Strain Fitness in Sphingobium sp. HT1-2 around GFF3196

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,255,964	+		GFF3195	0.58	+1.0
3,256,006	-		GFF3195	0.60	-0.5
3,256,026	+		GFF3195	0.60	+0.8
3,256,026	-		GFF3195	0.60	-1.7
3,256,040	+		GFF3195	0.61	-0.3
3,256,045	+		GFF3195	0.61	-0.6
3,256,056	+		GFF3195	0.62	-0.5
3,256,064	-		GFF3195	0.62	-0.2
3,256,064	-		GFF3195	0.62	-0.3
3,256,069	+		GFF3195	0.62	+1.0
3,256,089	+		GFF3195	0.63	+0.6
3,256,097	-		GFF3195	0.64	-0.5
3,256,099	+		GFF3195	0.64	-1.8
3,256,107	-		GFF3195	0.64	-0.4
3,256,107	-		GFF3195	0.64	-0.4
3,256,107	-		GFF3195	0.64	-1.3
3,256,110	-		GFF3195	0.64	+0.9
3,256,118	-		GFF3195	0.65	-0.1
3,256,147	+		GFF3195	0.66	-1.7
3,256,157	+		GFF3195	0.66	-0.3
3,256,164	-		GFF3195	0.67	-1.0
3,256,167	+		GFF3195	0.67	-0.3
3,256,167	+		GFF3195	0.67	-1.7
3,256,170	-		GFF3195	0.67	+0.1
3,256,175	-		GFF3195	0.67	-1.1
3,256,181	+		GFF3195	0.67	+0.7
3,256,184	-		GFF3195	0.68	-2.3
3,256,192	+		GFF3195	0.68	-0.7
3,256,216	-		GFF3195	0.69	+0.7
3,256,255	-		GFF3195	0.71	-0.4
3,256,255	-		GFF3195	0.71	+0.6
3,256,257	+		GFF3195	0.71	-0.1
3,256,257	+		GFF3195	0.71	+0.1
3,256,257	+		GFF3195	0.71	+0.7
3,256,257	+		GFF3195	0.71	+0.5
3,256,257	+		GFF3195	0.71	+1.3
3,256,257	+		GFF3195	0.71	-1.0
3,256,257	+		GFF3195	0.71	-0.5
3,256,257	+		GFF3195	0.71	-2.4
3,256,257	+		GFF3195	0.71	-1.2
3,256,257	+		GFF3195	0.71	+0.6
3,256,257	+		GFF3195	0.71	+0.0
3,256,257	+		GFF3195	0.71	+0.4
3,256,257	+		GFF3195	0.71	-2.0
3,256,257	+		GFF3195	0.71	-0.3
3,256,257	+		GFF3195	0.71	-0.3
3,256,262	+		GFF3195	0.71	-1.0
3,256,262	+		GFF3195	0.71	-1.4
3,256,265	-		GFF3195	0.71	+0.0
3,256,265	-		GFF3195	0.71	-0.7
3,256,265	-		GFF3195	0.71	+0.1
3,256,265	-		GFF3195	0.71	-0.9
3,256,265	-		GFF3195	0.71	+2.1
3,256,265	-		GFF3195	0.71	-1.9
3,256,265	-		GFF3195	0.71	-1.5
3,256,265	-		GFF3195	0.71	+0.0
3,256,265	-		GFF3195	0.71	-1.4
3,256,265	-		GFF3195	0.71	+1.3
3,256,265	-		GFF3195	0.71	-0.4
3,256,265	-		GFF3195	0.71	-1.6
3,256,265	-		GFF3195	0.71	-0.4
3,256,265	-		GFF3195	0.71	-0.0
3,256,265	-		GFF3195	0.71	+0.6
3,256,265	-		GFF3195	0.71	+0.3
3,256,275	-		GFF3195	0.72	-1.2
3,256,318	+		GFF3195	0.74	-1.8
3,256,318	+		GFF3195	0.74	-0.8
3,256,320	-		GFF3195	0.74	+0.3
3,256,326	-		GFF3195	0.74	-0.1
3,256,326	-		GFF3195	0.74	-0.7
3,256,326	-		GFF3195	0.74	-0.3
3,256,397	+		GFF3195	0.77	-0.6
3,256,397	+		GFF3195	0.77	-0.9
3,256,397	+		GFF3195	0.77	+0.9
3,256,402	+		GFF3195	0.77	+0.6
3,256,402	+		GFF3195	0.77	-0.6
3,256,402	+		GFF3195	0.77	-1.2
3,256,402	+		GFF3195	0.77	+0.1
3,256,402	+		GFF3195	0.77	+0.1
3,256,402	+		GFF3195	0.77	-0.8
3,256,402	+		GFF3195	0.77	-0.8
3,256,402	+		GFF3195	0.77	+0.5
3,256,402	+		GFF3195	0.77	+2.2
3,256,402	+		GFF3195	0.77	+1.2
3,256,403	+		GFF3195	0.77	-0.3
3,256,404	+		GFF3195	0.78	-2.3
3,256,405	+		GFF3195	0.78	-0.6
3,256,405	-		GFF3195	0.78	-1.0
3,256,405	-		GFF3195	0.78	-0.1
3,256,405	-		GFF3195	0.78	+1.0
3,256,405	-		GFF3195	0.78	+0.4
3,256,405	-		GFF3195	0.78	-1.5
3,256,410	-		GFF3195	0.78	+0.2
3,256,410	-		GFF3195	0.78	-0.8
3,256,410	-		GFF3195	0.78	-0.4
3,256,420	-		GFF3195	0.78	-0.7
3,256,441	+		GFF3195	0.79	-1.5
3,256,441	+		GFF3195	0.79	-1.9
3,256,441	+		GFF3195	0.79	-1.1
3,256,441	+		GFF3195	0.79	-0.8
3,256,441	+		GFF3195	0.79	-1.0
3,256,449	-		GFF3195	0.80	-0.8
3,256,449	-		GFF3195	0.80	+0.6
3,256,454	+		GFF3195	0.80	+0.1
3,256,454	+		GFF3195	0.80	+0.5
3,256,462	-		GFF3195	0.80	-0.7
3,256,472	-		GFF3195	0.81	-0.7
3,256,490	-		GFF3195	0.81	-1.6
3,256,505	-		GFF3195	0.82	-0.5
3,256,505	-		GFF3195	0.82	-0.5
3,256,518	+		GFF3195	0.83	-1.6
3,256,520	+		GFF3195	0.83	-1.4
3,256,534	-		GFF3195	0.83	+0.3
3,256,559	-		GFF3195	0.85	-0.8
3,256,561	+		GFF3195	0.85	-1.1
3,256,561	+		GFF3195	0.85	-0.4
3,256,569	-		GFF3195	0.85	-0.9
3,256,575	+		GFF3195	0.85	+1.0
3,256,602	+		GFF3195	0.86	-0.4
3,256,602	+		GFF3195	0.86	-0.1
3,256,612	+		GFF3195	0.87	-0.1
3,256,612	+		GFF3195	0.87	+1.0
3,256,612	+		GFF3195	0.87	-0.2
3,256,612	+		GFF3195	0.87	+0.7
3,256,612	+		GFF3195	0.87	-0.7
3,256,615	-		GFF3195	0.87	-1.1
3,256,620	-		GFF3195	0.87	-1.9
3,256,620	-		GFF3195	0.87	-0.8
3,256,620	-		GFF3195	0.87	+0.7
3,256,620	-		GFF3195	0.87	-0.4
3,256,640	+		GFF3195	0.88	-1.3
3,256,662	-		GFF3195	0.89	-0.4
3,256,675	-		GFF3195	0.90	-1.1
3,256,685	-				+0.4
3,256,693	-				+1.4
3,256,709	+				+0.2
3,256,716	+				+0.4
3,256,716	+				-2.0
3,256,717	-				-1.2
3,256,724	-				+0.5
3,256,724	-				-2.2
3,256,774	-				+0.7
3,256,784	-				+0.3
3,256,838	+				+0.9
3,256,843	+				-0.5
3,256,845	+				+0.9
3,256,886	-				-1.6
3,256,898	-				-2.0
3,256,902	-				+0.1
3,256,911	+				-1.3
3,256,911	+				-0.8
3,256,911	+				-0.9
3,256,916	+				+0.1
3,256,919	-				-0.7
3,256,919	-				+1.3
3,256,921	+				+0.5
3,256,931	+				-0.6
3,256,945	-				+0.5
3,256,945	-				-3.1
3,256,949	+				-0.1
3,256,987	+				+1.5
3,257,000	-				-0.7
3,257,002	+				-0.4
3,257,002	+				-1.3
3,257,005	-				+0.3
3,257,007	+				-0.4
3,257,007	+				+1.5
3,257,010	-				-0.3
3,257,010	-				-1.5
3,257,012	+				-0.6
3,257,012	+				-1.2
3,257,012	+				-0.7
3,257,015	-				-0.8
3,257,015	-				+1.5
3,257,020	-				-0.4
3,257,023	+				+0.3
3,257,028	+		GFF3196	0.10	+0.9
3,257,028	+		GFF3196	0.10	+1.1
3,257,034	+		GFF3196	0.11	+0.2
3,257,034	+		GFF3196	0.11	-0.4
3,257,042	-		GFF3196	0.13	-0.3
3,257,042	-		GFF3196	0.13	+0.8
3,257,044	+		GFF3196	0.13	-1.0
3,257,052	-		GFF3196	0.14	+1.1
3,257,053	-		GFF3196	0.14	-0.5
3,257,089	-		GFF3196	0.20	+1.0
3,257,095	-		GFF3196	0.21	-1.3
3,257,099	+		GFF3196	0.22	+0.2
3,257,107	-		GFF3196	0.23	+0.3
3,257,107	-		GFF3196	0.23	+0.7
3,257,137	+		GFF3196	0.28	+1.1
3,257,179	+		GFF3196	0.35	-0.3
3,257,179	+		GFF3196	0.35	-0.7
3,257,186	+		GFF3196	0.36	+2.6
3,257,187	-		GFF3196	0.36	-0.4
3,257,204	+		GFF3196	0.39	-1.0
3,257,235	-		GFF3196	0.44	-0.3
3,257,240	+		GFF3196	0.44	+0.5
3,257,245	+		GFF3196	0.45	+1.5
3,257,248	-		GFF3196	0.46	+0.5
3,257,260	+		GFF3196	0.48	-0.3
3,257,280	+		GFF3196	0.51	+0.4
3,257,288	-		GFF3196	0.52	-1.0
3,257,325	+		GFF3196	0.58	-1.3
3,257,333	-		GFF3196	0.59	+0.6
3,257,338	-		GFF3196	0.60	-2.9
3,257,348	-		GFF3196	0.62	+1.0
3,257,358	+		GFF3196	0.63	-1.5
3,257,359	-		GFF3196	0.64	-1.0
3,257,366	-		GFF3196	0.65	-0.7
3,257,366	-		GFF3196	0.65	+0.3
3,257,377	+		GFF3196	0.67	-1.1
3,257,377	+		GFF3196	0.67	+2.1
3,257,377	+		GFF3196	0.67	-0.2
3,257,384	+		GFF3196	0.68	-0.7
3,257,389	+		GFF3196	0.68	-0.7
3,257,389	+		GFF3196	0.68	-1.1
3,257,392	-		GFF3196	0.69	+1.0
3,257,392	-		GFF3196	0.69	+0.4
3,257,397	-		GFF3196	0.70	+0.3
3,257,411	-		GFF3196	0.72	+0.2
3,257,468	+		GFF3196	0.81	-0.7
3,257,468	+		GFF3196	0.81	+0.9
3,257,468	+		GFF3196	0.81	+0.5
3,257,476	-		GFF3196	0.82	-0.4
3,257,476	-		GFF3196	0.82	+0.5
3,257,509	-		GFF3196	0.88	+0.0
3,257,513	+		GFF3196	0.88	-1.3
3,257,521	-		GFF3196	0.90	+1.5
3,257,528	+				-1.6
3,257,541	-				-1.1
3,257,551	+				+0.7
3,257,551	+				-1.4
3,257,551	+				+0.2
3,257,551	+				-0.3
3,257,559	-				+0.5
3,257,559	-				+0.3
3,257,559	-				-0.9
3,257,563	-				-0.5
3,257,573	+				+0.2
3,257,578	+				-0.8
3,257,583	+				-0.4
3,257,584	+				-0.7
3,257,584	+				-0.9
3,257,584	+				-0.1
3,257,584	+				-2.2
3,257,592	-				+0.6
3,257,592	-				-0.5
3,257,592	-				+1.2
3,257,592	-				-0.8
3,257,594	-				-0.3
3,257,601	+				-0.1
3,257,601	+				-0.3
3,257,601	+				-0.1
3,257,606	+				-0.6
3,257,609	-				-1.3
3,257,609	-				-0.4
3,257,609	-				-0.4
3,257,609	-				+0.8
3,257,619	-				-0.7
3,257,623	+				-0.4
3,257,655	+				+1.1
3,257,656	+				+0.0
3,257,662	-				-0.3
3,257,716	-				+0.5
3,257,731	-		GFF3197	0.11	+0.8
3,257,733	+		GFF3197	0.12	-1.1
3,257,736	+		GFF3197	0.12	+0.6
3,257,786	+		GFF3197	0.20	-1.6
3,257,805	+		GFF3197	0.24	-0.6
3,257,852	-		GFF3197	0.31	-0.5
3,257,857	-		GFF3197	0.32	-0.4
3,257,859	+		GFF3197	0.33	+0.4
3,257,859	+		GFF3197	0.33	-1.1
3,257,859	+		GFF3197	0.33	+1.3
3,257,859	+		GFF3197	0.33	+1.3
3,257,859	+		GFF3197	0.33	-0.2
3,257,864	-		GFF3197	0.33	-0.7
3,257,867	-		GFF3197	0.34	-0.6
3,257,867	-		GFF3197	0.34	+0.5
3,257,894	+		GFF3197	0.38	+0.4
3,257,894	+		GFF3197	0.38	-0.2
3,257,902	-		GFF3197	0.40	-1.4
3,257,902	-		GFF3197	0.40	-0.5
3,257,918	+		GFF3197	0.42	+0.0
3,257,925	-		GFF3197	0.43	-0.9
3,257,928	+		GFF3197	0.44	-1.0
3,257,936	-		GFF3197	0.45	+1.5
3,257,963	-		GFF3197	0.50	-0.2
3,257,970	+		GFF3197	0.51	-1.2
3,258,016	-		GFF3197	0.59	-1.3
3,258,024	-		GFF3197	0.60	-0.3
3,258,047	-		GFF3197	0.64	-0.3
3,258,064	+		GFF3197	0.67	+1.3
3,258,076	-		GFF3197	0.68	-0.4
3,258,109	+		GFF3197	0.74	+0.9
3,258,117	-		GFF3197	0.75	+0.1
3,258,128	-		GFF3197	0.77	-0.6
3,258,133	+		GFF3197	0.78	-0.3
3,258,133	-		GFF3197	0.78	+0.2
3,258,133	-		GFF3197	0.78	-0.7
3,258,141	+		GFF3197	0.79	-0.3
3,258,154	+		GFF3197	0.81	+0.2
3,258,167	-		GFF3197	0.84	-0.1
3,258,194	-		GFF3197	0.88	-1.4
3,258,198	-		GFF3197	0.89	-0.6
3,258,212	+				-0.3
3,258,220	-				+0.1
3,258,220	-				+1.1
3,258,223	-				-1.8
3,258,244	+				-0.3
3,258,258	+				-1.4
3,258,260	+				-0.7
3,258,266	-				-0.3
3,258,268	-				-0.2
3,258,270	-				+0.8
3,258,272	+				-1.1
3,258,272	+				-0.7
3,258,290	+				-1.2
3,258,290	+				-0.3
3,258,290	+				-0.4
3,258,298	-				+0.7
3,258,298	-				-0.8
3,258,308	+				-1.2
3,258,308	+				+1.6
3,258,311	-				+1.1
3,258,316	-				+0.5
3,258,316	-				-1.1
3,258,316	-				-0.9
3,258,316	-				+0.7
3,258,316	-				-0.4
3,258,316	-				+0.9
3,258,316	-				-2.0
3,258,316	-				-0.3
3,258,316	-				-0.4
3,258,321	-				+1.2
3,258,356	+				-1.3
3,258,361	+				-0.6
3,258,376	-				+0.4
3,258,380	+				+0.7
3,258,390	-				+0.9
3,258,390	-				+0.2
3,258,408	+				+0.0
3,258,420	-				-1.1
3,258,451	-		GFF3198	0.10	-1.5
3,258,499	+		GFF3198	0.13	-0.8
3,258,499	+		GFF3198	0.13	-0.7
3,258,507	-		GFF3198	0.14	+0.6
3,258,507	-		GFF3198	0.14	-0.3
3,258,507	-		GFF3198	0.14	-1.2
3,258,507	-		GFF3198	0.14	-0.3
3,258,547	+		GFF3198	0.16	-0.7
3,258,547	+		GFF3198	0.16	+0.3
3,258,550	-		GFF3198	0.16	-0.3
3,258,555	-		GFF3198	0.16	+0.2
3,258,555	-		GFF3198	0.16	-1.2