Strain Fitness in Sphingobium sp. HT1-2 around GFF3822

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,861,283	+		GFF3820	0.53	+1.2
3,861,283	-		GFF3820	0.53	-1.2
3,861,299	-		GFF3820	0.54	+0.2
3,861,324	+		GFF3820	0.57	-0.2
3,861,334	-		GFF3820	0.58	+0.6
3,861,385	-		GFF3820	0.63	-1.5
3,861,398	-		GFF3820	0.65	-0.5
3,861,405	-		GFF3820	0.65	-0.8
3,861,435	+		GFF3820	0.69	+0.9
3,861,456	+		GFF3820	0.71	-0.1
3,861,464	-		GFF3820	0.72	+1.2
3,861,475	+		GFF3820	0.73	+0.7
3,861,475	+		GFF3820	0.73	-1.2
3,861,483	-		GFF3820	0.74	-1.1
3,861,498	-		GFF3820	0.75	+0.2
3,861,568	+		GFF3820	0.83	-1.7
3,861,569	-		GFF3820	0.83	-0.3
3,861,581	-		GFF3820	0.84	-0.5
3,861,586	-		GFF3820	0.85	-0.4
3,861,586	-		GFF3820	0.85	-0.3
3,861,588	-		GFF3820	0.85	+0.1
3,861,608	-		GFF3820	0.87	-0.9
3,861,609	-		GFF3820	0.87	+0.2
3,861,621	+		GFF3820	0.88	+0.5
3,861,629	-		GFF3820	0.89	+1.2
3,861,629	-		GFF3820	0.89	-1.7
3,861,648	-				-0.8
3,861,660	-				-1.0
3,861,674	-				-0.9
3,861,676	+				-0.2
3,861,684	-				-0.5
3,861,684	-				+0.1
3,861,684	-				-0.9
3,861,694	-				-0.3
3,861,694	-				+0.1
3,861,694	-				+1.2
3,861,694	-				-0.8
3,861,704	-				+0.6
3,861,705	+				-1.0
3,861,705	+				-0.4
3,861,705	+				+1.8
3,861,706	+				-1.8
3,861,709	-				+0.2
3,861,713	-				-1.4
3,861,713	-				-0.4
3,861,713	-				-0.9
3,861,724	+				-0.6
3,861,729	+				-2.1
3,861,732	-				-0.8
3,861,734	+				+0.8
3,861,737	-				-0.9
3,861,737	-				+1.1
3,861,737	-				+1.8
3,862,163	+				+0.7
3,862,166	-				+0.1
3,862,166	-				-0.5
3,862,237	-				+0.9
3,862,241	+				-2.0
3,862,256	+				-1.6
3,862,256	+				-0.5
3,862,264	-				+0.3
3,862,264	-				-0.4
3,862,311	+				-0.5
3,862,311	+				+0.2
3,862,311	+				-0.3
3,862,311	+				-2.3
3,862,311	+				-0.7
3,862,311	+				-0.6
3,862,311	+				-0.6
3,862,311	+				-1.0
3,862,311	+				-0.7
3,862,319	-				-1.3
3,862,319	-				-0.5
3,862,319	-				-1.3
3,862,319	-				+1.4
3,862,319	-				-1.0
3,862,319	-				+1.1
3,862,319	-				+1.1
3,862,319	-				-1.6
3,862,337	-				+0.6
3,862,348	+				+0.8
3,862,351	-				-0.8
3,862,354	-				-0.2
3,862,356	-				-0.4
3,862,368	+				-0.3
3,862,387	-				-0.7
3,862,411	+				+0.1
3,862,418	+				-1.2
3,862,425	+				+0.1
3,862,442	+		GFF3822	0.10	-0.5
3,862,480	+		GFF3822	0.13	+0.6
3,862,488	-		GFF3822	0.13	-0.9
3,862,514	+		GFF3822	0.15	-0.9
3,862,515	-		GFF3822	0.15	+0.2
3,862,530	-		GFF3822	0.16	-0.1
3,862,535	-		GFF3822	0.16	-0.6
3,862,547	+		GFF3822	0.17	-0.3
3,862,555	+		GFF3822	0.17	-0.9
3,862,565	+		GFF3822	0.18	-0.3
3,862,565	+		GFF3822	0.18	-0.3
3,862,573	-		GFF3822	0.19	-0.7
3,862,574	-		GFF3822	0.19	-1.0
3,862,578	-		GFF3822	0.19	-0.7
3,862,662	-		GFF3822	0.24	-0.5
3,862,667	+		GFF3822	0.24	-0.5
3,862,682	+		GFF3822	0.25	-1.5
3,862,683	-		GFF3822	0.25	+0.1
3,862,701	-		GFF3822	0.27	-1.6
3,862,713	-		GFF3822	0.27	+0.1
3,862,720	+		GFF3822	0.28	-1.8
3,862,727	+		GFF3822	0.28	-0.2
3,862,727	+		GFF3822	0.28	-0.9
3,862,727	+		GFF3822	0.28	-0.2
3,862,727	+		GFF3822	0.28	-1.1
3,862,727	+		GFF3822	0.28	-0.8
3,862,727	+		GFF3822	0.28	-0.3
3,862,735	+		GFF3822	0.29	-1.8
3,862,735	-		GFF3822	0.29	-1.8
3,862,753	+		GFF3822	0.30	-0.4
3,862,753	+		GFF3822	0.30	-0.2
3,862,761	-		GFF3822	0.30	-1.6
3,862,767	+		GFF3822	0.31	-0.3
3,862,767	+		GFF3822	0.31	-0.7
3,862,789	+		GFF3822	0.32	+0.6
3,862,848	+		GFF3822	0.36	-2.2
3,862,848	+		GFF3822	0.36	+0.9
3,862,849	+		GFF3822	0.36	-0.2
3,862,856	-		GFF3822	0.36	+0.8
3,862,866	+		GFF3822	0.37	-0.3
3,862,880	+		GFF3822	0.38	+0.6
3,862,884	-		GFF3822	0.38	-0.5
3,862,885	+		GFF3822	0.38	-1.8
3,862,885	+		GFF3822	0.38	-0.8
3,862,885	+		GFF3822	0.38	+0.5
3,862,885	+		GFF3822	0.38	+0.2
3,862,885	+		GFF3822	0.38	-0.7
3,862,885	+		GFF3822	0.38	+0.6
3,862,893	-		GFF3822	0.39	-0.4
3,862,893	-		GFF3822	0.39	+0.6
3,862,893	-		GFF3822	0.39	-0.2
3,862,893	-		GFF3822	0.39	-0.6
3,862,923	+		GFF3822	0.40	-1.0
3,862,931	-		GFF3822	0.41	-0.7
3,862,959	-		GFF3822	0.43	+0.6
3,862,976	+		GFF3822	0.44	-0.6
3,862,991	+		GFF3822	0.45	+0.5
3,863,005	+		GFF3822	0.46	-0.2
3,863,005	+		GFF3822	0.46	-1.1
3,863,010	+		GFF3822	0.46	-0.9
3,863,012	+		GFF3822	0.46	-0.9
3,863,020	-		GFF3822	0.47	-0.3
3,863,026	+		GFF3822	0.47	-0.8
3,863,028	+		GFF3822	0.47	-0.2
3,863,028	+		GFF3822	0.47	+0.7
3,863,034	-		GFF3822	0.47	-0.6
3,863,068	+		GFF3822	0.50	+1.3
3,863,087	-		GFF3822	0.51	-1.6
3,863,096	+		GFF3822	0.51	-1.5
3,863,096	+		GFF3822	0.51	+0.2
3,863,102	-		GFF3822	0.52	-1.2
3,863,104	-		GFF3822	0.52	-0.7
3,863,104	-		GFF3822	0.52	-0.3
3,863,104	-		GFF3822	0.52	-0.5
3,863,121	-		GFF3822	0.53	-1.3
3,863,126	-		GFF3822	0.53	-0.8
3,863,171	+		GFF3822	0.56	-0.9
3,863,176	+		GFF3822	0.56	-0.8
3,863,176	+		GFF3822	0.56	-1.6
3,863,176	+		GFF3822	0.56	-1.5
3,863,176	+		GFF3822	0.56	-1.5
3,863,176	+		GFF3822	0.56	-0.1
3,863,176	+		GFF3822	0.56	-1.0
3,863,176	+		GFF3822	0.56	-0.9
3,863,179	-		GFF3822	0.57	-0.1
3,863,183	+		GFF3822	0.57	-0.7
3,863,183	+		GFF3822	0.57	+0.8
3,863,183	+		GFF3822	0.57	-1.9
3,863,184	-		GFF3822	0.57	+1.1
3,863,184	-		GFF3822	0.57	-0.6
3,863,184	-		GFF3822	0.57	-1.0
3,863,184	-		GFF3822	0.57	-1.6
3,863,191	-		GFF3822	0.57	-0.4
3,863,193	+		GFF3822	0.57	+0.3
3,863,244	+		GFF3822	0.61	-0.1
3,863,275	+		GFF3822	0.63	-0.5
3,863,283	-		GFF3822	0.63	-0.5
3,863,283	-		GFF3822	0.63	-0.9
3,863,283	-		GFF3822	0.63	+0.4
3,863,326	-		GFF3822	0.66	-0.5
3,863,351	+		GFF3822	0.67	-0.7
3,863,351	+		GFF3822	0.67	-1.3
3,863,354	-		GFF3822	0.67	-0.0
3,863,354	-		GFF3822	0.67	+0.8
3,863,374	+		GFF3822	0.69	-0.4
3,863,378	-		GFF3822	0.69	-0.9
3,863,380	+		GFF3822	0.69	+1.6
3,863,380	+		GFF3822	0.69	-0.2
3,863,380	+		GFF3822	0.69	-0.2
3,863,380	+		GFF3822	0.69	-0.9
3,863,416	+		GFF3822	0.71	-0.5
3,863,502	+		GFF3822	0.77	-0.3
3,863,507	+		GFF3822	0.77	-0.8
3,863,507	+		GFF3822	0.77	-0.5
3,863,510	-		GFF3822	0.77	-0.4
3,863,532	-		GFF3822	0.79	-0.2
3,863,595	-		GFF3822	0.83	-0.7
3,863,610	-		GFF3822	0.84	-0.4
3,863,610	-		GFF3822	0.84	-0.4
3,863,613	+		GFF3822	0.84	-1.4
3,863,656	+		GFF3822	0.86	-0.7
3,863,664	-		GFF3822	0.87	-0.1
3,863,671	+		GFF3822	0.87	-2.1
3,863,671	+		GFF3822	0.87	+0.4
3,863,671	+		GFF3822	0.87	-1.6
3,863,671	+		GFF3822	0.87	+0.0
3,863,671	+		GFF3822	0.87	-1.0
3,863,679	-		GFF3822	0.88	-2.0
3,863,679	-		GFF3822	0.88	-0.9
3,863,692	+		GFF3822	0.89	-1.4
3,863,692	+		GFF3822	0.89	-1.0
3,863,693	+		GFF3822	0.89	+0.7
3,863,700	-		GFF3822	0.89	-0.6
3,863,700	-		GFF3822	0.89	-1.2
3,863,700	-		GFF3822	0.89	+0.4
3,863,714	-				-0.1
3,863,728	+				+0.2
3,863,773	-				-1.0
3,863,794	+				-1.2
3,863,794	+				-1.6
3,863,794	+				-0.3
3,863,802	-				-0.6
3,863,802	-				-0.2
3,863,802	-				-0.4
3,863,802	-				-1.0
3,863,804	+				-0.2
3,863,808	-				+0.4
3,863,809	+				+0.5
3,863,809	+				-0.6
3,863,809	+				+0.7
3,863,809	+				-0.3
3,863,817	-				+0.1
3,863,817	-				+1.2
3,863,817	-				+0.5
3,863,817	-				-0.1
3,863,817	-				-1.4
3,863,817	-				+0.6
3,863,817	-				+1.5
3,863,822	-				-0.5
3,863,846	-				-1.2
3,863,864	-				-0.5
3,863,868	+				+0.5
3,863,868	+				-1.2
3,863,869	+				-0.1
3,863,869	+				-0.9
3,863,907	-				-1.2
3,863,907	-				+0.4
3,863,948	-		GFF3823	0.15	-0.6
3,863,948	-		GFF3823	0.15	+0.5
3,863,970	-		GFF3823	0.18	-0.9
3,863,989	+		GFF3823	0.21	-0.3
3,863,997	-		GFF3823	0.22	-0.1
3,863,997	-		GFF3823	0.22	-0.5
3,864,016	+		GFF3823	0.25	-0.8
3,864,024	-		GFF3823	0.26	-1.2
3,864,024	-		GFF3823	0.26	+0.2
3,864,029	+		GFF3823	0.27	-0.9
3,864,058	+		GFF3823	0.31	-0.8
3,864,099	+		GFF3823	0.37	-0.5
3,864,124	-		GFF3823	0.40	-1.2
3,864,136	+		GFF3823	0.42	-1.5
3,864,177	+		GFF3823	0.48	-0.5
3,864,185	-		GFF3823	0.49	-1.8
3,864,192	+		GFF3823	0.50	-0.9
3,864,192	+		GFF3823	0.50	-1.2
3,864,192	+		GFF3823	0.50	-0.7
3,864,192	+		GFF3823	0.50	+0.7
3,864,192	+		GFF3823	0.50	+0.7
3,864,200	-		GFF3823	0.51	-0.2
3,864,200	-		GFF3823	0.51	-1.4
3,864,200	-		GFF3823	0.51	-0.4
3,864,200	-		GFF3823	0.51	-0.7
3,864,200	-		GFF3823	0.51	+0.8
3,864,202	+		GFF3823	0.51	-0.2
3,864,205	-		GFF3823	0.52	+0.5
3,864,238	+		GFF3823	0.56	-0.3
3,864,246	-		GFF3823	0.57	-0.2
3,864,246	-		GFF3823	0.57	-1.3
3,864,267	+		GFF3823	0.60	-0.6
3,864,270	-		GFF3823	0.61	-0.7
3,864,270	-		GFF3823	0.61	-0.9
3,864,270	-		GFF3823	0.61	-0.1
3,864,270	-		GFF3823	0.61	-0.3
3,864,270	-		GFF3823	0.61	-0.8
3,864,273	+		GFF3823	0.61	-0.9
3,864,288	-		GFF3823	0.63	+1.8
3,864,299	+		GFF3823	0.65	-1.2
3,864,299	+		GFF3823	0.65	-0.2
3,864,307	-		GFF3823	0.66	+0.4
3,864,307	-		GFF3823	0.66	+0.9
3,864,307	-		GFF3823	0.66	-1.5
3,864,307	-		GFF3823	0.66	-1.0
3,864,346	+		GFF3823	0.72	-0.8
3,864,356	+		GFF3823	0.73	-1.0
3,864,356	+		GFF3823	0.73	+1.3
3,864,356	+		GFF3823	0.73	-1.4
3,864,356	+		GFF3823	0.73	+1.5
3,864,356	+		GFF3823	0.73	-0.9
3,864,356	+		GFF3823	0.73	+1.0
3,864,364	-		GFF3823	0.74	-0.7
3,864,364	-		GFF3823	0.74	-0.2
3,864,364	-		GFF3823	0.74	+0.7
3,864,364	-		GFF3823	0.74	-0.6
3,864,364	-		GFF3823	0.74	+0.1
3,864,364	-		GFF3823	0.74	-1.3
3,864,379	+		GFF3823	0.76	-1.6
3,864,395	+		GFF3823	0.79	+0.8
3,864,395	+		GFF3823	0.79	+0.6
3,864,403	-		GFF3823	0.80	-1.0
3,864,412	+		GFF3823	0.81	-1.0
3,864,436	+		GFF3823	0.84	-0.6
3,864,444	-		GFF3823	0.86	-0.3
3,864,448	+		GFF3823	0.86	-0.2
3,864,448	+		GFF3823	0.86	+0.3
3,864,448	+		GFF3823	0.86	-0.8
3,864,448	+		GFF3823	0.86	-1.4
3,864,448	+		GFF3823	0.86	-0.1
3,864,448	+		GFF3823	0.86	+0.2
3,864,448	+		GFF3823	0.86	-0.8
3,864,448	+		GFF3823	0.86	-1.0
3,864,448	+		GFF3823	0.86	-0.4
3,864,448	+		GFF3823	0.86	+0.8
3,864,448	+		GFF3823	0.86	-2.5
3,864,448	+		GFF3823	0.86	-0.4
3,864,448	+		GFF3823	0.86	-0.3
3,864,448	+		GFF3823	0.86	-1.0
3,864,448	+		GFF3823	0.86	+0.3
3,864,448	+		GFF3823	0.86	+1.2
3,864,448	+		GFF3823	0.86	-1.0
3,864,448	+		GFF3823	0.86	-0.4
3,864,448	+		GFF3823	0.86	-0.8
3,864,448	+		GFF3823	0.86	-0.7
3,864,448	+		GFF3823	0.86	-0.6
3,864,448	+		GFF3823	0.86	-1.5
3,864,448	+		GFF3823	0.86	-0.2
3,864,448	+		GFF3823	0.86	-1.2
3,864,448	+		GFF3823	0.86	+0.4
3,864,448	+		GFF3823	0.86	+0.1
3,864,448	+		GFF3823	0.86	-1.7
3,864,450	+		GFF3823	0.86	+0.5
3,864,451	-		GFF3823	0.87	-2.0
3,864,451	-		GFF3823	0.87	+0.0
3,864,456	-		GFF3823	0.87	-1.2
3,864,456	-		GFF3823	0.87	-0.8
3,864,456	-		GFF3823	0.87	-0.6
3,864,456	-		GFF3823	0.87	+0.5
3,864,456	-		GFF3823	0.87	-1.5
3,864,456	-		GFF3823	0.87	-1.0
3,864,456	-		GFF3823	0.87	-0.5
3,864,456	-		GFF3823	0.87	-0.5
3,864,456	-		GFF3823	0.87	-0.3
3,864,456	-		GFF3823	0.87	-1.8
3,864,456	-		GFF3823	0.87	-0.9
3,864,456	-		GFF3823	0.87	+0.1
3,864,456	-		GFF3823	0.87	-1.1
3,864,456	-		GFF3823	0.87	-1.4
3,864,456	-		GFF3823	0.87	+1.0
3,864,456	-		GFF3823	0.87	-1.6
3,864,456	-		GFF3823	0.87	-0.3
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