Strain Fitness in Sphingobium sp. HT1-2 around GFF3628

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,675,775	+				-0.4
3,675,775	+				+2.8
3,675,775	+				-0.5
3,675,783	-				-0.3
3,675,794	+				+0.1
3,675,851	-				-0.7
3,675,863	+				+1.8
3,675,863	+				-0.2
3,675,863	+				+1.6
3,675,863	+				-1.5
3,675,863	+				-2.1
3,675,871	-				-0.2
3,675,876	-				-0.3
3,675,887	+				-1.4
3,675,901	+				-1.1
3,675,901	+				+0.4
3,675,901	+				+1.5
3,675,901	+				-1.1
3,675,909	-		GFF3627	0.10	-1.3
3,675,916	+		GFF3627	0.11	+0.6
3,675,998	+		GFF3627	0.19	+0.2
3,675,998	+		GFF3627	0.19	-0.6
3,676,013	+		GFF3627	0.21	-1.1
3,676,018	+		GFF3627	0.22	-1.2
3,676,018	+		GFF3627	0.22	-1.6
3,676,018	+		GFF3627	0.22	+0.9
3,676,026	-		GFF3627	0.22	+0.7
3,676,026	-		GFF3627	0.22	+0.5
3,676,031	-		GFF3627	0.23	-0.9
3,676,031	-		GFF3627	0.23	-0.7
3,676,031	-		GFF3627	0.23	-0.8
3,676,040	+		GFF3627	0.24	-0.1
3,676,076	-		GFF3627	0.28	-0.8
3,676,144	-		GFF3627	0.35	+0.3
3,676,190	+		GFF3627	0.40	+0.8
3,676,190	+		GFF3627	0.40	-0.3
3,676,198	-		GFF3627	0.40	+0.3
3,676,207	+		GFF3627	0.41	-0.2
3,676,232	+		GFF3627	0.44	-1.1
3,676,240	-		GFF3627	0.45	-0.0
3,676,242	+		GFF3627	0.45	-0.5
3,676,242	+		GFF3627	0.45	+0.7
3,676,250	-		GFF3627	0.46	+1.6
3,676,266	+		GFF3627	0.48	+2.0
3,676,272	+		GFF3627	0.48	-0.4
3,676,273	+		GFF3627	0.48	-1.0
3,676,280	-		GFF3627	0.49	+0.4
3,676,280	-		GFF3627	0.49	-0.3
3,676,280	-		GFF3627	0.49	-0.1
3,676,280	-		GFF3627	0.49	+0.5
3,676,311	+		GFF3627	0.52	+1.1
3,676,311	+		GFF3627	0.52	+2.4
3,676,311	+		GFF3627	0.52	+1.3
3,676,311	+		GFF3627	0.52	+2.1
3,676,324	+		GFF3627	0.54	+0.2
3,676,324	+		GFF3627	0.54	-0.2
3,676,324	+		GFF3627	0.54	+0.1
3,676,375	-		GFF3627	0.59	-0.3
3,676,375	-		GFF3627	0.59	+0.5
3,676,381	-		GFF3627	0.60	+2.8
3,676,381	-		GFF3627	0.60	-0.1
3,676,381	-		GFF3627	0.60	-1.9
3,676,391	-		GFF3627	0.61	+0.1
3,676,395	-		GFF3627	0.61	+1.4
3,676,501	-		GFF3627	0.72	-0.8
3,676,501	-		GFF3627	0.72	+2.9
3,676,524	-		GFF3627	0.75	-0.4
3,676,524	-		GFF3627	0.75	+1.8
3,676,524	-		GFF3627	0.75	+1.1
3,676,525	-		GFF3627	0.75	+0.5
3,676,535	+		GFF3627	0.76	+0.1
3,676,588	-		GFF3627	0.81	-1.1
3,676,632	+		GFF3627	0.86	-1.9
3,676,632	+		GFF3627	0.86	-0.5
3,676,639	+		GFF3627	0.87	+0.3
3,676,640	-		GFF3627	0.87	-0.8
3,676,645	-		GFF3627	0.87	+0.1
3,676,668	+		GFF3627	0.90	-0.0
3,676,683	+				+1.6
3,676,706	+				+0.5
3,676,727	-				+1.2
3,676,791	-				-0.8
3,676,791	-				+1.1
3,676,797	-				-0.3
3,676,808	+				+0.4
3,676,878	+		GFF3628	0.10	+0.9
3,676,902	-		GFF3628	0.12	-1.8
3,676,934	+		GFF3628	0.15	+0.7
3,676,940	-		GFF3628	0.16	-0.2
3,676,940	-		GFF3628	0.16	-0.1
3,676,940	-		GFF3628	0.16	-1.9
3,676,940	-		GFF3628	0.16	-0.8
3,676,942	+		GFF3628	0.16	+0.2
3,676,942	+		GFF3628	0.16	+2.4
3,676,942	-		GFF3628	0.16	+0.5
3,676,950	-		GFF3628	0.17	-0.6
3,676,985	-		GFF3628	0.20	-0.4
3,676,985	-		GFF3628	0.20	-1.7
3,676,990	-		GFF3628	0.20	-1.1
3,676,998	+		GFF3628	0.21	-1.9
3,677,042	+		GFF3628	0.25	+2.4
3,677,077	+		GFF3628	0.28	+1.4
3,677,081	+		GFF3628	0.29	-1.2
3,677,147	-		GFF3628	0.35	-1.6
3,677,234	+		GFF3628	0.43	-0.9
3,677,234	+		GFF3628	0.43	+1.2
3,677,239	+		GFF3628	0.43	+1.0
3,677,239	+		GFF3628	0.43	+0.6
3,677,244	+		GFF3628	0.44	+1.2
3,677,244	+		GFF3628	0.44	-0.2
3,677,244	+		GFF3628	0.44	-0.4
3,677,244	+		GFF3628	0.44	-1.3
3,677,247	-		GFF3628	0.44	-1.4
3,677,248	-		GFF3628	0.44	+2.3
3,677,252	-		GFF3628	0.45	+0.4
3,677,252	-		GFF3628	0.45	+1.0
3,677,252	-		GFF3628	0.45	-0.2
3,677,286	-		GFF3628	0.48	-0.3
3,677,373	+		GFF3628	0.56	-0.8
3,677,392	+		GFF3628	0.57	+0.1
3,677,420	-		GFF3628	0.60	-0.2
3,677,477	+		GFF3628	0.65	-0.7
3,677,479	+		GFF3628	0.65	-0.7
3,677,479	+		GFF3628	0.65	-0.9
3,677,487	-		GFF3628	0.66	-0.1
3,677,488	+		GFF3628	0.66	+1.5
3,677,514	+		GFF3628	0.69	-1.6
3,677,538	+		GFF3628	0.71	+2.3
3,677,543	-		GFF3628	0.71	+0.4
3,677,560	+		GFF3628	0.73	+0.5
3,677,570	+		GFF3628	0.74	+2.2
3,677,578	+		GFF3628	0.74	-0.7
3,677,772	-				+1.1
3,677,772	-				-1.7
3,677,851	+				-1.6
3,677,853	+				-0.1
3,677,928	+				-0.1
3,677,935	-				-0.9
3,677,952	-				-1.7
3,677,973	-				-0.8
3,677,981	+				-0.4
3,678,005	+		GFF3629	0.10	+0.3
3,678,005	+		GFF3629	0.10	+1.4
3,678,005	+		GFF3629	0.10	+0.4
3,678,005	+		GFF3629	0.10	-0.1
3,678,064	-		GFF3629	0.15	+1.0
3,678,086	-		GFF3629	0.17	-0.7
3,678,086	-		GFF3629	0.17	+0.6
3,678,134	+		GFF3629	0.20	+0.6
3,678,238	+		GFF3629	0.29	-1.2
3,678,245	+		GFF3629	0.29	-0.1
3,678,278	+		GFF3629	0.32	-1.3
3,678,278	+		GFF3629	0.32	-1.1
3,678,278	+		GFF3629	0.32	+1.2
3,678,284	-		GFF3629	0.32	+0.4
3,678,286	+		GFF3629	0.32	+1.9
3,678,286	-		GFF3629	0.32	-0.4
3,678,286	-		GFF3629	0.32	+1.1
3,678,286	-		GFF3629	0.32	-0.1
3,678,286	-		GFF3629	0.32	-1.1
3,678,320	+		GFF3629	0.35	-1.5
3,678,320	-		GFF3629	0.35	+1.2
3,678,321	+		GFF3629	0.35	+0.9
3,678,372	+		GFF3629	0.39	+1.3
3,678,372	+		GFF3629	0.39	-0.3
3,678,390	-		GFF3629	0.41	+1.2
3,678,404	-		GFF3629	0.42	+0.5
3,678,415	+		GFF3629	0.43	-0.6
3,678,423	-		GFF3629	0.43	-0.0
3,678,428	-		GFF3629	0.44	-0.1
3,678,442	+		GFF3629	0.45	-1.5
3,678,445	-		GFF3629	0.45	-2.0
3,678,452	+		GFF3629	0.46	-1.4
3,678,460	-		GFF3629	0.46	-1.1
3,678,477	-		GFF3629	0.48	-0.8
3,678,481	+		GFF3629	0.48	-0.6
3,678,481	+		GFF3629	0.48	-0.4
3,678,489	-		GFF3629	0.48	+0.6
3,678,489	-		GFF3629	0.48	+0.6
3,678,489	-		GFF3629	0.48	-0.3
3,678,490	+		GFF3629	0.49	-0.3
3,678,490	+		GFF3629	0.49	+0.3
3,678,498	-		GFF3629	0.49	-1.8
3,678,500	+		GFF3629	0.49	+0.5
3,678,505	+		GFF3629	0.50	+0.0
3,678,508	-		GFF3629	0.50	+0.5
3,678,508	-		GFF3629	0.50	+0.2
3,678,510	+		GFF3629	0.50	+1.6
3,678,513	-		GFF3629	0.50	+0.5
3,678,513	-		GFF3629	0.50	-1.0
3,678,540	+		GFF3629	0.52	-0.6
3,678,540	+		GFF3629	0.52	-0.8
3,678,547	-		GFF3629	0.53	-0.1
3,678,547	-		GFF3629	0.53	-1.0
3,678,573	+		GFF3629	0.55	-0.8
3,678,603	-		GFF3629	0.57	+1.1
3,678,605	+		GFF3629	0.58	-0.8
3,678,613	-		GFF3629	0.58	-0.8
3,678,621	+		GFF3629	0.59	-1.1
3,678,630	+		GFF3629	0.60	+0.2
3,678,634	-		GFF3629	0.60	-1.4
3,678,634	-		GFF3629	0.60	-0.4
3,678,644	-		GFF3629	0.61	+1.8
3,678,701	-		GFF3629	0.65	+0.3
3,678,745	-		GFF3629	0.69	-0.4
3,678,784	+		GFF3629	0.72	-0.1
3,678,792	+		GFF3629	0.72	+0.3
3,678,799	+		GFF3629	0.73	+0.7
3,678,800	-		GFF3629	0.73	-1.4
3,678,817	-		GFF3629	0.74	+0.9
3,678,843	+		GFF3629	0.76	-1.6