Strain Fitness in Sphingobium sp. HT1-2 around GFF3818

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,859,189	-		GFF3817	0.23	-1.5
3,859,189	-		GFF3817	0.23	-1.5
3,859,194	-		GFF3817	0.24	-1.3
3,859,214	+		GFF3817	0.26	+1.1
3,859,217	+		GFF3817	0.26	+0.6
3,859,220	-		GFF3817	0.26	-0.5
3,859,222	+		GFF3817	0.26	-1.2
3,859,228	-		GFF3817	0.27	-0.6
3,859,275	-		GFF3817	0.32	-0.1
3,859,292	+		GFF3817	0.33	-0.6
3,859,292	+		GFF3817	0.33	+0.8
3,859,300	-		GFF3817	0.34	-0.5
3,859,300	-		GFF3817	0.34	-1.8
3,859,319	-		GFF3817	0.36	-1.9
3,859,325	-		GFF3817	0.37	+0.6
3,859,334	-		GFF3817	0.38	+1.2
3,859,358	-		GFF3817	0.40	+0.6
3,859,366	-		GFF3817	0.41	-0.6
3,859,368	-		GFF3817	0.41	-1.1
3,859,378	+		GFF3817	0.42	-2.9
3,859,443	-		GFF3817	0.49	-0.7
3,859,443	-		GFF3817	0.49	-1.0
3,859,448	+		GFF3817	0.49	-0.3
3,859,456	-		GFF3817	0.50	-1.3
3,859,456	-		GFF3817	0.50	-0.3
3,859,456	-		GFF3817	0.50	+1.4
3,859,456	-		GFF3817	0.50	+0.8
3,859,483	-		GFF3817	0.53	+0.6
3,859,520	-		GFF3817	0.56	-0.2
3,859,552	+		GFF3817	0.60	-1.4
3,859,552	+		GFF3817	0.60	-0.3
3,859,552	+		GFF3817	0.60	-0.6
3,859,566	+		GFF3817	0.61	+0.7
3,859,567	+		GFF3817	0.61	-1.8
3,859,575	+		GFF3817	0.62	-0.2
3,859,575	+		GFF3817	0.62	+1.3
3,859,584	+		GFF3817	0.63	-1.7
3,859,590	-		GFF3817	0.63	-1.1
3,859,646	+		GFF3817	0.69	+0.7
3,859,646	+		GFF3817	0.69	+1.4
3,859,656	-		GFF3817	0.70	+1.5
3,859,672	+		GFF3817	0.72	-0.3
3,859,680	-		GFF3817	0.72	+0.3
3,859,680	-		GFF3817	0.72	-0.8
3,859,680	-		GFF3817	0.72	-1.5
3,859,682	+		GFF3817	0.73	-1.3
3,859,709	+		GFF3817	0.75	-0.5
3,859,709	+		GFF3817	0.75	+0.8
3,859,709	+		GFF3817	0.75	+0.4
3,859,713	+		GFF3817	0.76	-1.0
3,859,717	-		GFF3817	0.76	+0.6
3,859,755	-		GFF3817	0.80	-0.3
3,859,777	+		GFF3817	0.82	+0.9
3,859,784	+		GFF3817	0.83	-0.8
3,859,785	-		GFF3817	0.83	-1.9
3,859,786	-		GFF3817	0.83	-0.9
3,859,792	-		GFF3817	0.84	+0.3
3,859,797	+		GFF3817	0.84	+0.4
3,859,805	-		GFF3817	0.85	-0.5
3,859,829	+		GFF3817	0.87	-1.3
3,859,829	+		GFF3817	0.87	-1.1
3,859,829	+		GFF3817	0.87	-1.4
3,859,829	+		GFF3817	0.87	+0.2
3,859,837	-		GFF3817	0.88	+0.9
3,859,861	+				-0.8
3,859,861	+				-1.2
3,859,864	-				-0.9
3,859,869	-				-0.9
3,859,869	-				-1.2
3,859,872	+				-1.0
3,859,880	-				-0.0
3,859,968	-				-0.1
3,859,990	+				-1.5
3,859,990	+				+0.1
3,860,032	+				-0.7
3,860,034	+				-2.7
3,860,041	+				-0.3
3,860,042	-				-0.3
3,860,091	+				+1.0
3,860,091	+				-0.2
3,860,109	+				-0.2
3,860,142	+		GFF3818	0.18	+0.1
3,860,143	-		GFF3818	0.18	+0.7
3,860,145	+		GFF3818	0.19	-0.6
3,860,169	+		GFF3818	0.27	-0.3
3,860,194	-		GFF3818	0.37	-0.2
3,860,237	-		GFF3818	0.52	-1.9
3,860,248	+		GFF3818	0.56	-0.4
3,860,283	+		GFF3818	0.69	+1.4
3,860,283	+		GFF3818	0.69	+0.6
3,860,283	+		GFF3818	0.69	-0.4
3,860,283	+		GFF3818	0.69	-0.9
3,860,291	-		GFF3818	0.72	-0.4
3,860,297	-		GFF3818	0.74	+0.5
3,860,313	+		GFF3818	0.80	-0.6
3,860,313	+		GFF3818	0.80	-0.2
3,860,313	+		GFF3818	0.80	-1.3
3,860,315	+		GFF3818	0.81	-0.2
3,860,315	-		GFF3818	0.81	-2.7
3,860,321	-		GFF3818	0.83	-0.7
3,860,321	-		GFF3818	0.83	-0.7
3,860,323	-		GFF3818	0.84	-0.9
3,860,337	+		GFF3818	0.89	-0.7
3,860,370	+				-1.3
3,860,383	-				-0.4
3,860,437	-		GFF3819	0.18	-0.5
3,860,437	-		GFF3819	0.18	-0.2
3,860,481	+		GFF3819	0.29	-2.3
3,860,503	+		GFF3819	0.35	-0.4
3,860,523	+		GFF3819	0.40	-1.5
3,860,523	+		GFF3819	0.40	+0.8
3,860,531	-		GFF3819	0.41	-0.2
3,860,537	+		GFF3819	0.43	-0.9
3,860,544	+		GFF3819	0.45	-1.0
3,860,545	+		GFF3819	0.45	-0.9
3,860,546	+		GFF3819	0.45	-1.1
3,860,567	-		GFF3819	0.50	-0.2
3,860,569	+		GFF3819	0.51	+1.4
3,860,581	+		GFF3819	0.54	+0.7
3,860,609	+		GFF3819	0.61	-1.7
3,860,738	+				+0.7
3,860,743	+				+0.3
3,860,745	-				+0.8
3,860,818	-				+0.7
3,860,823	-				+0.8
3,860,825	+				+0.9
3,860,825	+				-1.3
3,860,825	+				+0.5
3,860,825	+				-0.2
3,860,825	+				-0.2
3,860,825	+				+1.6
3,860,825	+				+0.7
3,860,825	+				-0.9
3,860,825	+				+0.9
3,860,825	+				-0.3
3,860,825	+				-0.4
3,860,825	+				-0.5
3,860,825	+				-0.6
3,860,833	+				-0.2
3,860,833	-				-0.5
3,860,833	-				+0.5
3,860,833	-				-0.9
3,860,833	-				+0.7
3,860,833	-				+1.1
3,860,833	-				+1.1
3,860,833	-				-2.0
3,860,833	-				+0.2
3,860,833	-				-0.2
3,860,833	-				-0.4
3,860,833	-				-0.5
3,860,833	-				+0.6
3,860,833	-				-0.2
3,860,835	+				+1.2
3,860,835	+				-0.4
3,860,835	+				-0.1
3,860,835	+				-0.3
3,860,835	+				-0.2
3,860,835	+				-0.8
3,860,835	+				-1.0
3,860,835	+				-1.6
3,860,835	+				-0.9
3,860,835	+				+1.0
3,860,835	+				-0.3
3,860,835	+				-0.2
3,860,843	-				-0.8
3,860,843	-				-0.2
3,860,843	-				-0.0
3,860,843	-				+1.0
3,860,843	-				+0.6
3,860,843	-				+0.4
3,860,843	-				-1.3
3,860,843	-				-0.2
3,860,843	-				+0.1
3,860,843	-				+1.3
3,860,843	-				-1.2
3,860,843	-				-0.5
3,860,843	-				-0.2
3,860,843	-				-1.2
3,860,843	-				-1.7
3,860,843	-				-0.3
3,860,843	-				+0.1
3,860,870	-				-0.8
3,860,933	-		GFF3820	0.15	+0.6
3,860,952	+		GFF3820	0.17	-0.3
3,860,952	+		GFF3820	0.17	+0.6
3,860,960	-		GFF3820	0.18	-1.4
3,860,965	+		GFF3820	0.19	-1.8
3,860,965	+		GFF3820	0.19	-0.3
3,860,992	-		GFF3820	0.22	-0.6
3,860,997	-		GFF3820	0.22	-1.1
3,861,007	+		GFF3820	0.23	+1.0
3,861,007	+		GFF3820	0.23	-1.2
3,861,007	+		GFF3820	0.23	+0.5
3,861,015	-		GFF3820	0.24	+0.6
3,861,015	-		GFF3820	0.24	-1.2
3,861,015	-		GFF3820	0.24	+0.3
3,861,017	-		GFF3820	0.24	-1.4
3,861,019	+		GFF3820	0.24	-0.4
3,861,019	+		GFF3820	0.24	+0.3
3,861,027	-		GFF3820	0.25	-1.3
3,861,030	+		GFF3820	0.26	-1.7
3,861,038	+		GFF3820	0.26	-0.6
3,861,046	-		GFF3820	0.27	-0.5
3,861,062	+		GFF3820	0.29	-2.6
3,861,065	-		GFF3820	0.29	-0.2
3,861,070	-		GFF3820	0.30	-0.3
3,861,092	-		GFF3820	0.32	-1.7
3,861,094	+		GFF3820	0.32	+0.6
3,861,102	-		GFF3820	0.33	-0.5
3,861,124	+		GFF3820	0.36	-0.6
3,861,124	+		GFF3820	0.36	-0.6
3,861,124	+		GFF3820	0.36	+0.7
3,861,128	-		GFF3820	0.36	+0.8
3,861,132	-		GFF3820	0.36	-0.6
3,861,132	-		GFF3820	0.36	+0.6
3,861,150	+		GFF3820	0.38	+0.5
3,861,163	-		GFF3820	0.40	-0.5
3,861,168	-		GFF3820	0.40	+0.3
3,861,185	+		GFF3820	0.42	-1.3
3,861,190	+		GFF3820	0.43	-0.2
3,861,192	+		GFF3820	0.43	-0.2
3,861,201	+		GFF3820	0.44	-1.5
3,861,201	+		GFF3820	0.44	+0.5
3,861,201	+		GFF3820	0.44	+0.4
3,861,201	+		GFF3820	0.44	-0.5
3,861,209	-		GFF3820	0.45	+1.3
3,861,209	-		GFF3820	0.45	-0.7
3,861,209	-		GFF3820	0.45	-1.1
3,861,209	-		GFF3820	0.45	+0.5
3,861,209	-		GFF3820	0.45	+0.1
3,861,211	+		GFF3820	0.45	+0.5
3,861,231	+		GFF3820	0.47	-0.3
3,861,262	-		GFF3820	0.50	-0.0
3,861,275	+		GFF3820	0.52	-0.3
3,861,275	+		GFF3820	0.52	+0.2
3,861,275	+		GFF3820	0.52	-0.1
3,861,275	+		GFF3820	0.52	-0.0
3,861,275	+		GFF3820	0.52	-0.3
3,861,275	+		GFF3820	0.52	-1.8
3,861,283	+		GFF3820	0.53	+1.2
3,861,283	-		GFF3820	0.53	-1.2
3,861,299	-		GFF3820	0.54	+0.2
3,861,324	+		GFF3820	0.57	-0.2
3,861,334	-		GFF3820	0.58	+0.6