Strain Fitness in Sphingobium sp. HT1-2 around GFF3366

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,413,225	-				-0.7
3,413,518	+				+0.7
3,413,530	+				+0.4
3,413,583	+				-0.6
3,413,591	-				-0.2
3,413,592	-				-0.3
3,413,603	-				-0.4
3,413,607	+				-0.2
3,413,607	+				+0.1
3,413,607	+				-1.6
3,413,607	+				-0.3
3,413,607	+				+1.5
3,413,607	+				-0.5
3,413,615	-				-0.8
3,413,615	-				+1.3
3,413,664	+				-0.8
3,413,691	-		GFF3364	0.18	+0.7
3,413,714	+		GFF3364	0.26	+0.1
3,413,737	+		GFF3364	0.34	-1.0
3,413,737	+		GFF3364	0.34	+0.3
3,413,737	+		GFF3364	0.34	-0.7
3,413,745	-		GFF3364	0.37	-0.4
3,413,745	-		GFF3364	0.37	-0.6
3,413,838	+		GFF3364	0.69	+1.3
3,413,870	+		GFF3364	0.80	+1.2
3,413,870	+		GFF3364	0.80	-0.7
3,413,875	+		GFF3364	0.82	-0.0
3,413,878	-		GFF3364	0.83	-1.2
3,413,893	-		GFF3364	0.88	-0.2
3,413,908	+				-1.3
3,413,913	+				+0.5
3,413,916	-				+0.5
3,413,916	-				+0.6
3,413,916	-				+0.2
3,413,920	+				-1.5
3,413,920	+				+1.3
3,413,928	-				+1.2
3,413,928	-				-1.4
3,413,928	-				+0.5
3,413,928	-				-0.6
3,413,928	-				-0.4
3,413,928	-				+0.1
3,413,928	-				+1.4
3,413,928	-				+1.7
3,413,928	-				-2.3
3,413,928	-				-0.4
3,413,976	+		GFF3365	0.20	-1.6
3,413,976	+		GFF3365	0.20	-0.8
3,413,976	+		GFF3365	0.20	+0.1
3,413,976	+		GFF3365	0.20	+0.3
3,413,983	+		GFF3365	0.22	+0.3
3,413,984	-		GFF3365	0.23	-0.9
3,413,984	-		GFF3365	0.23	+0.2
3,413,984	-		GFF3365	0.23	+0.8
3,413,984	-		GFF3365	0.23	+0.9
3,413,984	-		GFF3365	0.23	-1.3
3,413,984	-		GFF3365	0.23	-0.4
3,413,986	+		GFF3365	0.24	-0.4
3,414,017	-		GFF3365	0.35	-0.3
3,414,017	-		GFF3365	0.35	-0.4
3,414,025	-		GFF3365	0.38	-0.0
3,414,062	+		GFF3365	0.52	-0.0
3,414,062	+		GFF3365	0.52	+0.6
3,414,062	+		GFF3365	0.52	-0.1
3,414,062	+		GFF3365	0.52	-0.9
3,414,062	+		GFF3365	0.52	-1.3
3,414,062	+		GFF3365	0.52	-1.4
3,414,062	+		GFF3365	0.52	-0.3
3,414,062	+		GFF3365	0.52	-2.0
3,414,062	+		GFF3365	0.52	-0.2
3,414,062	+		GFF3365	0.52	+0.1
3,414,062	+		GFF3365	0.52	+0.4
3,414,062	+		GFF3365	0.52	+0.8
3,414,062	+		GFF3365	0.52	-0.4
3,414,062	+		GFF3365	0.52	+0.1
3,414,062	+		GFF3365	0.52	+0.4
3,414,062	+		GFF3365	0.52	+1.7
3,414,062	+		GFF3365	0.52	+0.8
3,414,070	-		GFF3365	0.55	+0.1
3,414,070	-		GFF3365	0.55	+0.8
3,414,070	-		GFF3365	0.55	+0.1
3,414,070	-		GFF3365	0.55	-0.4
3,414,070	-		GFF3365	0.55	+0.0
3,414,070	-		GFF3365	0.55	-0.8
3,414,070	-		GFF3365	0.55	-0.9
3,414,070	-		GFF3365	0.55	-1.4
3,414,070	-		GFF3365	0.55	-1.4
3,414,070	-		GFF3365	0.55	+0.0
3,414,070	-		GFF3365	0.55	+0.1
3,414,070	-		GFF3365	0.55	-0.3
3,414,072	-		GFF3365	0.56	-0.1
3,414,072	-		GFF3365	0.56	-1.0
3,414,072	-		GFF3365	0.56	-1.3
3,414,095	-		GFF3365	0.64	+1.1
3,414,132	-		GFF3365	0.78	-0.1
3,414,133	+		GFF3365	0.79	+0.4
3,414,141	-		GFF3365	0.82	-0.9
3,414,149	-		GFF3365	0.85	+1.7
3,414,151	+		GFF3365	0.85	+0.6
3,414,161	+		GFF3365	0.89	+0.2
3,414,168	+				-1.3
3,414,174	-				+1.9
3,414,201	-				+0.4
3,414,209	-				-0.8
3,414,210	-				+1.1
3,414,230	-		GFF3366	0.13	-1.7
3,414,237	-		GFF3366	0.17	-0.8
3,414,254	-		GFF3366	0.25	-1.7
3,414,320	+		GFF3366	0.56	-0.7
3,414,389	-		GFF3366	0.89	+0.6
3,414,435	+				+0.6
3,414,446	+				+0.3
3,414,453	-				-0.3
3,414,457	-				+1.1
3,414,469	-		GFF3367	0.11	-1.3
3,414,509	+		GFF3367	0.19	+0.3
3,414,512	-		GFF3367	0.19	-0.9
3,414,517	-		GFF3367	0.20	-0.3
3,414,517	-		GFF3367	0.20	-0.9
3,414,543	+		GFF3367	0.25	-0.4
3,414,551	-		GFF3367	0.27	-0.6
3,414,564	-		GFF3367	0.29	-0.6
3,414,621	+		GFF3367	0.40	+1.0
3,414,622	+		GFF3367	0.40	+2.0
3,414,626	+		GFF3367	0.41	+0.1
3,414,629	-		GFF3367	0.41	-0.8
3,414,629	-		GFF3367	0.41	+1.1
3,414,634	-		GFF3367	0.42	-0.3
3,414,634	-		GFF3367	0.42	-3.1
3,414,649	+		GFF3367	0.45	+0.6
3,414,653	-		GFF3367	0.46	-0.2
3,414,673	+		GFF3367	0.50	-0.4
3,414,673	+		GFF3367	0.50	-1.8
3,414,681	-		GFF3367	0.51	-2.1
3,414,681	-		GFF3367	0.51	-2.1
3,414,699	+		GFF3367	0.54	+1.8
3,414,705	-		GFF3367	0.56	-2.0
3,414,733	+		GFF3367	0.61	-1.7
3,414,746	-		GFF3367	0.63	-1.1
3,414,746	-		GFF3367	0.63	+0.2
3,414,747	-		GFF3367	0.63	-0.4
3,414,813	+		GFF3367	0.76	-0.7
3,414,819	+		GFF3367	0.77	-0.1
3,414,832	+		GFF3367	0.79	+0.5
3,414,849	+		GFF3367	0.83	-0.7
3,414,849	+		GFF3367	0.83	-0.7
3,414,852	-		GFF3367	0.83	+0.1
3,414,857	-		GFF3367	0.84	-0.1
3,414,857	-		GFF3367	0.84	+0.6
3,414,857	-		GFF3367	0.84	-0.3
3,414,857	-		GFF3367	0.84	+0.5
3,414,857	-		GFF3367	0.84	-1.1
3,414,857	-		GFF3367	0.84	-0.4
3,414,857	-		GFF3367	0.84	-0.7
3,414,857	-		GFF3367	0.84	-0.4
3,414,857	-		GFF3367	0.84	-1.4
3,414,857	-		GFF3367	0.84	+0.6
3,414,923	+				+1.1
3,414,929	+				-1.2
3,414,935	+				-2.3
3,414,937	-				+0.1
3,414,943	-				-0.9
3,414,943	-				-1.3
3,414,953	-				+0.6
3,414,971	+				-0.6
3,414,979	-				-0.3
3,414,989	-				-0.3
3,415,069	-		GFF3368	0.29	+0.1
3,415,071	+		GFF3368	0.30	-0.5
3,415,086	-		GFF3368	0.35	-1.4
3,415,095	-		GFF3368	0.38	-0.3
3,415,115	-		GFF3368	0.45	+1.0
3,415,117	+		GFF3368	0.46	+0.1
3,415,124	+		GFF3368	0.48	-1.0
3,415,124	+		GFF3368	0.48	+0.7
3,415,125	-		GFF3368	0.48	-1.9
3,415,125	-		GFF3368	0.48	-0.3
3,415,125	-		GFF3368	0.48	-0.4
3,415,139	+		GFF3368	0.53	+0.1
3,415,139	+		GFF3368	0.53	+1.1
3,415,139	+		GFF3368	0.53	+0.3
3,415,139	+		GFF3368	0.53	-0.1
3,415,139	+		GFF3368	0.53	+0.8
3,415,139	+		GFF3368	0.53	-1.3
3,415,139	+		GFF3368	0.53	+1.0
3,415,139	+		GFF3368	0.53	+0.9
3,415,139	+		GFF3368	0.53	+0.7
3,415,139	+		GFF3368	0.53	-0.6
3,415,139	+		GFF3368	0.53	-0.3
3,415,139	+		GFF3368	0.53	+0.7
3,415,139	+		GFF3368	0.53	-0.7
3,415,139	+		GFF3368	0.53	-0.2
3,415,139	+		GFF3368	0.53	-0.8
3,415,142	-		GFF3368	0.54	+0.1
3,415,147	-		GFF3368	0.56	+0.6
3,415,147	-		GFF3368	0.56	-0.3
3,415,147	-		GFF3368	0.56	-0.6
3,415,147	-		GFF3368	0.56	-1.0
3,415,147	-		GFF3368	0.56	-1.3
3,415,147	-		GFF3368	0.56	-0.8
3,415,147	-		GFF3368	0.56	+0.2
3,415,147	-		GFF3368	0.56	-0.7
3,415,147	-		GFF3368	0.56	+0.0
3,415,147	-		GFF3368	0.56	-1.0
3,415,149	+		GFF3368	0.57	+0.7
3,415,149	+		GFF3368	0.57	+0.2
3,415,149	+		GFF3368	0.57	-0.3
3,415,149	+		GFF3368	0.57	-2.1
3,415,150	+		GFF3368	0.57	-0.1
3,415,157	-		GFF3368	0.59	+0.1
3,415,160	+		GFF3368	0.60	+0.2
3,415,160	+		GFF3368	0.60	+0.2
3,415,160	+		GFF3368	0.60	-0.6
3,415,163	-		GFF3368	0.62	+0.9
3,415,168	-		GFF3368	0.63	+0.4
3,415,168	-		GFF3368	0.63	+0.1
3,415,168	-		GFF3368	0.63	-0.7
3,415,177	+		GFF3368	0.66	-1.3
3,415,185	-		GFF3368	0.69	+0.9
3,415,236	+		GFF3368	0.87	+0.4
3,415,236	+		GFF3368	0.87	-0.6
3,415,244	-		GFF3368	0.89	-0.3
3,415,244	-		GFF3368	0.89	-0.0
3,415,249	+				+0.3
3,415,249	+				+0.8
3,415,249	+				+1.3
3,415,257	-				-2.7
3,415,257	-				+1.3
3,415,257	-				+0.6
3,415,264	-				-0.4
3,415,269	+				-0.3
3,415,269	+				-0.5
3,415,269	+				-1.6
3,415,269	+				+0.3
3,415,270	-				-0.6
3,415,318	-				+0.8
3,415,355	+		GFF3369	0.25	-0.6
3,415,362	+		GFF3369	0.30	+0.7
3,415,370	-		GFF3369	0.36	-0.4
3,415,370	-		GFF3369	0.36	+0.3
3,415,372	-		GFF3369	0.38	+1.3
3,415,394	+		GFF3369	0.54	+0.6
3,415,395	-		GFF3369	0.54	+0.5
3,415,397	-		GFF3369	0.56	+0.5
3,415,405	-		GFF3369	0.62	-1.3