Strain Fitness in Sphingobium sp. HT1-2 around GFF2891

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,951,096	-		GFF2889	0.26	+1.8
2,951,096	-		GFF2889	0.26	+0.6
2,951,104	+		GFF2889	0.29	-1.2
2,951,104	-		GFF2889	0.29	-0.1
2,951,105	+		GFF2889	0.29	-0.2
2,951,113	-		GFF2889	0.33	-0.1
2,951,138	+		GFF2889	0.43	+0.5
2,951,138	+		GFF2889	0.43	-0.8
2,951,138	+		GFF2889	0.43	-0.3
2,951,141	-		GFF2889	0.44	-1.4
2,951,146	-		GFF2889	0.46	-1.4
2,951,174	+		GFF2889	0.57	-0.1
2,951,234	+		GFF2889	0.81	-0.6
2,951,299	-				-1.5
2,951,299	-				-0.9
2,951,308	-				-1.8
2,951,420	+		GFF2890	0.15	-0.8
2,951,448	-		GFF2890	0.19	-1.0
2,951,530	-		GFF2890	0.31	-0.2
2,951,543	+		GFF2890	0.33	+1.1
2,951,551	-		GFF2890	0.34	-0.6
2,951,551	-		GFF2890	0.34	-0.8
2,951,551	-		GFF2890	0.34	-0.2
2,951,551	-		GFF2890	0.34	-0.0
2,951,618	+		GFF2890	0.44	-0.3
2,951,627	-		GFF2890	0.45	+0.5
2,951,730	+		GFF2890	0.60	+0.5
2,951,776	-		GFF2890	0.67	-0.3
2,951,797	-		GFF2890	0.70	-0.7
2,951,797	-		GFF2890	0.70	-0.8
2,951,817	-		GFF2890	0.73	-0.2
2,951,906	+		GFF2890	0.86	-0.5
2,951,936	+				-0.8
2,951,953	+				-0.8
2,951,961	-				-0.9
2,951,961	-				+0.2
2,951,961	-				-0.3
2,951,972	+				-0.6
2,952,008	-				-0.0
2,952,008	-				-1.7
2,952,021	+				-0.8
2,952,026	+				+1.4
2,952,027	+				-1.8
2,952,027	+				-0.5
2,952,027	+				-0.6
2,952,029	-				-1.6
2,952,035	-				-1.6
2,952,035	-				-0.2
2,952,057	+				-0.3
2,952,072	+				-0.1
2,952,072	+				-0.8
2,952,072	+				-0.2
2,952,072	+				-1.5
2,952,076	+				-1.1
2,952,080	-				+1.2
2,952,080	-				-0.8
2,952,080	-				+0.2
2,952,084	+				-0.2
2,952,090	+				+0.2
2,952,092	-				-0.8
2,952,098	-				-1.4
2,952,143	-				-0.2
2,952,202	+		GFF2891	0.15	+0.8
2,952,210	-		GFF2891	0.16	-1.1
2,952,210	-		GFF2891	0.16	-0.2
2,952,284	+		GFF2891	0.26	-0.8
2,952,289	+		GFF2891	0.26	-0.5
2,952,297	-		GFF2891	0.27	-0.3
2,952,297	-		GFF2891	0.27	-0.3
2,952,363	+		GFF2891	0.36	-0.2
2,952,690	-		GFF2891	0.79	+0.7
2,952,817	+				-0.7
2,952,817	+				-0.6
2,952,825	-				-0.1
2,952,829	+				-0.3
2,952,829	+				+0.8
2,952,829	+				-0.7
2,952,829	+				-0.6
2,952,829	+				-0.3
2,952,829	+				-1.3
2,952,829	+				+0.3
2,952,829	+				-0.7
2,952,829	+				-0.6
2,952,832	-				+0.2
2,952,834	+				-1.3
2,952,834	+				-0.3
2,952,834	+				-0.8
2,952,837	-				-0.3
2,952,837	-				-1.9
2,952,837	-				-0.6
2,952,837	-				-0.1
2,952,837	-				-0.6
2,952,837	-				-0.0
2,952,837	-				+0.2
2,952,837	-				-1.5
2,952,837	-				+0.5
2,952,837	-				+0.6
2,952,837	-				-0.2
2,952,837	-				-2.7
2,952,837	-				+0.9
2,952,837	-				-0.7
2,952,837	-				+0.5
2,952,837	-				-0.4
2,952,837	-				-1.5
2,952,837	-				+0.1
2,952,842	-				+0.7
2,952,842	-				-1.8
2,952,842	-				-0.6
2,952,842	-				+1.2
2,952,842	-				-0.5
2,952,842	-				+1.0
2,952,842	-				-1.3
2,952,876	-				-0.3
2,952,878	-				+1.1
2,952,883	-				+0.2
2,952,883	-				-0.7
2,952,898	+				+0.2
2,952,899	-				-0.8
2,952,945	-				+0.0
2,952,948	+				+0.1
2,952,948	+				-1.3
2,952,948	+				-3.5
2,952,948	+				-0.8
2,952,948	+				-0.0
2,952,956	-				-1.0
2,952,956	-				-2.6
2,952,956	-				+1.3
2,952,956	-				-1.8
2,952,956	-				-0.1
2,952,956	-				-0.7
2,952,989	+				-0.8
2,952,990	-				-1.2
2,952,998	+				-0.8
2,952,999	+				-1.2
2,953,000	+				+0.2
2,953,000	+				-0.7
2,953,000	+				-0.3
2,953,005	+				-1.0
2,953,005	+				+1.4
2,953,005	+				-1.2
2,953,005	+				-0.5
2,953,008	-				-0.6
2,953,008	-				+0.2
2,953,012	+				-0.3
2,953,013	-				-0.2
2,953,013	-				-0.8
2,953,020	-				-0.8
2,953,032	-		GFF2892	0.10	-0.8
2,953,032	-		GFF2892	0.10	-0.6
2,953,035	+		GFF2892	0.11	-2.7
2,953,043	-		GFF2892	0.14	-0.7
2,953,043	-		GFF2892	0.14	+0.7
2,953,057	+		GFF2892	0.19	-0.0
2,953,062	+		GFF2892	0.21	-1.1
2,953,062	+		GFF2892	0.21	-0.9
2,953,062	+		GFF2892	0.21	-0.8
2,953,062	+		GFF2892	0.21	-0.5
2,953,062	+		GFF2892	0.21	-0.6
2,953,067	+		GFF2892	0.22	-1.0
2,953,070	-		GFF2892	0.23	-0.3
2,953,070	-		GFF2892	0.23	-0.1
2,953,070	-		GFF2892	0.23	-0.7
2,953,070	-		GFF2892	0.23	+1.3
2,953,070	-		GFF2892	0.23	-1.5
2,953,070	-		GFF2892	0.23	-1.2
2,953,099	+		GFF2892	0.33	+0.2
2,953,155	+		GFF2892	0.53	-0.8
2,953,160	+		GFF2892	0.54	+0.1
2,953,163	+		GFF2892	0.55	-0.9
2,953,178	+		GFF2892	0.60	-1.2
2,953,178	+		GFF2892	0.60	-2.5
2,953,178	+		GFF2892	0.60	-0.6
2,953,178	+		GFF2892	0.60	+1.5
2,953,178	+		GFF2892	0.60	+0.8
2,953,178	+		GFF2892	0.60	-0.5
2,953,178	+		GFF2892	0.60	-0.8
2,953,186	-		GFF2892	0.63	+0.1
2,953,186	-		GFF2892	0.63	-1.9
2,953,186	-		GFF2892	0.63	-2.6
2,953,186	-		GFF2892	0.63	-1.0
2,953,186	-		GFF2892	0.63	+0.8
2,953,186	-		GFF2892	0.63	+1.2
2,953,186	-		GFF2892	0.63	-0.9
2,953,186	-		GFF2892	0.63	+1.1
2,953,186	-		GFF2892	0.63	+0.5
2,953,186	-		GFF2892	0.63	-0.8
2,953,186	-		GFF2892	0.63	+0.2
2,953,203	-		GFF2892	0.69	+1.1
2,953,211	+		GFF2892	0.72	-0.8
2,953,221	+		GFF2892	0.75	+0.2
2,953,243	-		GFF2892	0.83	+0.3
2,953,244	-		GFF2892	0.83	+0.4
2,953,244	-		GFF2892	0.83	+0.6
2,953,258	-		GFF2892	0.88	+0.3
2,953,276	-				+0.4
2,953,282	+				+1.0
2,953,284	-				-0.8
2,953,284	-				-0.6
2,953,290	-				-1.8
2,953,290	-				-0.1
2,953,324	-				-2.3
2,953,332	-				-2.8
2,953,334	-				-1.3
2,953,349	-				-0.4
2,953,356	+				-0.5
2,953,361	+				-2.0
2,953,361	+				-2.3
2,953,369	-		GFF2893	0.11	-2.2
2,953,369	-		GFF2893	0.11	-2.3
2,953,392	+		GFF2893	0.14	-0.6
2,953,399	-		GFF2893	0.15	-1.3
2,953,404	-		GFF2893	0.15	-1.9
2,953,418	-		GFF2893	0.17	-1.7
2,953,436	-		GFF2893	0.20	-1.5
2,953,443	+		GFF2893	0.21	-1.0
2,953,463	-		GFF2893	0.24	-1.7
2,953,474	+		GFF2893	0.25	-1.5
2,953,474	+		GFF2893	0.25	-2.3
2,953,476	+		GFF2893	0.25	-2.1
2,953,482	-		GFF2893	0.26	-1.1
2,953,486	-		GFF2893	0.27	-2.1
2,953,534	+		GFF2893	0.33	-1.1
2,953,554	+		GFF2893	0.36	-0.5
2,953,575	+		GFF2893	0.39	-2.5
2,953,575	+		GFF2893	0.39	-2.3
2,953,575	+		GFF2893	0.39	-1.7
2,953,575	+		GFF2893	0.39	-0.7
2,953,578	-		GFF2893	0.40	-2.2
2,953,583	-		GFF2893	0.40	-0.4
2,953,583	-		GFF2893	0.40	-0.9
2,953,619	+		GFF2893	0.45	-1.4
2,953,629	+		GFF2893	0.47	-2.1
2,953,666	-		GFF2893	0.52	-1.5
2,953,690	+		GFF2893	0.55	-1.9
2,953,697	-		GFF2893	0.56	-0.3
2,953,703	-		GFF2893	0.57	-2.8
2,953,728	+		GFF2893	0.60	-2.4
2,953,731	-		GFF2893	0.61	-2.6
2,953,736	-		GFF2893	0.61	-2.5
2,953,757	+		GFF2893	0.64	-1.9
2,953,765	-		GFF2893	0.65	-0.8
2,953,765	-		GFF2893	0.65	-2.9
2,953,772	+		GFF2893	0.66	-1.3
2,953,777	+		GFF2893	0.67	-2.3
2,953,796	-		GFF2893	0.70	-1.4
2,953,800	+		GFF2893	0.70	-2.5
2,953,815	+		GFF2893	0.72	-1.2
2,953,822	+		GFF2893	0.73	-3.5
2,953,822	+		GFF2893	0.73	-1.2
2,953,822	+		GFF2893	0.73	-4.3
2,953,823	-		GFF2893	0.73	-0.0
2,953,830	-		GFF2893	0.74	-0.8
2,953,831	-		GFF2893	0.75	-2.2
2,953,832	+		GFF2893	0.75	-2.4
2,953,832	+		GFF2893	0.75	-1.9
2,953,832	+		GFF2893	0.75	-0.1
2,953,832	+		GFF2893	0.75	-0.0
2,953,832	+		GFF2893	0.75	-2.0
2,953,832	+		GFF2893	0.75	-1.9
2,953,832	+		GFF2893	0.75	-2.2
2,953,832	+		GFF2893	0.75	-2.3
2,953,832	+		GFF2893	0.75	-2.2
2,953,835	-		GFF2893	0.75	+0.7
2,953,835	-		GFF2893	0.75	-1.3
2,953,840	-		GFF2893	0.76	-0.9
2,953,840	-		GFF2893	0.76	-1.7
2,953,840	-		GFF2893	0.76	+0.4
2,953,840	-		GFF2893	0.76	-1.8
2,953,840	-		GFF2893	0.76	-0.7
2,953,840	-		GFF2893	0.76	+0.4
2,953,840	-		GFF2893	0.76	-2.8
2,953,840	-		GFF2893	0.76	-1.8
2,953,840	-		GFF2893	0.76	-1.6
2,953,840	-		GFF2893	0.76	-1.1
2,953,840	-		GFF2893	0.76	-1.7
2,953,840	-		GFF2893	0.76	-1.7