Strain Fitness in Sphingobium sp. HT1-2 around GFF3054

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,128,966	+				-0.8
3,128,974	-				-0.8
3,128,974	-				-1.8
3,128,974	-				-1.6
3,128,981	+				-0.2
3,128,981	+				-1.7
3,128,981	+				+0.7
3,128,981	+				-0.7
3,128,989	-				-1.3
3,129,018	+				+0.1
3,129,018	+				-1.1
3,129,026	-				-0.9
3,129,026	-				-0.8
3,129,026	-				-1.7
3,129,054	-		GFF3053	0.12	+0.6
3,129,069	-		GFF3053	0.15	+0.2
3,129,069	-		GFF3053	0.15	+2.2
3,129,105	-		GFF3053	0.21	+1.4
3,129,118	-		GFF3053	0.23	-1.3
3,129,118	-		GFF3053	0.23	-0.7
3,129,141	+		GFF3053	0.27	-0.4
3,129,145	+		GFF3053	0.28	-1.2
3,129,145	+		GFF3053	0.28	-1.7
3,129,157	+		GFF3053	0.30	-0.8
3,129,159	+		GFF3053	0.31	+0.5
3,129,165	+		GFF3053	0.32	+0.4
3,129,165	+		GFF3053	0.32	-1.6
3,129,165	+		GFF3053	0.32	+1.2
3,129,165	+		GFF3053	0.32	+1.6
3,129,167	-		GFF3053	0.32	-1.8
3,129,173	-		GFF3053	0.33	+1.3
3,129,173	-		GFF3053	0.33	-1.0
3,129,186	+		GFF3053	0.35	-1.7
3,129,199	-		GFF3053	0.38	+0.6
3,129,201	-		GFF3053	0.38	-1.6
3,129,262	+		GFF3053	0.49	-1.4
3,129,270	-		GFF3053	0.50	-0.2
3,129,270	-		GFF3053	0.50	-0.8
3,129,270	-		GFF3053	0.50	+0.1
3,129,272	+		GFF3053	0.50	+0.6
3,129,272	+		GFF3053	0.50	-0.5
3,129,272	+		GFF3053	0.50	+0.3
3,129,280	-		GFF3053	0.52	-1.2
3,129,280	-		GFF3053	0.52	+0.1
3,129,280	-		GFF3053	0.52	-0.7
3,129,350	-		GFF3053	0.64	+0.0
3,129,397	-		GFF3053	0.72	-0.5
3,129,434	-		GFF3053	0.79	-0.8
3,129,450	+		GFF3053	0.81	-1.7
3,129,450	+		GFF3053	0.81	-0.4
3,129,450	+		GFF3053	0.81	-1.4
3,129,450	+		GFF3053	0.81	+0.8
3,129,450	+		GFF3053	0.81	-1.2
3,129,458	-		GFF3053	0.83	-1.4
3,129,458	-		GFF3053	0.83	-0.2
3,129,460	+		GFF3053	0.83	-0.4
3,129,469	+		GFF3053	0.85	-0.5
3,129,473	-		GFF3053	0.85	+0.6
3,129,500	+				+0.6
3,129,500	+				-0.8
3,129,508	-				-1.0
3,129,510	-				-0.2
3,129,598	+		GFF3054	0.13	-0.2
3,129,600	+		GFF3054	0.13	-1.3
3,129,613	+		GFF3054	0.17	+0.3
3,129,624	-		GFF3054	0.20	-1.7
3,129,624	-		GFF3054	0.20	-1.5
3,129,653	+		GFF3054	0.28	+0.1
3,129,661	-		GFF3054	0.30	-0.5
3,129,661	-		GFF3054	0.30	-0.6
3,129,661	-		GFF3054	0.30	+1.9
3,129,663	+		GFF3054	0.31	-1.4
3,129,667	+		GFF3054	0.32	-1.6
3,129,667	+		GFF3054	0.32	+1.8
3,129,686	+		GFF3054	0.37	-0.8
3,129,689	-		GFF3054	0.38	-1.6
3,129,699	-		GFF3054	0.41	-1.5
3,129,699	-		GFF3054	0.41	+1.5
3,129,700	-		GFF3054	0.41	-1.8
3,129,704	-		GFF3054	0.42	-1.0
3,129,707	-		GFF3054	0.43	+1.0
3,129,707	-		GFF3054	0.43	-1.4
3,129,713	+		GFF3054	0.45	-0.5
3,129,726	-		GFF3054	0.48	-1.6
3,129,737	+		GFF3054	0.52	+1.4
3,129,745	-		GFF3054	0.54	-0.8
3,129,769	+		GFF3054	0.61	-0.7
3,129,769	+		GFF3054	0.61	+0.2
3,129,769	+		GFF3054	0.61	+0.2
3,129,769	+		GFF3054	0.61	+0.1
3,129,769	+		GFF3054	0.61	+1.8
3,129,769	+		GFF3054	0.61	-0.8
3,129,777	-		GFF3054	0.63	-0.1
3,129,777	-		GFF3054	0.63	-0.2
3,129,777	-		GFF3054	0.63	-0.8
3,129,777	-		GFF3054	0.63	-0.2
3,129,777	-		GFF3054	0.63	-0.5
3,129,799	+		GFF3054	0.69	-0.2
3,129,820	-		GFF3054	0.75	-2.1
3,129,827	-		GFF3054	0.77	+0.3
3,129,835	-		GFF3054	0.79	-2.0
3,129,863	+		GFF3054	0.87	+1.8
3,129,876	+				+0.2
3,129,876	-				+0.8
3,129,884	-				-1.2
3,129,913	+				-1.8
3,129,921	-				-0.0
3,129,921	-				-0.9
3,129,996	-				-1.9
3,129,996	-				-0.4
3,130,011	+				+1.2
3,130,019	-				+1.8
3,130,019	-				-0.1
3,130,022	+				+0.3
3,130,025	-				-0.5
3,130,025	-				-1.9
3,130,040	-				-0.0
3,130,046	+				-0.2
3,130,046	-				-0.2
3,130,084	+				-1.6
3,130,084	+				-1.0
3,130,092	-				-0.1
3,130,130	+		GFF3055	0.12	+0.8
3,130,150	+		GFF3055	0.14	-0.4
3,130,155	+		GFF3055	0.14	+0.3
3,130,157	+		GFF3055	0.14	-1.2
3,130,157	+		GFF3055	0.14	-0.4
3,130,164	+		GFF3055	0.15	+0.1
3,130,165	-		GFF3055	0.15	-1.6
3,130,165	-		GFF3055	0.15	-0.0
3,130,165	-		GFF3055	0.15	-0.8
3,130,188	+		GFF3055	0.17	+0.3
3,130,196	-		GFF3055	0.17	-0.7
3,130,213	+		GFF3055	0.18	-0.4
3,130,218	+		GFF3055	0.19	-0.4
3,130,221	-		GFF3055	0.19	+0.1
3,130,221	-		GFF3055	0.19	+1.4
3,130,228	+		GFF3055	0.19	+0.4
3,130,236	+		GFF3055	0.20	-1.2
3,130,246	+		GFF3055	0.21	+0.1
3,130,261	-		GFF3055	0.22	-0.2
3,130,269	+		GFF3055	0.22	+0.8
3,130,287	-		GFF3055	0.24	-0.6
3,130,305	+		GFF3055	0.25	-1.1
3,130,315	+		GFF3055	0.26	-1.4
3,130,324	-		GFF3055	0.26	+1.9
3,130,351	+		GFF3055	0.28	-0.2
3,130,356	+		GFF3055	0.29	+0.0
3,130,356	+		GFF3055	0.29	+0.2
3,130,356	+		GFF3055	0.29	-0.2
3,130,361	+		GFF3055	0.29	-0.2
3,130,361	+		GFF3055	0.29	-2.3
3,130,364	-		GFF3055	0.29	+0.7
3,130,364	-		GFF3055	0.29	-1.7
3,130,364	-		GFF3055	0.29	-0.3
3,130,364	-		GFF3055	0.29	+1.5
3,130,364	-		GFF3055	0.29	-1.7
3,130,367	+		GFF3055	0.30	-1.2
3,130,367	+		GFF3055	0.30	-0.9
3,130,367	+		GFF3055	0.30	-0.9
3,130,369	-		GFF3055	0.30	-0.4
3,130,369	-		GFF3055	0.30	-0.2
3,130,370	-		GFF3055	0.30	+1.1
3,130,377	+		GFF3055	0.30	-2.1
3,130,410	+		GFF3055	0.33	-0.8
3,130,410	+		GFF3055	0.33	-0.2
3,130,410	+		GFF3055	0.33	+1.9
3,130,410	+		GFF3055	0.33	-0.4
3,130,410	+		GFF3055	0.33	-0.5
3,130,410	+		GFF3055	0.33	-0.5
3,130,415	+		GFF3055	0.33	-0.2
3,130,415	+		GFF3055	0.33	+0.7
3,130,418	-		GFF3055	0.33	-0.5
3,130,418	-		GFF3055	0.33	+0.5
3,130,418	-		GFF3055	0.33	-0.8
3,130,418	-		GFF3055	0.33	-2.2
3,130,425	+		GFF3055	0.34	-0.3
3,130,433	-		GFF3055	0.34	-0.4
3,130,433	-		GFF3055	0.34	+0.5
3,130,435	-		GFF3055	0.34	-0.6
3,130,437	+		GFF3055	0.35	-0.5
3,130,437	+		GFF3055	0.35	+0.0
3,130,445	-		GFF3055	0.35	+0.4
3,130,449	+		GFF3055	0.35	-1.5
3,130,452	+		GFF3055	0.36	-0.1
3,130,469	+		GFF3055	0.37	-0.8
3,130,469	+		GFF3055	0.37	-1.3
3,130,469	+		GFF3055	0.37	-2.0
3,130,477	-		GFF3055	0.37	+1.1
3,130,477	-		GFF3055	0.37	+0.4
3,130,477	-		GFF3055	0.37	+1.3
3,130,493	-		GFF3055	0.39	+0.2
3,130,515	+		GFF3055	0.40	-0.7
3,130,516	+		GFF3055	0.40	-0.7
3,130,564	+		GFF3055	0.44	-0.4
3,130,570	-		GFF3055	0.44	-0.9
3,130,603	+		GFF3055	0.47	-1.5
3,130,618	+		GFF3055	0.48	-1.6
3,130,618	+		GFF3055	0.48	-0.2
3,130,626	-		GFF3055	0.48	-0.9
3,130,626	-		GFF3055	0.48	-1.5
3,130,626	-		GFF3055	0.48	+1.1
3,130,626	-		GFF3055	0.48	-1.2
3,130,626	-		GFF3055	0.48	-1.4
3,130,626	-		GFF3055	0.48	-0.1
3,130,629	+		GFF3055	0.48	+0.8
3,130,630	+		GFF3055	0.48	-1.1
3,130,637	-		GFF3055	0.49	-0.9
3,130,638	-		GFF3055	0.49	-1.8
3,130,640	+		GFF3055	0.49	+0.3
3,130,648	-		GFF3055	0.50	+0.4
3,130,682	-		GFF3055	0.52	-1.4
3,130,692	-		GFF3055	0.53	+0.7
3,130,705	+		GFF3055	0.54	+0.3
3,130,707	+		GFF3055	0.54	-1.3
3,130,725	-		GFF3055	0.55	-1.2
3,130,738	-		GFF3055	0.56	+0.5
3,130,744	+		GFF3055	0.57	-1.4
3,130,749	+		GFF3055	0.57	-0.1
3,130,766	+		GFF3055	0.58	-0.7
3,130,776	+		GFF3055	0.59	-1.6
3,130,776	+		GFF3055	0.59	+0.4
3,130,776	+		GFF3055	0.59	+0.2
3,130,784	-		GFF3055	0.60	-1.4
3,130,800	+		GFF3055	0.61	+0.9
3,130,801	+		GFF3055	0.61	-1.1
3,130,813	+		GFF3055	0.62	-1.2
3,130,856	+		GFF3055	0.65	+0.3
3,130,859	+		GFF3055	0.65	+1.3
3,130,861	+		GFF3055	0.65	-0.7
3,130,905	-		GFF3055	0.68	-0.6