Strain Fitness in Sphingobium sp. HT1-2 around GFF3370

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,414,733	+		GFF3367	0.61	-1.7
3,414,746	-		GFF3367	0.63	-1.1
3,414,746	-		GFF3367	0.63	+0.2
3,414,747	-		GFF3367	0.63	-0.4
3,414,813	+		GFF3367	0.76	-0.7
3,414,819	+		GFF3367	0.77	-0.1
3,414,832	+		GFF3367	0.79	+0.5
3,414,849	+		GFF3367	0.83	-0.7
3,414,849	+		GFF3367	0.83	-0.7
3,414,852	-		GFF3367	0.83	+0.1
3,414,857	-		GFF3367	0.84	-0.1
3,414,857	-		GFF3367	0.84	+0.6
3,414,857	-		GFF3367	0.84	-0.3
3,414,857	-		GFF3367	0.84	+0.5
3,414,857	-		GFF3367	0.84	-1.1
3,414,857	-		GFF3367	0.84	-0.4
3,414,857	-		GFF3367	0.84	-0.7
3,414,857	-		GFF3367	0.84	-0.4
3,414,857	-		GFF3367	0.84	-1.4
3,414,857	-		GFF3367	0.84	+0.6
3,414,923	+				+1.1
3,414,929	+				-1.2
3,414,935	+				-2.3
3,414,937	-				+0.1
3,414,943	-				-0.9
3,414,943	-				-1.3
3,414,953	-				+0.6
3,414,971	+				-0.6
3,414,979	-				-0.3
3,414,989	-				-0.3
3,415,069	-		GFF3368	0.29	+0.1
3,415,071	+		GFF3368	0.30	-0.5
3,415,086	-		GFF3368	0.35	-1.4
3,415,095	-		GFF3368	0.38	-0.3
3,415,115	-		GFF3368	0.45	+1.0
3,415,117	+		GFF3368	0.46	+0.1
3,415,124	+		GFF3368	0.48	-1.0
3,415,124	+		GFF3368	0.48	+0.7
3,415,125	-		GFF3368	0.48	-1.9
3,415,125	-		GFF3368	0.48	-0.3
3,415,125	-		GFF3368	0.48	-0.4
3,415,139	+		GFF3368	0.53	+0.1
3,415,139	+		GFF3368	0.53	+1.1
3,415,139	+		GFF3368	0.53	+0.3
3,415,139	+		GFF3368	0.53	-0.1
3,415,139	+		GFF3368	0.53	+0.8
3,415,139	+		GFF3368	0.53	-1.3
3,415,139	+		GFF3368	0.53	+1.0
3,415,139	+		GFF3368	0.53	+0.9
3,415,139	+		GFF3368	0.53	+0.7
3,415,139	+		GFF3368	0.53	-0.6
3,415,139	+		GFF3368	0.53	-0.3
3,415,139	+		GFF3368	0.53	+0.7
3,415,139	+		GFF3368	0.53	-0.7
3,415,139	+		GFF3368	0.53	-0.2
3,415,139	+		GFF3368	0.53	-0.8
3,415,142	-		GFF3368	0.54	+0.1
3,415,147	-		GFF3368	0.56	+0.6
3,415,147	-		GFF3368	0.56	-0.3
3,415,147	-		GFF3368	0.56	-0.6
3,415,147	-		GFF3368	0.56	-1.0
3,415,147	-		GFF3368	0.56	-1.3
3,415,147	-		GFF3368	0.56	-0.8
3,415,147	-		GFF3368	0.56	+0.2
3,415,147	-		GFF3368	0.56	-0.7
3,415,147	-		GFF3368	0.56	+0.0
3,415,147	-		GFF3368	0.56	-1.0
3,415,149	+		GFF3368	0.57	+0.7
3,415,149	+		GFF3368	0.57	+0.2
3,415,149	+		GFF3368	0.57	-0.3
3,415,149	+		GFF3368	0.57	-2.1
3,415,150	+		GFF3368	0.57	-0.1
3,415,157	-		GFF3368	0.59	+0.1
3,415,160	+		GFF3368	0.60	+0.2
3,415,160	+		GFF3368	0.60	+0.2
3,415,160	+		GFF3368	0.60	-0.6
3,415,163	-		GFF3368	0.62	+0.9
3,415,168	-		GFF3368	0.63	+0.4
3,415,168	-		GFF3368	0.63	+0.1
3,415,168	-		GFF3368	0.63	-0.7
3,415,177	+		GFF3368	0.66	-1.3
3,415,185	-		GFF3368	0.69	+0.9
3,415,236	+		GFF3368	0.87	+0.4
3,415,236	+		GFF3368	0.87	-0.6
3,415,244	-		GFF3368	0.89	-0.3
3,415,244	-		GFF3368	0.89	-0.0
3,415,249	+				+0.3
3,415,249	+				+0.8
3,415,249	+				+1.3
3,415,257	-				-2.7
3,415,257	-				+1.3
3,415,257	-				+0.6
3,415,264	-				-0.4
3,415,269	+				-0.3
3,415,269	+				-0.5
3,415,269	+				-1.6
3,415,269	+				+0.3
3,415,270	-				-0.6
3,415,318	-				+0.8
3,415,355	+		GFF3369	0.25	-0.6
3,415,362	+		GFF3369	0.30	+0.7
3,415,370	-		GFF3369	0.36	-0.4
3,415,370	-		GFF3369	0.36	+0.3
3,415,372	-		GFF3369	0.38	+1.3
3,415,394	+		GFF3369	0.54	+0.6
3,415,395	-		GFF3369	0.54	+0.5
3,415,397	-		GFF3369	0.56	+0.5
3,415,405	-		GFF3369	0.62	-1.3
3,415,427	+		GFF3369	0.78	-1.4
3,415,456	+				-1.8
3,415,464	-				-0.9
3,415,474	-				-0.3
3,415,477	-				-0.4
3,415,516	+				-0.3
3,415,526	+				-1.0
3,415,531	+				+0.1
3,415,532	+				-0.7
3,415,539	-				-1.0
3,415,539	-				-0.3
3,415,539	-				+0.8
3,415,553	+				-0.3
3,415,561	-				-1.0
3,415,561	-				+1.3
3,415,579	+				-1.3
3,415,580	-				+0.9
3,415,668	-				-0.4
3,415,678	+				-0.4
3,415,705	+				-0.6
3,415,705	+				+0.1
3,415,718	-				+1.4
3,415,733	+				+0.1
3,415,749	+		GFF3370	0.11	-0.3
3,415,757	-		GFF3370	0.14	-0.4
3,415,760	+		GFF3370	0.15	-0.2
3,415,769	+		GFF3370	0.18	-0.4
3,415,795	+		GFF3370	0.29	+1.6
3,415,796	-		GFF3370	0.29	-0.4
3,415,796	-		GFF3370	0.29	-0.7
3,415,801	-		GFF3370	0.31	+1.7
3,415,816	-		GFF3370	0.37	-1.5
3,415,845	-		GFF3370	0.48	-0.3
3,415,891	+		GFF3370	0.66	+0.6
3,415,891	+		GFF3370	0.66	-1.2
3,415,899	-		GFF3370	0.69	+1.0
3,415,901	-		GFF3370	0.70	+1.3
3,415,916	+		GFF3370	0.76	-0.5
3,415,918	-		GFF3370	0.77	-0.7
3,415,920	+		GFF3370	0.78	-1.6
3,415,921	+		GFF3370	0.78	-0.5
3,415,945	-		GFF3370	0.87	+0.3
3,415,978	-				-0.6
3,416,004	-				+0.7
3,416,004	-				-0.6
3,416,005	+				-0.1
3,416,011	+				-1.0
3,416,026	-				+0.2
3,416,064	+				+0.6
3,416,064	+				-0.5
3,416,069	+				-1.2
3,416,071	+				-1.0
3,416,071	+				-0.7
3,416,079	-				-1.3
3,416,117	-				-0.0
3,416,119	+				+0.1
3,416,135	-		GFF3371	0.16	-1.2
3,416,146	+		GFF3371	0.23	-1.1
3,416,150	-		GFF3371	0.26	+1.2
3,416,154	-		GFF3371	0.29	-0.2
3,416,154	-		GFF3371	0.29	-0.5
3,416,154	-		GFF3371	0.29	+0.6
3,416,154	-		GFF3371	0.29	+0.4
3,416,166	+		GFF3371	0.37	+0.8
3,416,166	+		GFF3371	0.37	-0.1
3,416,166	+		GFF3371	0.37	-0.3
3,416,166	+		GFF3371	0.37	-1.0
3,416,166	+		GFF3371	0.37	-0.3
3,416,166	+		GFF3371	0.37	+1.5
3,416,167	+		GFF3371	0.37	+0.6
3,416,167	+		GFF3371	0.37	-0.4
3,416,167	-		GFF3371	0.37	+1.0
3,416,174	-		GFF3371	0.42	-0.5
3,416,174	-		GFF3371	0.42	-1.6
3,416,174	-		GFF3371	0.42	+0.2
3,416,174	-		GFF3371	0.42	-1.3
3,416,174	-		GFF3371	0.42	-0.6
3,416,174	-		GFF3371	0.42	+1.3
3,416,174	-		GFF3371	0.42	-0.4
3,416,174	-		GFF3371	0.42	-0.3
3,416,174	-		GFF3371	0.42	-0.5
3,416,232	-		GFF3371	0.82	+1.8
3,416,242	-		GFF3371	0.88	+0.9
3,416,244	+				-0.4
3,416,249	+				-0.5
3,416,249	+				+0.2
3,416,263	+				+1.8
3,416,268	+				-0.0
3,416,271	-				-0.5
3,416,271	-				+0.5
3,416,273	+				+1.4
3,416,276	-				+0.7
3,416,286	-				+0.6
3,416,286	-				+0.4
3,416,286	-				+1.7
3,416,291	-				-0.1
3,416,291	-				+0.3
3,416,296	+				-1.0
3,416,296	+				+0.8
3,416,304	-				+1.2
3,416,304	-				-0.5
3,416,304	-				+0.5
3,416,306	+				+0.5
3,416,319	-				-0.0
3,416,321	+				-0.3
3,416,324	-				+0.6
3,416,324	-				+1.0
3,416,335	+				-0.8
3,416,353	+				-0.3
3,416,353	+				-1.8
3,416,353	+				+0.4
3,416,361	-				+0.5
3,416,361	-				+0.5
3,416,361	-				+0.1
3,416,361	-				-0.7
3,416,361	-				+0.3
3,416,370	-				+1.0
3,416,370	-				+0.8
3,416,408	+		GFF3372	0.12	-1.5
3,416,408	+		GFF3372	0.12	-0.3
3,416,408	+		GFF3372	0.12	+0.5
3,416,416	-		GFF3372	0.15	-0.2
3,416,416	-		GFF3372	0.15	-0.4
3,416,416	-		GFF3372	0.15	+0.7
3,416,416	-		GFF3372	0.15	+0.7
3,416,416	-		GFF3372	0.15	-1.2
3,416,422	+		GFF3372	0.18	-2.4
3,416,461	-		GFF3372	0.33	-1.6
3,416,461	-		GFF3372	0.33	+0.6
3,416,475	-		GFF3372	0.38	+0.9
3,416,476	-		GFF3372	0.38	+1.4
3,416,486	-		GFF3372	0.42	+1.8
3,416,503	+		GFF3372	0.49	+0.2
3,416,510	+		GFF3372	0.51	+0.5
3,416,510	+		GFF3372	0.51	+0.8
3,416,511	-		GFF3372	0.52	-1.5
3,416,543	-		GFF3372	0.64	-0.4
3,416,568	+		GFF3372	0.74	-0.4
3,416,568	+		GFF3372	0.74	+0.4
3,416,576	-		GFF3372	0.77	-0.3
3,416,592	+		GFF3372	0.83	-0.9
3,416,598	+		GFF3372	0.85	-1.0
3,416,600	-		GFF3372	0.86	+0.6
3,416,606	-		GFF3372	0.88	+0.7
3,416,635	-				-0.0
3,416,642	+				+0.2
3,416,642	+				+0.1
3,416,642	+				-0.7
3,416,661	-				-1.0
3,416,696	-				-0.8
3,416,697	+				+1.2
3,416,699	+				-0.0
3,416,700	-				+0.6
3,416,706	-				-1.6
3,416,708	-				-0.2
3,416,722	+				-1.1
3,416,722	+				-0.3
3,416,722	+				+0.5
3,416,722	+				-0.6
3,416,722	+				-1.2
3,416,722	+				-0.1
3,416,722	+				+0.4
3,416,722	+				+0.1
3,416,730	-				-0.2
3,416,730	-				-1.7
3,416,730	-				+0.1
3,416,730	-				+1.2
3,416,730	-				-0.5
3,416,733	+				+1.2
3,416,738	-				-0.8
3,416,739	-				+0.7
3,416,759	+				-0.7
3,416,759	+				-0.1
3,416,760	+				+1.2
3,416,768	-				-1.2
3,416,768	-				-0.6
3,416,786	+		GFF3373	0.10	-1.4
3,416,805	+		GFF3373	0.11	+0.8
3,416,816	+		GFF3373	0.12	-0.7
3,416,829	+		GFF3373	0.13	-1.5
3,416,837	-		GFF3373	0.14	+0.1
3,416,847	+		GFF3373	0.14	-0.3
3,416,849	+		GFF3373	0.14	-0.0
3,416,855	-		GFF3373	0.15	+1.1
3,416,855	-		GFF3373	0.15	-0.3
3,416,855	-		GFF3373	0.15	+0.2
3,416,855	-		GFF3373	0.15	+1.9
3,416,860	+		GFF3373	0.15	+0.9
3,416,879	+		GFF3373	0.17	+0.2
3,416,879	+		GFF3373	0.17	-1.6
3,416,879	+		GFF3373	0.17	-0.4
3,416,879	+		GFF3373	0.17	-1.0
3,416,887	-		GFF3373	0.17	+0.6
3,416,887	-		GFF3373	0.17	-0.4
3,416,887	-		GFF3373	0.17	-1.0
3,416,887	-		GFF3373	0.17	+1.2
3,416,936	+		GFF3373	0.20	-0.5
3,416,936	-		GFF3373	0.20	-0.6
3,416,941	+		GFF3373	0.21	-0.3
3,416,946	+		GFF3373	0.21	-0.1
3,416,949	-		GFF3373	0.21	-0.9
3,416,949	-		GFF3373	0.21	-0.4
3,416,954	-		GFF3373	0.22	-0.4
3,416,954	-		GFF3373	0.22	+0.3
3,416,955	+		GFF3373	0.22	-0.8
3,416,965	+		GFF3373	0.22	-1.2