-		GFF3825	0.13	-2.3
3,865,050	-		GFF3825	0.14	-0.2
3,865,053	+		GFF3825	0.14	+0.4
3,865,053	+		GFF3825	0.14	+0.7
3,865,066	-		GFF3825	0.15	-0.7
3,865,078	-		GFF3825	0.15	-1.6
3,865,100	+		GFF3825	0.17	+0.8
3,865,106	-		GFF3825	0.17	+0.8
3,865,122	+		GFF3825	0.18	+0.0
3,865,135	+		GFF3825	0.19	-0.3
3,865,135	+		GFF3825	0.19	-0.6
3,865,135	+		GFF3825	0.19	-0.1
3,865,135	+		GFF3825	0.19	-0.1
3,865,135	+		GFF3825	0.19	+0.5
3,865,141	+		GFF3825	0.19	+0.3
3,865,141	+		GFF3825	0.19	-1.0
3,865,141	+		GFF3825	0.19	+1.9
3,865,141	+		GFF3825	0.19	+0.4
3,865,141	+		GFF3825	0.19	-0.4
3,865,141	+		GFF3825	0.19	+1.0
3,865,141	+		GFF3825	0.19	-1.2
3,865,141	+		GFF3825	0.19	-0.1
3,865,149	-		GFF3825	0.20	-0.9
3,865,149	-		GFF3825	0.20	-0.1
3,865,156	+		GFF3825	0.20	+1.1
3,865,156	+		GFF3825	0.20	+0.7
3,865,156	+		GFF3825	0.20	-1.0
3,865,156	+		GFF3825	0.20	-1.1
3,865,164	-		GFF3825	0.21	-1.8
3,865,164	-		GFF3825	0.21	-0.2
3,865,164	-		GFF3825	0.21	-1.4
3,865,164	-		GFF3825	0.21	+0.4
3,865,164	-		GFF3825	0.21	-0.3
3,865,191	+		GFF3825	0.23	+0.8
3,865,216	-		GFF3825	0.24	-0.1
3,865,218	+		GFF3825	0.24	-0.8
3,865,218	+		GFF3825	0.24	-0.4
3,865,218	+		GFF3825	0.24	-0.0
3,865,226	-		GFF3825	0.25	+0.4
3,865,241	+		GFF3825	0.26	+0.2
3,865,246	+		GFF3825	0.26	+0.7
3,865,270	+		GFF3825	0.27	-0.6
3,865,296	+		GFF3825	0.29	+0.7
3,865,296	+		GFF3825	0.29	+0.6
3,865,332	+		GFF3825	0.31	+0.2
3,865,332	+		GFF3825	0.31	+2.5
3,865,355	-		GFF3825	0.33	+1.8
3,865,388	-		GFF3825	0.35	+1.6
3,865,393	-		GFF3825	0.35	+0.2
3,865,415	+		GFF3825	0.37	+0.8
3,865,415	-		GFF3825	0.37	-1.6
3,865,430	+		GFF3825	0.37	+1.0
3,865,465	+		GFF3825	0.40	-0.3
3,865,475	+		GFF3825	0.40	-0.7
3,865,493	-		GFF3825	0.41	+0.7
3,865,497	-		GFF3825	0.42	-0.7
3,865,524	+		GFF3825	0.43	+0.1
3,865,525	-		GFF3825	0.43	-0.8
3,865,534	+		GFF3825	0.44	+0.9