Strain Fitness in Sphingobium sp. HT1-2 around GFF2982

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
3,034,910	-		GFF2979	0.40	-2.2
3,034,928	+		GFF2979	0.43	+0.6
3,034,928	+		GFF2979	0.43	-0.4
3,034,936	-		GFF2979	0.44	+0.5
3,034,951	+		GFF2979	0.47	-0.1
3,034,952	-		GFF2979	0.47	-1.3
3,034,953	+		GFF2979	0.47	-0.5
3,034,959	-		GFF2979	0.48	-0.6
3,034,959	-		GFF2979	0.48	-0.6
3,034,972	+		GFF2979	0.50	+0.4
3,034,997	+		GFF2979	0.54	-0.9
3,034,997	+		GFF2979	0.54	-1.0
3,034,997	+		GFF2979	0.54	+1.1
3,035,004	+		GFF2979	0.56	-2.0
3,035,005	-		GFF2979	0.56	+0.5
3,035,005	-		GFF2979	0.56	-0.7
3,035,005	-		GFF2979	0.56	-2.2
3,035,005	-		GFF2979	0.56	-1.8
3,035,005	-		GFF2979	0.56	-0.6
3,035,021	+		GFF2979	0.58	+0.4
3,035,026	+		GFF2979	0.59	-2.1
3,035,026	+		GFF2979	0.59	-0.4
3,035,026	+		GFF2979	0.59	+0.2
3,035,026	+		GFF2979	0.59	+1.3
3,035,029	-		GFF2979	0.60	-0.3
3,035,031	+		GFF2979	0.60	-0.6
3,035,034	-		GFF2979	0.61	-0.8
3,035,034	-		GFF2979	0.61	-0.9
3,035,054	+		GFF2979	0.64	-0.4
3,035,054	+		GFF2979	0.64	-0.2
3,035,054	+		GFF2979	0.64	-0.1
3,035,062	-		GFF2979	0.65	-0.0
3,035,062	-		GFF2979	0.65	-0.2
3,035,072	+		GFF2979	0.67	-1.7
3,035,072	+		GFF2979	0.67	+1.1
3,035,077	+		GFF2979	0.68	+0.2
3,035,082	+		GFF2979	0.69	-0.3
3,035,090	+		GFF2979	0.70	+0.1
3,035,090	-		GFF2979	0.70	-0.9
3,035,098	-		GFF2979	0.71	+0.0
3,035,104	+		GFF2979	0.72	+0.6
3,035,104	+		GFF2979	0.72	-0.8
3,035,112	-		GFF2979	0.74	-1.3
3,035,112	-		GFF2979	0.74	-0.5
3,035,126	-		GFF2979	0.76	-1.1
3,035,146	+		GFF2979	0.79	-0.5
3,035,146	+		GFF2979	0.79	-1.1
3,035,146	+		GFF2979	0.79	-1.5
3,035,146	+		GFF2979	0.79	-0.1
3,035,146	+		GFF2979	0.79	-0.9
3,035,146	+		GFF2979	0.79	+0.2
3,035,146	+		GFF2979	0.79	+0.1
3,035,151	+		GFF2979	0.80	-1.7
3,035,154	-		GFF2979	0.81	-1.9
3,035,154	-		GFF2979	0.81	-0.6
3,035,154	-		GFF2979	0.81	-0.7
3,035,154	-		GFF2979	0.81	-1.3
3,035,174	+		GFF2979	0.84	-0.6
3,035,178	-		GFF2979	0.85	-0.3
3,035,187	+		GFF2979	0.86	-0.5
3,035,204	-		GFF2979	0.89	-1.2
3,035,214	-				-0.8
3,035,246	+				+1.6
3,035,255	+				-0.8
3,035,263	-				-0.2
3,035,263	-				-0.9
3,035,274	-				+0.5
3,035,277	+				-1.1
3,035,285	-				+0.2
3,035,309	-				-0.8
3,035,339	-				-2.1
3,035,384	+				+0.6
3,035,400	+				-0.5
3,035,402	-				+0.8
3,035,402	-				-0.9
3,035,404	+				-0.2
3,035,411	-		GFF2980	0.12	-0.4
3,035,444	+		GFF2980	0.32	-1.1
3,035,452	-		GFF2980	0.36	+1.2
3,035,472	-		GFF2980	0.48	+0.6
3,035,472	-		GFF2980	0.48	+0.2
3,035,488	-		GFF2980	0.58	-1.6
3,035,489	+		GFF2980	0.58	-1.6
3,035,498	-		GFF2980	0.64	-1.1
3,035,502	-		GFF2980	0.66	+0.3
3,035,502	-		GFF2980	0.66	+0.9
3,035,504	+		GFF2980	0.67	-0.5
3,035,533	+		GFF2980	0.85	+0.4
3,035,534	-		GFF2980	0.85	-0.6
3,035,541	-		GFF2980	0.89	-0.4
3,035,543	+				+1.4
3,035,547	-				+1.5
3,035,553	+				+1.5
3,035,621	+				-1.4
3,035,626	+				+0.1
3,035,626	+				-1.4
3,035,634	-				-0.1
3,035,665	-		GFF2981	0.15	-0.0
3,035,699	-		GFF2981	0.28	+0.6
3,035,707	-		GFF2981	0.31	-1.2
3,035,712	-		GFF2981	0.33	+0.8
3,035,731	-		GFF2981	0.40	+1.0
3,035,734	+		GFF2981	0.41	+0.4
3,035,770	-		GFF2981	0.55	+1.2
3,035,786	+		GFF2981	0.61	-0.4
3,035,786	+		GFF2981	0.61	-0.7
3,035,788	-		GFF2981	0.62	-0.4
3,035,792	+		GFF2981	0.64	+0.2
3,035,792	+		GFF2981	0.64	+1.3
3,035,798	+		GFF2981	0.66	-1.2
3,035,820	-		GFF2981	0.74	-1.2
3,035,833	-		GFF2981	0.79	-1.1
3,035,833	-		GFF2981	0.79	+0.7
3,035,839	-		GFF2981	0.82	-0.6
3,035,851	+		GFF2981	0.86	-1.8
3,035,853	+		GFF2981	0.87	-2.3
3,035,863	+				+0.8
3,035,863	+				-0.5
3,035,869	-				-0.5
3,035,871	+				-0.9
3,035,871	-				-1.2
3,035,871	-				-0.1
3,035,871	-				-2.0
3,035,879	-				-0.2
3,035,879	-				-1.4
3,035,881	+				-1.0
3,035,891	+				-1.5
3,035,893	-				-1.1
3,035,896	+				+0.3
3,035,896	+				+0.5
3,035,903	+				-1.0
3,035,903	+				-2.5
3,035,904	-				-1.7
3,035,904	-				+0.6
3,035,910	+		GFF2982	0.12	+1.2
3,035,915	+		GFF2982	0.18	+0.1
3,035,918	-		GFF2982	0.21	-1.2
3,035,923	-		GFF2982	0.27	-0.9
3,035,946	+		GFF2982	0.52	-0.4
3,035,973	+		GFF2982	0.82	-1.3
3,035,982	+				+1.2
3,035,990	-				-1.2
3,035,990	-				+0.1
3,035,997	+				-1.7
3,036,005	-				+0.4
3,036,005	-				-0.4
3,036,005	-				-0.9
3,036,007	+				-0.9
3,036,063	+				-1.1
3,036,071	-				+1.0
3,036,078	-				+0.1
3,036,079	-				-0.5
3,036,086	+				-0.5
3,036,094	-				+0.1
3,036,094	-				+0.2
3,036,119	-				+0.8
3,036,130	-				-0.6
3,036,131	-				+1.2
3,036,131	-				+0.2
3,036,136	+				-0.4
3,036,137	+				-1.1
3,036,144	+				-2.0
3,036,144	+				+0.2
3,036,152	-				-1.8
3,036,152	-				-2.8
3,036,156	+				-0.1
3,036,164	-				-0.5
3,036,164	-				+0.2
3,036,178	+		GFF2983	0.10	+0.2
3,036,178	+		GFF2983	0.10	-1.3
3,036,178	+		GFF2983	0.10	-1.8
3,036,178	+		GFF2983	0.10	+1.0
3,036,178	+		GFF2983	0.10	-0.5
3,036,183	+		GFF2983	0.11	-1.2
3,036,185	+		GFF2983	0.11	-1.6
3,036,186	-		GFF2983	0.11	+0.1
3,036,186	-		GFF2983	0.11	-1.5
3,036,186	-		GFF2983	0.11	-1.3
3,036,186	-		GFF2983	0.11	+0.3
3,036,202	+		GFF2983	0.12	+0.1
3,036,205	-		GFF2983	0.12	-0.7
3,036,210	-		GFF2983	0.12	+0.9
3,036,210	-		GFF2983	0.12	-0.9
3,036,216	+		GFF2983	0.13	-0.4
3,036,224	-		GFF2983	0.13	-1.4
3,036,234	+		GFF2983	0.14	-1.2
3,036,234	-		GFF2983	0.14	+0.2
3,036,242	-		GFF2983	0.14	+0.4
3,036,243	-		GFF2983	0.14	+0.6
3,036,245	+		GFF2983	0.14	-0.9
3,036,245	+		GFF2983	0.14	-1.6
3,036,250	+		GFF2983	0.15	-0.8
3,036,253	-		GFF2983	0.15	+1.1
3,036,253	-		GFF2983	0.15	-1.6
3,036,257	+		GFF2983	0.15	-0.7
3,036,259	+		GFF2983	0.15	+0.8
3,036,283	+		GFF2983	0.17	+1.1
3,036,283	+		GFF2983	0.17	-0.4
3,036,283	+		GFF2983	0.17	+0.2
3,036,283	+		GFF2983	0.17	-1.6
3,036,283	+		GFF2983	0.17	-0.5
3,036,283	+		GFF2983	0.17	-0.8
3,036,284	-		GFF2983	0.17	-1.3
3,036,289	-		GFF2983	0.17	-0.6
3,036,291	-		GFF2983	0.17	+0.3
3,036,291	-		GFF2983	0.17	+0.2
3,036,291	-		GFF2983	0.17	+0.6
3,036,291	-		GFF2983	0.17	-0.6
3,036,291	-		GFF2983	0.17	-0.7
3,036,291	-		GFF2983	0.17	-1.6
3,036,291	-		GFF2983	0.17	-0.5
3,036,291	-		GFF2983	0.17	+0.0
3,036,317	+		GFF2983	0.19	-1.0
3,036,356	-		GFF2983	0.21	+0.2
3,036,373	-		GFF2983	0.22	+0.3
3,036,382	+		GFF2983	0.22	-0.4
3,036,383	+		GFF2983	0.22	-0.4
3,036,383	+		GFF2983	0.22	+0.2
3,036,383	+		GFF2983	0.22	-0.8
3,036,391	-		GFF2983	0.23	-1.2
3,036,395	+		GFF2983	0.23	-0.4
3,036,402	-		GFF2983	0.24	-0.6
3,036,405	+		GFF2983	0.24	-1.5
3,036,410	+		GFF2983	0.24	-0.5
3,036,443	+		GFF2983	0.26	+0.4
3,036,448	+		GFF2983	0.26	-0.5
3,036,448	+		GFF2983	0.26	-0.8
3,036,448	+		GFF2983	0.26	-1.2
3,036,448	+		GFF2983	0.26	-0.8
3,036,448	+		GFF2983	0.26	+0.7
3,036,448	+		GFF2983	0.26	-1.7
3,036,448	+		GFF2983	0.26	-0.8
3,036,448	+		GFF2983	0.26	+0.4
3,036,448	+		GFF2983	0.26	+0.1
3,036,451	-		GFF2983	0.26	+0.8
3,036,451	-		GFF2983	0.26	-0.5
3,036,451	-		GFF2983	0.26	+1.1
3,036,451	-		GFF2983	0.26	-0.8
3,036,456	-		GFF2983	0.27	-0.0
3,036,456	-		GFF2983	0.27	-0.8
3,036,456	-		GFF2983	0.27	-0.7
3,036,456	-		GFF2983	0.27	-1.5
3,036,456	-		GFF2983	0.27	-0.9
3,036,456	-		GFF2983	0.27	-0.3
3,036,456	-		GFF2983	0.27	+0.2
3,036,456	-		GFF2983	0.27	-0.1
3,036,456	-		GFF2983	0.27	-0.3
3,036,456	-		GFF2983	0.27	+0.5
3,036,460	+		GFF2983	0.27	-0.6
3,036,465	+		GFF2983	0.27	+0.8
3,036,473	+		GFF2983	0.28	-0.9
3,036,478	+		GFF2983	0.28	-0.8
3,036,478	+		GFF2983	0.28	+0.8
3,036,483	+		GFF2983	0.28	-0.5
3,036,483	+		GFF2983	0.28	-1.1
3,036,483	+		GFF2983	0.28	-1.3
3,036,483	+		GFF2983	0.28	-0.8
3,036,488	+		GFF2983	0.29	-0.4
3,036,488	+		GFF2983	0.29	-1.6
3,036,491	-		GFF2983	0.29	-0.6
3,036,496	-		GFF2983	0.29	-1.1
3,036,496	-		GFF2983	0.29	-0.6
3,036,496	-		GFF2983	0.29	-1.0
3,036,525	-		GFF2983	0.31	-0.5
3,036,539	+		GFF2983	0.32	-1.9
3,036,560	-		GFF2983	0.33	-0.4
3,036,561	+		GFF2983	0.33	-1.9
3,036,562	+		GFF2983	0.33	-1.6
3,036,563	+		GFF2983	0.33	-0.5
3,036,563	+		GFF2983	0.33	-0.2
3,036,563	+		GFF2983	0.33	+0.4
3,036,563	+		GFF2983	0.33	-0.9
3,036,570	-		GFF2983	0.33	+0.6
3,036,573	+		GFF2983	0.34	-1.3
3,036,573	+		GFF2983	0.34	-1.4
3,036,573	+		GFF2983	0.34	-0.9
3,036,581	-		GFF2983	0.34	-0.9
3,036,590	+		GFF2983	0.35	-1.3
3,036,606	+		GFF2983	0.36	+1.2
3,036,614	-		GFF2983	0.36	-0.8
3,036,629	+		GFF2983	0.37	-1.4
3,036,638	+		GFF2983	0.37	-1.5
3,036,646	-		GFF2983	0.38	-0.2
3,036,646	-		GFF2983	0.38	+1.2
3,036,646	-		GFF2983	0.38	-1.3
3,036,646	-		GFF2983	0.38	-1.5
3,036,650	+		GFF2983	0.38	-1.4
3,036,651	-		GFF2983	0.38	-1.4
3,036,651	-		GFF2983	0.38	-1.1
3,036,657	+		GFF2983	0.38	-1.2
3,036,663	-		GFF2983	0.39	-1.3
3,036,674	+		GFF2983	0.39	-0.5
3,036,682	-		GFF2983	0.40	-0.3
3,036,696	+		GFF2983	0.41	-0.4
3,036,714	-		GFF2983	0.42	+0.4
3,036,723	+		GFF2983	0.42	-0.4
3,036,731	+		GFF2983	0.43	-0.2
3,036,739	-		GFF2983	0.43	+0.5
3,036,762	+		GFF2983	0.45	-0.5
3,036,762	+		GFF2983	0.45	+0.9
3,036,762	+		GFF2983	0.45	-0.4
3,036,762	+		GFF2983	0.45	-0.2
3,036,770	-		GFF2983	0.45	-0.1
3,036,770	-		GFF2983	0.45	-0.9
3,036,770	-		GFF2983	0.45	+0.8
3,036,772	+		GFF2983	0.45	-2.0
3,036,779	-		GFF2983	0.46	-1.1
3,036,781	+		GFF2983	0.46	-0.4
3,036,800	+		GFF2983	0.47	+0.5
3,036,800	+		GFF2983	0.47	+0.8
3,036,800	+		GFF2983	0.47	+0.5
3,036,800	+		GFF2983	0.47	-0.7
3,036,800	+		GFF2983	0.47	+0.5
3,036,800	+		GFF2983	0.47	-0.0
3,036,800	+		GFF2983	0.47	+0.4
3,036,800	+		GFF2983	0.47	-1.6
3,036,800	+		GFF2983	0.47	+0.3
3,036,800	+		GFF2983	0.47	-2.4
3,036,800	+		GFF2983	0.47	-1.5
3,036,800	+		GFF2983	0.47	+0.1
3,036,800	+		GFF2983	0.47	+0.0
3,036,800	+		GFF2983	0.47	-0.3
3,036,805	+		GFF2983	0.47	-1.0
3,036,805	+		GFF2983	0.47	-0.9
3,036,808	-		GFF2983	0.47	+0.4
3,036,808	-		GFF2983	0.47	+0.6
3,036,808	-		GFF2983	0.47	-0.5
3,036,808	-		GFF2983	0.47	-1.0
3,036,808	-		GFF2983	0.47	+1.4
3,036,808	-		GFF2983	0.47	-0.1
3,036,808	-		GFF2983	0.47	-0.4
3,036,808	-		GFF2983	0.47	-1.4
3,036,808	-		GFF2983	0.47	-0.2
3,036,808	-		GFF2983	0.47	+0.5
3,036,808	-		GFF2983	0.47	-1.4
3,036,808	-		GFF2983	0.47	-0.5
3,036,810	+		GFF2983	0.47	+0.8
3,036,810	+		GFF2983	0.47	-0.9
3,036,810	+		GFF2983	0.47	-0.9
3,036,810	+		GFF2983	0.47	+0.4
3,036,811	+		GFF2983	0.48	-0.2
3,036,811	+		GFF2983	0.48	-0.5
3,036,811	+		GFF2983	0.48	-1.2
3,036,811	+		GFF2983	0.48	+0.7
3,036,813	-		GFF2983	0.48	-1.1
3,036,813	-		GFF2983	0.48	-1.2
3,036,818	-		GFF2983	0.48	-2.3
3,036,818	-		GFF2983	0.48	-1.3
3,036,818	-		GFF2983	0.48	-2.2
3,036,818	-		GFF2983	0.48	-0.6
3,036,818	-		GFF2983	0.48	-0.6
3,036,818	-		GFF2983	0.48	+0.7
3,036,818	-		GFF2983	0.48	-0.6
3,036,818	-		GFF2983	0.48	+0.6
3,036,819	-		GFF2983	0.48	+0.6
3,036,819	-		GFF2983	0.48	-0.4
3,036,827	+		GFF2983	0.48	-1.5
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3,036,837	-		GFF2983	0.49	+1.7
3,036,841	-		GFF2983	0.49	-0.8
3,036,844	+		GFF2983	0.49	+0.6
3,036,844	+		GFF2983	0.49	+1.1
3,036,849	+		GFF2983	0.50	-0.7
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3,036,849	+		GFF2983	0.50	+0.5
3,036,849	+		GFF2983	0.50	-0.9
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3,036,849	+		GFF2983	0.50	-0.6
3,036,849	+		GFF2983	0.50	-1.3
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3,036,854	+		GFF2983	0.50	-1.4
3,036,857	-		GFF2983	0.50	-1.6
3,036,857	-		GFF2983	0.50	-1.7
3,036,857	-		GFF2983	0.50	-1.9
3,036,857	-		GFF2983	0.50	-0.5
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3,036,905	+		GFF2983	0.53	-0.1
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3,036,937	-		GFF2983	0.55	-0.2
3,036,946	-		GFF2983	0.55	-1.4
3,036,972	+		GFF2983	0.57	-0.4
3,036,980	-		GFF2983	0.57	+0.1
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3,036,980	-		GFF2983	0.57	-0.7
3,036,980	-		GFF2983	0.57	-1.1
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3,036,980	-		GFF2983	0.57	-0.8
3,036,980	-		GFF2983	0.57	-1.8
3,036,980	-		GFF2983	0.57	-0.2