Strain Fitness in Sphingobium sp. HT1-2 around GFF3234

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,286,876	+				-0.8
3,286,876	+				-2.1
3,286,876	+				-1.0
3,286,877	-				-1.2
3,286,877	-				-2.8
3,286,884	-				-0.3
3,286,884	-				+0.7
3,286,884	-				-0.7
3,286,884	-				-0.4
3,286,893	-				-0.4
3,286,902	+				-0.9
3,286,904	-				-0.7
3,286,907	+				-1.0
3,286,910	-				-0.7
3,286,917	-				+1.5
3,286,923	+				+0.1
3,286,923	+				-0.3
3,286,927	-				-0.4
3,286,931	-				-2.1
3,286,931	-				-0.8
3,286,931	-				-1.2
3,286,931	-				+0.3
3,286,986	+				-2.0
3,286,987	+				-2.1
3,286,987	+				+0.2
3,286,987	+				+1.2
3,286,987	+				-1.3
3,286,987	+				-2.0
3,286,988	+				-0.5
3,286,994	+				-0.8
3,286,994	-				-1.0
3,286,994	-				+0.9
3,286,994	-				-0.9
3,286,995	-				-0.3
3,286,995	-				-0.7
3,287,001	-				-1.7
3,287,002	-				+0.2
3,287,012	-				-0.8
3,287,021	+				-0.7
3,287,024	-		GFF3232	0.10	-0.8
3,287,031	-		GFF3232	0.14	+0.5
3,287,034	+		GFF3232	0.15	+0.1
3,287,042	-		GFF3232	0.19	+0.7
3,287,045	+		GFF3232	0.21	+1.4
3,287,104	+		GFF3232	0.50	+0.5
3,287,104	+		GFF3232	0.50	+0.7
3,287,112	+		GFF3232	0.53	-1.8
3,287,113	-		GFF3232	0.54	+1.1
3,287,121	+		GFF3232	0.58	-1.4
3,287,121	+		GFF3232	0.58	-0.0
3,287,121	-		GFF3232	0.58	-0.6
3,287,121	-		GFF3232	0.58	-1.2
3,287,129	+		GFF3232	0.62	+0.2
3,287,137	-		GFF3232	0.66	-0.0
3,287,139	+		GFF3232	0.67	-0.1
3,287,139	+		GFF3232	0.67	-1.0
3,287,140	+		GFF3232	0.67	-1.0
3,287,140	+		GFF3232	0.67	-1.4
3,287,141	+		GFF3232	0.68	+0.3
3,287,148	-		GFF3232	0.71	-0.8
3,287,148	-		GFF3232	0.71	-0.5
3,287,162	+		GFF3232	0.78	-0.0
3,287,162	+		GFF3232	0.78	-0.6
3,287,170	-		GFF3232	0.82	-1.0
3,287,199	+				-0.8
3,287,199	+				+0.3
3,287,199	+				-1.1
3,287,207	-				-0.2
3,287,217	-				-0.7
3,287,217	-				+0.8
3,287,234	+				-0.9
3,287,234	+				-0.3
3,287,235	+				-1.2
3,287,258	-				+0.2
3,287,271	-				-1.2
3,287,273	+				-0.5
3,287,273	+				+1.2
3,287,273	+				-1.5
3,287,273	+				-1.5
3,287,273	+				-0.8
3,287,275	-				+0.5
3,287,281	-				-2.2
3,287,322	-				+0.7
3,287,325	+				-1.3
3,287,330	-				-1.4
3,287,332	+				-0.9
3,287,332	+				-0.3
3,287,333	+				-0.3
3,287,333	+				-1.9
3,287,333	-				-1.4
3,287,341	-				-0.8
3,287,341	-				-1.7
3,287,346	+				-1.7
3,287,351	+				-0.6
3,287,351	+				+1.0
3,287,351	+				-0.5
3,287,359	-				-1.6
3,287,364	-				+0.1
3,287,369	+				+0.5
3,287,374	+				-0.8
3,287,429	+				+1.1
3,287,431	+				-0.3
3,287,437	+				-0.7
3,287,437	+				+1.3
3,287,437	+				-1.0
3,287,437	+				+0.6
3,287,437	+				+0.1
3,287,437	+				-0.6
3,287,437	+				-1.3
3,287,437	-				-0.7
3,287,437	-				-1.5
3,287,445	-				-1.4
3,287,445	-				+0.6
3,287,445	-				-0.7
3,287,456	-				-1.3
3,287,468	-				-0.6
3,287,470	+				+0.2
3,287,478	-				-1.3
3,287,478	-				+1.1
3,287,478	-				-0.3
3,287,478	-				-1.1
3,287,483	-				-0.3
3,287,483	-				-0.6
3,287,483	-				-0.6
3,287,510	+				-0.6
3,287,511	-				-0.4
3,287,518	-		GFF3233	0.15	+0.1
3,287,563	+		GFF3233	0.53	-1.7
3,287,568	+		GFF3233	0.57	+0.7
3,287,583	+		GFF3233	0.70	-0.5
3,287,599	-		GFF3233	0.84	-2.2
3,287,841	+				-0.2
3,287,849	-				-2.3
3,287,849	-				-1.1
3,287,857	+				-0.8
3,287,859	-				-1.8
3,287,876	+				-0.3
3,287,918	+				-0.3
3,287,926	-				-0.9
3,287,937	+				-1.3
3,287,945	+		GFF3234	0.11	+0.4
3,287,945	+		GFF3234	0.11	-2.5
3,287,945	+		GFF3234	0.11	-1.4
3,287,953	-		GFF3234	0.12	-0.8
3,287,953	-		GFF3234	0.12	-1.3
3,287,953	-		GFF3234	0.12	+0.5
3,287,953	-		GFF3234	0.12	-1.6
3,287,974	+		GFF3234	0.15	-1.3
3,287,982	-		GFF3234	0.16	-1.4
3,288,007	-		GFF3234	0.20	-0.3
3,288,014	+		GFF3234	0.21	+0.3
3,288,014	-		GFF3234	0.21	+0.5
3,288,017	+		GFF3234	0.22	-0.4
3,288,025	+		GFF3234	0.23	-0.9
3,288,025	-		GFF3234	0.23	-0.6
3,288,032	-		GFF3234	0.24	-0.7
3,288,032	-		GFF3234	0.24	-0.3
3,288,033	-		GFF3234	0.24	-0.3
3,288,058	-		GFF3234	0.28	-0.4
3,288,058	-		GFF3234	0.28	+1.1
3,288,059	+		GFF3234	0.28	+1.3
3,288,066	+		GFF3234	0.29	+0.7
3,288,081	+		GFF3234	0.31	-0.5
3,288,091	+		GFF3234	0.33	+0.7
3,288,093	+		GFF3234	0.33	-2.3
3,288,101	-		GFF3234	0.34	-1.9
3,288,111	-		GFF3234	0.36	+0.8
3,288,120	-		GFF3234	0.37	+0.1
3,288,122	+		GFF3234	0.37	-0.1
3,288,122	+		GFF3234	0.37	+0.6
3,288,122	+		GFF3234	0.37	-1.3
3,288,122	+		GFF3234	0.37	-0.9
3,288,130	-		GFF3234	0.38	+0.2
3,288,154	-		GFF3234	0.42	+0.7
3,288,164	-		GFF3234	0.43	-0.2
3,288,172	-		GFF3234	0.45	-0.9
3,288,174	+		GFF3234	0.45	+0.2
3,288,174	+		GFF3234	0.45	+0.1
3,288,174	+		GFF3234	0.45	-1.0
3,288,177	-		GFF3234	0.45	-0.6
3,288,179	+		GFF3234	0.46	-0.6
3,288,179	+		GFF3234	0.46	+1.1
3,288,179	+		GFF3234	0.46	+0.6
3,288,179	+		GFF3234	0.46	-0.9
3,288,179	+		GFF3234	0.46	-0.1
3,288,179	+		GFF3234	0.46	-1.2
3,288,179	+		GFF3234	0.46	-0.2
3,288,182	-		GFF3234	0.46	-0.4
3,288,182	-		GFF3234	0.46	-0.8
3,288,184	+		GFF3234	0.46	-1.6
3,288,184	+		GFF3234	0.46	+0.7
3,288,187	-		GFF3234	0.47	+0.2
3,288,187	-		GFF3234	0.47	-1.8
3,288,199	-		GFF3234	0.49	-0.9
3,288,201	+		GFF3234	0.49	+1.5
3,288,209	-		GFF3234	0.50	-0.3
3,288,209	-		GFF3234	0.50	+0.6
3,288,209	-		GFF3234	0.50	-0.2
3,288,218	+		GFF3234	0.51	-1.6
3,288,235	+		GFF3234	0.54	-0.6
3,288,235	+		GFF3234	0.54	-0.7
3,288,243	-		GFF3234	0.55	+0.2
3,288,250	-		GFF3234	0.56	-0.1
3,288,253	-		GFF3234	0.57	-0.9
3,288,289	+		GFF3234	0.62	+0.1
3,288,296	+		GFF3234	0.63	-1.0
3,288,303	+		GFF3234	0.64	-0.9
3,288,303	+		GFF3234	0.64	+0.0
3,288,303	+		GFF3234	0.64	+0.2
3,288,303	+		GFF3234	0.64	-0.4
3,288,303	+		GFF3234	0.64	-1.0
3,288,303	+		GFF3234	0.64	-0.8
3,288,304	-		GFF3234	0.64	-0.9
3,288,308	+		GFF3234	0.65	+0.6
3,288,308	+		GFF3234	0.65	-0.3
3,288,311	-		GFF3234	0.65	-0.1
3,288,311	-		GFF3234	0.65	+0.4
3,288,311	-		GFF3234	0.65	-3.0
3,288,311	-		GFF3234	0.65	-1.2
3,288,311	-		GFF3234	0.65	+0.3
3,288,311	-		GFF3234	0.65	+1.3
3,288,311	-		GFF3234	0.65	-0.8
3,288,311	-		GFF3234	0.65	-0.4
3,288,312	+		GFF3234	0.65	-1.0
3,288,313	+		GFF3234	0.65	-1.0
3,288,313	+		GFF3234	0.65	+0.6
3,288,313	+		GFF3234	0.65	-1.3
3,288,316	-		GFF3234	0.66	-0.6
3,288,316	-		GFF3234	0.66	+1.3
3,288,316	-		GFF3234	0.66	-1.2
3,288,321	-		GFF3234	0.67	+0.1
3,288,326	-		GFF3234	0.67	-0.5
3,288,360	+		GFF3234	0.72	+0.9
3,288,367	+		GFF3234	0.73	-0.3
3,288,367	+		GFF3234	0.73	-0.4
3,288,367	+		GFF3234	0.73	+0.1
3,288,367	+		GFF3234	0.73	+0.3
3,288,367	+		GFF3234	0.73	+1.1
3,288,367	+		GFF3234	0.73	-0.5
3,288,367	+		GFF3234	0.73	-1.3
3,288,371	+		GFF3234	0.74	-0.4
3,288,371	+		GFF3234	0.74	-0.8
3,288,372	+		GFF3234	0.74	-1.6
3,288,375	-		GFF3234	0.75	-0.3
3,288,375	-		GFF3234	0.75	+0.6
3,288,375	-		GFF3234	0.75	-0.5
3,288,375	-		GFF3234	0.75	+0.4
3,288,375	-		GFF3234	0.75	-1.8
3,288,375	-		GFF3234	0.75	+0.1
3,288,375	-		GFF3234	0.75	+0.4
3,288,379	-		GFF3234	0.75	-0.8
3,288,379	-		GFF3234	0.75	-1.2
3,288,379	-		GFF3234	0.75	-0.7
3,288,380	-		GFF3234	0.75	-1.3
3,288,380	-		GFF3234	0.75	-0.6
3,288,389	-		GFF3234	0.77	+1.0
3,288,406	+		GFF3234	0.79	-0.4
3,288,414	-		GFF3234	0.80	+0.4
3,288,426	+		GFF3234	0.82	-1.1
3,288,448	-		GFF3234	0.85	+0.2
3,288,462	+		GFF3234	0.88	-0.0
3,288,462	+		GFF3234	0.88	-0.5
3,288,462	+		GFF3234	0.88	+0.9
3,288,462	+		GFF3234	0.88	-0.3
3,288,463	+		GFF3234	0.88	+0.5
3,288,470	-		GFF3234	0.89	-1.4
3,288,471	-		GFF3234	0.89	-0.6
3,288,471	-		GFF3234	0.89	+0.4
3,288,471	-		GFF3234	0.89	+0.6
3,288,496	+				-0.9
3,288,496	+				+0.2
3,288,496	+				+0.6
3,288,504	-				-0.5
3,288,504	-				-1.2
3,288,504	-				-1.5
3,288,530	+				-1.3
3,288,552	+				-0.1
3,288,555	+				-0.9
3,288,555	-				+1.3
3,288,565	-				+1.3
3,288,573	-				+0.3
3,288,573	-				-0.3
3,288,578	+				-1.0
3,288,599	-				+0.7
3,288,645	-				-0.3
3,288,645	-				-0.9
3,288,660	+				+0.2
3,288,660	+				-0.0
3,288,668	-				+0.5
3,288,738	+				+0.3
3,288,753	+				+1.0
3,288,753	+				-1.8
3,288,753	+				-0.0
3,288,753	+				+0.1
3,288,753	+				+0.4
3,288,755	+				-1.8
3,288,755	+				-2.0
3,288,755	+				-0.3
3,288,760	+				+0.3
3,288,761	-				+1.1
3,288,761	-				+0.5
3,288,761	-				+0.7
3,288,761	-				-1.9
3,288,763	-				-0.7
3,288,765	+				-1.3
3,288,765	+				-0.8
3,288,768	-				-1.1
3,288,773	+				+1.1
3,288,773	-				+0.1
3,288,773	-				-1.1
3,288,817	+				+0.3
3,288,817	+				+0.1
3,288,817	+				+1.7
3,288,817	+				-0.9
3,288,825	-				-1.2
3,288,825	-				-0.4
3,288,825	-				+0.4
3,288,827	+				-0.3
3,288,829	-				-0.3
3,288,843	+				-1.1
3,288,850	+				+0.3
3,288,858	-				+0.6
3,288,861	-				-0.4
3,288,864	+				+0.7
3,288,866	+				-0.0
3,288,891	+				-0.9
3,288,891	+				+0.8
3,288,891	+				-0.8
3,288,920	+				-1.5
3,288,928	-				+0.1
3,288,935	+				+0.6
3,288,946	+				-0.6
3,288,954	-				+0.9
3,288,960	-				-1.6
3,289,004	+				-0.9
3,289,018	+				-1.3
3,289,018	+				+1.3
3,289,018	+				-1.3
3,289,018	+				+0.7
3,289,018	+				+1.7
3,289,023	+				-0.6
3,289,026	-				-0.8
3,289,031	-				-0.6
3,289,032	-		GFF3235	0.10	-1.9
3,289,036	+		GFF3235	0.10	-0.9
3,289,039	-		GFF3235	0.10	-1.3
3,289,041	+		GFF3235	0.10	+0.6
3,289,043	+		GFF3235	0.11	-0.0
3,289,067	+		GFF3235	0.12	+0.7
3,289,108	+		GFF3235	0.14	-1.6
3,289,125	-		GFF3235	0.14	-0.6
3,289,157	+		GFF3235	0.16	+0.4
3,289,165	-		GFF3235	0.16	-1.7
3,289,180	+		GFF3235	0.17	+1.4
3,289,180	+		GFF3235	0.17	+1.3
3,289,187	+		GFF3235	0.17	+0.1
3,289,188	-		GFF3235	0.17	-1.1
3,289,188	-		GFF3235	0.17	+1.0
3,289,188	-		GFF3235	0.17	+1.7
3,289,193	-		GFF3235	0.18	-0.4
3,289,206	+		GFF3235	0.18	+0.3
3,289,206	+		GFF3235	0.18	+0.9
3,289,206	+		GFF3235	0.18	-0.5
3,289,206	+		GFF3235	0.18	-1.3
3,289,214	-		GFF3235	0.19	+0.3
3,289,219	-		GFF3235	0.19	-1.1
3,289,219	-		GFF3235	0.19	-0.7
3,289,220	+		GFF3235	0.19	-1.0
3,289,228	+		GFF3235	0.19	-1.1
3,289,314	-		GFF3235	0.23	-1.5
3,289,316	-		GFF3235	0.23	-0.4
3,289,316	-		GFF3235	0.23	-1.3
3,289,316	-		GFF3235	0.23	-0.6
3,289,316	-		GFF3235	0.23	-0.6
3,289,327	-		GFF3235	0.24	-0.4
3,289,420	+		GFF3235	0.28	-0.7
3,289,442	+		GFF3235	0.29	-1.3
3,289,447	+		GFF3235	0.30	-0.7
3,289,447	+		GFF3235	0.30	-0.7
3,289,447	+		GFF3235	0.30	-1.1
3,289,447	+		GFF3235	0.30	+1.3
3,289,447	+		GFF3235	0.30	-1.4
3,289,447	+		GFF3235	0.30	+0.6
3,289,447	+		GFF3235	0.30	+0.2
3,289,455	-		GFF3235	0.30	-0.4
3,289,455	-		GFF3235	0.30	-0.3
3,289,455	-		GFF3235	0.30	+1.1
3,289,455	-		GFF3235	0.30	-1.2
3,289,455	-		GFF3235	0.30	-1.7
3,289,455	-		GFF3235	0.30	+0.6
3,289,466	+		GFF3235	0.31	-0.2
3,289,476	+		GFF3235	0.31	-0.4
3,289,489	+		GFF3235	0.32	-1.0
3,289,528	-		GFF3235	0.33	+0.2
3,289,541	+		GFF3235	0.34	+0.1