Strain Fitness in Sphingobium sp. HT1-2 around GFF2758

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,787,095	+		GFF2756	0.88	+0.3
2,787,095	+		GFF2756	0.88	-0.3
2,787,095	+		GFF2756	0.88	-1.8
2,787,095	+		GFF2756	0.88	-0.7
2,787,095	+		GFF2756	0.88	-0.5
2,787,100	+		GFF2756	0.88	+0.0
2,787,100	+		GFF2756	0.88	-0.3
2,787,100	+		GFF2756	0.88	-0.2
2,787,103	-		GFF2756	0.89	-1.1
2,787,103	-		GFF2756	0.89	-2.0
2,787,103	-		GFF2756	0.89	+1.3
2,787,103	-		GFF2756	0.89	-0.3
2,787,103	-		GFF2756	0.89	-0.8
2,787,103	-		GFF2756	0.89	+1.7
2,787,103	-		GFF2756	0.89	+0.6
2,787,103	-		GFF2756	0.89	+0.9
2,787,103	-		GFF2756	0.89	+0.6
2,787,103	-		GFF2756	0.89	-1.8
2,787,103	-		GFF2756	0.89	+0.9
2,787,103	-		GFF2756	0.89	-1.9
2,787,103	-		GFF2756	0.89	-0.3
2,787,105	+		GFF2756	0.89	-0.1
2,787,108	-		GFF2756	0.89	-0.6
2,787,108	-		GFF2756	0.89	+0.7
2,787,113	+		GFF2756	0.89	+0.8
2,787,114	+		GFF2756	0.89	-0.4
2,787,114	-		GFF2756	0.89	-0.1
2,787,123	+				+0.7
2,787,141	-				+0.7
2,787,147	-				-2.2
2,787,152	-				-1.3
2,787,165	+				-1.7
2,787,166	+				-1.4
2,787,180	-				+0.6
2,787,183	-				+0.4
2,787,194	+				-0.2
2,787,194	+				-1.7
2,787,197	-				-0.9
2,787,202	-				-2.0
2,787,202	-				-0.4
2,787,208	-				-0.3
2,787,210	-				+0.0
2,787,216	+				+0.3
2,787,228	+				+0.2
2,787,234	+				+1.0
2,787,241	-				-0.6
2,787,242	-				-0.4
2,787,252	+				-0.7
2,787,252	+				-0.6
2,787,260	-				-1.2
2,787,264	+				-1.3
2,787,272	-				-1.6
2,787,290	+				-0.7
2,787,290	+				+0.2
2,787,297	+				-1.6
2,787,297	+				+1.8
2,787,298	-				-0.9
2,787,315	+				-1.1
2,787,315	+				-0.6
2,787,315	+				-0.9
2,787,323	-				-1.1
2,787,323	-				+0.3
2,787,323	-				-0.3
2,787,323	-				-0.7
2,787,323	-				+1.7
2,787,327	-				+0.1
2,787,344	-				-0.3
2,787,344	-				+2.1
2,787,349	+				-0.2
2,787,358	+				-1.1
2,787,384	+		GFF2757	0.13	-0.2
2,787,384	+		GFF2757	0.13	-2.4
2,787,384	+		GFF2757	0.13	+0.0
2,787,384	+		GFF2757	0.13	+1.1
2,787,384	+		GFF2757	0.13	-0.3
2,787,384	+		GFF2757	0.13	-0.1
2,787,384	+		GFF2757	0.13	-0.4
2,787,384	+		GFF2757	0.13	-0.7
2,787,392	-		GFF2757	0.14	+0.0
2,787,392	-		GFF2757	0.14	+0.2
2,787,392	-		GFF2757	0.14	-0.9
2,787,392	-		GFF2757	0.14	-0.4
2,787,400	+		GFF2757	0.15	-0.8
2,787,423	+		GFF2757	0.19	-0.4
2,787,433	-		GFF2757	0.20	-1.1
2,787,441	-		GFF2757	0.21	-0.9
2,787,455	+		GFF2757	0.23	+0.3
2,787,463	-		GFF2757	0.25	+0.3
2,787,469	-		GFF2757	0.26	-1.3
2,787,470	+		GFF2757	0.26	-1.3
2,787,484	-		GFF2757	0.28	-1.0
2,787,511	+		GFF2757	0.32	-0.7
2,787,517	+		GFF2757	0.33	-0.1
2,787,532	+		GFF2757	0.35	-1.8
2,787,532	+		GFF2757	0.35	-2.0
2,787,538	-		GFF2757	0.36	-0.1
2,787,540	-		GFF2757	0.36	+0.5
2,787,559	+		GFF2757	0.39	+0.1
2,787,559	+		GFF2757	0.39	+0.7
2,787,567	-		GFF2757	0.40	-1.5
2,787,586	+		GFF2757	0.43	-1.0
2,787,586	+		GFF2757	0.43	-1.7
2,787,586	+		GFF2757	0.43	-1.1
2,787,594	-		GFF2757	0.44	-0.9
2,787,594	-		GFF2757	0.44	+0.1
2,787,594	-		GFF2757	0.44	-0.3
2,787,597	+		GFF2757	0.45	+0.1
2,787,601	+		GFF2757	0.45	-0.5
2,787,601	+		GFF2757	0.45	+0.8
2,787,605	-		GFF2757	0.46	-1.3
2,787,605	-		GFF2757	0.46	+0.3
2,787,605	-		GFF2757	0.46	+0.3
2,787,605	-		GFF2757	0.46	+0.5
2,787,605	-		GFF2757	0.46	-0.1
2,787,609	-		GFF2757	0.47	-0.2
2,787,609	-		GFF2757	0.47	+1.1
2,787,609	-		GFF2757	0.47	+0.2
2,787,616	+		GFF2757	0.48	+0.8
2,787,645	-		GFF2757	0.52	+0.3
2,787,652	+		GFF2757	0.53	+0.2
2,787,662	-		GFF2757	0.55	-0.7
2,787,689	+		GFF2757	0.59	+0.2
2,787,689	+		GFF2757	0.59	-1.1
2,787,696	+		GFF2757	0.60	-1.9
2,787,696	+		GFF2757	0.60	-1.4
2,787,773	+		GFF2757	0.71	-1.3
2,787,773	+		GFF2757	0.71	+0.1
2,787,781	+		GFF2757	0.72	-0.6
2,787,781	+		GFF2757	0.72	-0.9
2,787,781	+		GFF2757	0.72	+0.7
2,787,781	+		GFF2757	0.72	-2.0
2,787,781	+		GFF2757	0.72	+0.3
2,787,781	+		GFF2757	0.72	-2.3
2,787,781	+		GFF2757	0.72	-3.3
2,787,781	-		GFF2757	0.72	-1.8
2,787,781	-		GFF2757	0.72	-2.4
2,787,789	-		GFF2757	0.74	+1.4
2,787,789	-		GFF2757	0.74	+0.6
2,787,789	-		GFF2757	0.74	-2.1
2,787,789	-		GFF2757	0.74	-1.1
2,787,798	-		GFF2757	0.75	-1.4
2,787,811	+		GFF2757	0.77	+0.2
2,787,811	+		GFF2757	0.77	-0.3
2,787,811	+		GFF2757	0.77	-0.1
2,787,811	+		GFF2757	0.77	-0.8
2,787,813	-		GFF2757	0.77	+0.1
2,787,819	-		GFF2757	0.78	+0.4
2,787,819	-		GFF2757	0.78	+0.8
2,787,819	-		GFF2757	0.78	-0.4
2,787,819	-		GFF2757	0.78	+0.8
2,787,819	-		GFF2757	0.78	-0.7
2,787,819	-		GFF2757	0.78	-0.7
2,787,825	+		GFF2757	0.79	-0.8
2,787,834	-		GFF2757	0.80	-0.4
2,787,835	+		GFF2757	0.80	-0.1
2,787,835	-		GFF2757	0.80	-0.3
2,787,862	+		GFF2757	0.85	-2.0
2,787,872	+		GFF2757	0.86	+0.8
2,787,915	+				+0.0
2,787,937	+				-0.7
2,787,964	+				-0.1
2,787,964	+				-1.1
2,787,970	-				+0.8
2,787,980	-				-2.4
2,788,097	+		GFF2758	0.22	-1.4
2,788,097	-		GFF2758	0.22	-1.9
2,788,129	+		GFF2758	0.40	-0.3
2,788,129	+		GFF2758	0.40	-1.1
2,788,129	+		GFF2758	0.40	-0.5
2,788,129	+		GFF2758	0.40	-1.3
2,788,137	-		GFF2758	0.45	+0.7
2,788,152	-		GFF2758	0.54	-0.3
2,788,171	+		GFF2758	0.65	-0.7
2,788,250	-				+0.9
2,788,263	+				-1.8
2,788,265	-				+0.4
2,788,278	+				-0.5
2,788,281	-				+0.2
2,788,286	-				+0.3
2,788,286	-				+0.3
2,788,289	+				-0.9
2,788,289	-				-0.7
2,788,297	-				-1.1
2,788,299	+				+0.4
2,788,328	+				+0.7
2,788,328	+				+0.2
2,788,333	+				-1.6
2,788,336	-				+0.8
2,788,336	-				+0.2
2,788,336	-				-0.7
2,788,341	-				-0.1
2,788,341	-				+0.8
2,788,359	-				-1.0
2,788,389	+				-0.7
2,788,399	+				-0.3
2,788,407	-		GFF2759	0.10	-1.3
2,788,407	-		GFF2759	0.10	-0.1
2,788,407	-		GFF2759	0.10	-0.3
2,788,412	-		GFF2759	0.10	-0.9
2,788,440	-		GFF2759	0.12	-0.8
2,788,459	+		GFF2759	0.13	-0.7
2,788,469	+		GFF2759	0.14	+0.0
2,788,469	+		GFF2759	0.14	+1.1
2,788,469	+		GFF2759	0.14	-1.7
2,788,469	+		GFF2759	0.14	+0.1
2,788,469	+		GFF2759	0.14	-1.8
2,788,469	+		GFF2759	0.14	-0.7
2,788,469	+		GFF2759	0.14	-0.3
2,788,469	+		GFF2759	0.14	-0.1
2,788,477	-		GFF2759	0.14	+0.0
2,788,477	-		GFF2759	0.14	+0.4
2,788,477	-		GFF2759	0.14	-0.7
2,788,477	-		GFF2759	0.14	-1.3
2,788,477	-		GFF2759	0.14	+0.7
2,788,477	-		GFF2759	0.14	-0.6
2,788,477	-		GFF2759	0.14	-0.4
2,788,477	-		GFF2759	0.14	+1.4
2,788,477	-		GFF2759	0.14	-0.5
2,788,477	-		GFF2759	0.14	-1.0
2,788,477	-		GFF2759	0.14	-0.6
2,788,477	-		GFF2759	0.14	-0.6
2,788,477	-		GFF2759	0.14	-1.3
2,788,477	-		GFF2759	0.14	-0.4
2,788,486	+		GFF2759	0.15	-1.2
2,788,486	+		GFF2759	0.15	-0.4
2,788,487	+		GFF2759	0.15	+0.4
2,788,493	+		GFF2759	0.15	-1.3
2,788,494	-		GFF2759	0.15	-1.2
2,788,497	+		GFF2759	0.16	+0.2
2,788,500	-		GFF2759	0.16	+1.1
2,788,501	-		GFF2759	0.16	-1.2
2,788,533	+		GFF2759	0.18	-0.8
2,788,541	-		GFF2759	0.18	+0.1
2,788,541	-		GFF2759	0.18	+0.6
2,788,549	+		GFF2759	0.19	-1.9
2,788,549	+		GFF2759	0.19	-0.6
2,788,557	-		GFF2759	0.19	+0.3
2,788,629	-		GFF2759	0.24	+1.6
2,788,643	+		GFF2759	0.24	-1.6
2,788,651	+		GFF2759	0.25	+0.6
2,788,651	+		GFF2759	0.25	-0.3
2,788,651	+		GFF2759	0.25	-2.4
2,788,659	-		GFF2759	0.25	-2.8
2,788,659	-		GFF2759	0.25	-0.2
2,788,670	-		GFF2759	0.26	-0.4
2,788,670	-		GFF2759	0.26	-0.3
2,788,670	-		GFF2759	0.26	-1.1
2,788,679	+		GFF2759	0.27	+0.3
2,788,679	+		GFF2759	0.27	-1.1
2,788,682	-		GFF2759	0.27	-0.5
2,788,687	-		GFF2759	0.27	-1.0
2,788,687	-		GFF2759	0.27	+0.3
2,788,699	+		GFF2759	0.28	-1.1
2,788,699	+		GFF2759	0.28	+0.3
2,788,699	+		GFF2759	0.28	-0.3
2,788,707	-		GFF2759	0.28	-1.4
2,788,707	-		GFF2759	0.28	-0.7
2,788,707	-		GFF2759	0.28	-0.1
2,788,707	-		GFF2759	0.28	-1.7
2,788,743	-		GFF2759	0.31	-1.0
2,788,744	+		GFF2759	0.31	+0.7
2,788,744	+		GFF2759	0.31	-1.4
2,788,746	+		GFF2759	0.31	+0.4
2,788,752	-		GFF2759	0.31	-2.1
2,788,771	+		GFF2759	0.32	-0.2
2,788,779	-		GFF2759	0.33	-0.1
2,788,779	-		GFF2759	0.33	-0.4
2,788,779	-		GFF2759	0.33	+0.1
2,788,779	-		GFF2759	0.33	-0.2
2,788,779	-		GFF2759	0.33	-1.7
2,788,793	+		GFF2759	0.34	-0.9
2,788,793	+		GFF2759	0.34	+0.0
2,788,796	-		GFF2759	0.34	-0.6
2,788,801	+		GFF2759	0.34	-1.7
2,788,801	+		GFF2759	0.34	-0.8
2,788,809	-		GFF2759	0.35	-0.3
2,788,809	-		GFF2759	0.35	-0.7
2,788,848	+		GFF2759	0.37	+0.4
2,788,848	+		GFF2759	0.37	+1.0
2,788,851	-		GFF2759	0.37	-1.5
2,788,856	-		GFF2759	0.37	+1.0
2,788,856	-		GFF2759	0.37	-0.7
2,788,856	-		GFF2759	0.37	-0.2
2,788,856	-		GFF2759	0.37	-1.0
2,788,856	-		GFF2759	0.37	-0.4
2,788,881	+		GFF2759	0.39	+0.6
2,788,882	+		GFF2759	0.39	+0.1
2,788,889	-		GFF2759	0.40	-0.7
2,788,889	-		GFF2759	0.40	-1.0
2,788,897	-		GFF2759	0.40	-0.9
2,788,902	+		GFF2759	0.40	-0.7
2,788,902	+		GFF2759	0.40	-1.1
2,788,908	+		GFF2759	0.41	+0.4
2,788,910	-		GFF2759	0.41	-0.2
2,788,910	-		GFF2759	0.41	+1.1
2,788,945	-		GFF2759	0.43	+0.9
2,788,950	-		GFF2759	0.43	+0.4
2,789,004	+		GFF2759	0.47	-0.5
2,789,021	-		GFF2759	0.48	-1.3
2,789,027	-		GFF2759	0.48	-0.8
2,789,034	+		GFF2759	0.48	-1.9
2,789,078	+		GFF2759	0.51	-0.7
2,789,079	+		GFF2759	0.51	-0.8
2,789,088	+		GFF2759	0.52	-2.2
2,789,088	+		GFF2759	0.52	+0.4
2,789,094	-		GFF2759	0.52	-0.7
2,789,141	-		GFF2759	0.55	-0.7
2,789,151	+		GFF2759	0.56	-1.0
2,789,153	+		GFF2759	0.56	-0.4
2,789,153	+		GFF2759	0.56	-1.4
2,789,153	+		GFF2759	0.56	-0.2
2,789,153	+		GFF2759	0.56	-0.2
2,789,153	+		GFF2759	0.56	-0.1
2,789,153	+		GFF2759	0.56	+0.2
2,789,153	+		GFF2759	0.56	-0.6
2,789,153	+		GFF2759	0.56	+0.8
2,789,154	-		GFF2759	0.56	-1.4
2,789,158	+		GFF2759	0.56	-1.7
2,789,159	-		GFF2759	0.56	-0.3
2,789,161	-		GFF2759	0.56	+0.9
2,789,161	-		GFF2759	0.56	+0.6
2,789,161	-		GFF2759	0.56	-2.3
2,789,161	-		GFF2759	0.56	-0.7
2,789,161	-		GFF2759	0.56	+0.3
2,789,161	-		GFF2759	0.56	-0.1
2,789,161	-		GFF2759	0.56	-0.1
2,789,161	-		GFF2759	0.56	+0.3
2,789,161	-		GFF2759	0.56	-1.3
2,789,161	-		GFF2759	0.56	-0.2
2,789,169	+		GFF2759	0.57	-0.4
2,789,174	+		GFF2759	0.57	+0.9
2,789,177	-		GFF2759	0.57	-0.6
2,789,177	-		GFF2759	0.57	+0.3
2,789,177	-		GFF2759	0.57	+0.6
2,789,177	-		GFF2759	0.57	+0.5
2,789,177	-		GFF2759	0.57	-1.4
2,789,182	-		GFF2759	0.57	-0.3
2,789,191	-		GFF2759	0.58	-0.2
2,789,212	+		GFF2759	0.59	+0.5