Strain Fitness in Sphingobium sp. HT1-2 around GFF2729

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,751,095	+		GFF2727	0.84	-0.8
2,751,101	+		GFF2727	0.85	-0.3
2,751,103	-		GFF2727	0.85	+0.2
2,751,103	-		GFF2727	0.85	-0.6
2,751,126	-		GFF2727	0.89	+1.2
2,751,130	+		GFF2727	0.89	+0.1
2,751,130	+		GFF2727	0.89	+0.1
2,751,130	+		GFF2727	0.89	+1.8
2,751,138	-				-0.3
2,751,138	-				-0.5
2,751,140	+				-2.4
2,751,150	+				+0.1
2,751,158	-				-2.5
2,751,163	+				-0.8
2,751,171	-				+0.3
2,751,208	-				-1.4
2,751,211	+				-1.1
2,751,211	+				+0.7
2,751,211	+				+0.4
2,751,211	+				-1.9
2,751,211	+				-0.6
2,751,211	+				-0.6
2,751,212	+				+0.8
2,751,212	+				-0.3
2,751,219	-				+0.8
2,751,219	-				-1.5
2,751,220	-				-0.2
2,751,225	-				-0.6
2,751,227	+				+0.5
2,751,227	+				-0.5
2,751,235	-				-0.4
2,751,235	-				+1.6
2,751,236	+				+1.8
2,751,278	+				-0.7
2,751,288	+				-0.8
2,751,291	-				+0.9
2,751,291	-				-0.9
2,751,309	+				-0.2
2,751,309	+				-1.6
2,751,309	+				+1.3
2,751,309	+				+1.6
2,751,317	-		GFF2728	0.11	+0.1
2,751,328	+		GFF2728	0.12	+1.0
2,751,329	-		GFF2728	0.12	+0.1
2,751,344	+		GFF2728	0.14	+0.8
2,751,344	+		GFF2728	0.14	+1.1
2,751,344	+		GFF2728	0.14	-0.9
2,751,360	+		GFF2728	0.16	-0.3
2,751,365	+		GFF2728	0.17	-0.3
2,751,370	+		GFF2728	0.17	-0.7
2,751,370	+		GFF2728	0.17	-0.6
2,751,388	+		GFF2728	0.19	+0.2
2,751,436	+		GFF2728	0.25	-0.5
2,751,436	+		GFF2728	0.25	-0.3
2,751,436	+		GFF2728	0.25	-1.2
2,751,443	+		GFF2728	0.26	+0.6
2,751,443	+		GFF2728	0.26	+0.5
2,751,444	-		GFF2728	0.26	+0.1
2,751,451	-		GFF2728	0.27	+0.7
2,751,451	-		GFF2728	0.27	+0.8
2,751,451	-		GFF2728	0.27	-0.1
2,751,453	-		GFF2728	0.27	+1.0
2,751,458	-		GFF2728	0.28	+0.7
2,751,460	+		GFF2728	0.28	+1.4
2,751,470	+		GFF2728	0.29	+1.3
2,751,478	-		GFF2728	0.30	-0.7
2,751,478	-		GFF2728	0.30	+1.7
2,751,480	+		GFF2728	0.31	+0.1
2,751,485	+		GFF2728	0.31	-0.3
2,751,485	+		GFF2728	0.31	-1.2
2,751,485	+		GFF2728	0.31	+0.4
2,751,493	-		GFF2728	0.32	+0.5
2,751,493	-		GFF2728	0.32	+1.3
2,751,510	-		GFF2728	0.34	+0.5
2,751,510	-		GFF2728	0.34	-1.0
2,751,533	-		GFF2728	0.37	-0.9
2,751,540	-		GFF2728	0.38	+0.4
2,751,541	-		GFF2728	0.38	+0.3
2,751,541	-		GFF2728	0.38	-0.6
2,751,541	-		GFF2728	0.38	-0.0
2,751,546	-		GFF2728	0.39	+0.8
2,751,552	+		GFF2728	0.39	-1.1
2,751,607	-		GFF2728	0.46	-0.1
2,751,608	+		GFF2728	0.46	+1.0
2,751,609	+		GFF2728	0.46	+0.8
2,751,609	-		GFF2728	0.46	-1.0
2,751,616	-		GFF2728	0.47	+1.3
2,751,616	-		GFF2728	0.47	-0.3
2,751,640	+		GFF2728	0.50	+1.0
2,751,648	-		GFF2728	0.51	+1.3
2,751,648	-		GFF2728	0.51	-0.2
2,751,698	+		GFF2728	0.57	+0.6
2,751,698	+		GFF2728	0.57	+0.3
2,751,699	+		GFF2728	0.57	-1.3
2,751,706	-		GFF2728	0.58	-0.9
2,751,741	+		GFF2728	0.62	-0.4
2,751,756	+		GFF2728	0.64	+0.1
2,751,784	+		GFF2728	0.68	+1.3
2,751,784	+		GFF2728	0.68	-1.6
2,751,792	-		GFF2728	0.68	-0.7
2,751,844	-		GFF2728	0.75	+0.6
2,751,867	-		GFF2728	0.78	-0.0
2,751,933	-		GFF2728	0.86	+1.3
2,751,943	-		GFF2728	0.87	-1.0
2,751,961	+		GFF2728	0.89	+0.3
2,751,969	-				+0.5
2,751,980	+				-0.0
2,751,988	-				+0.1
2,751,988	-				-0.6
2,751,994	-				+0.8
2,751,995	+				-0.0
2,752,056	+				+0.4
2,752,062	+				-0.7
2,752,070	-				-0.6
2,752,104	+				-0.7
2,752,119	+				+1.0
2,752,141	+				+0.2
2,752,141	+				+1.1
2,752,141	+				-1.1
2,752,149	-				-0.4
2,752,149	-				+2.4
2,752,187	+				-1.2
2,752,207	-				-0.5
2,752,233	+		GFF2729	0.12	+1.1
2,752,233	+		GFF2729	0.12	-0.5
2,752,233	+		GFF2729	0.12	-0.9
2,752,233	+		GFF2729	0.12	-0.5
2,752,233	+		GFF2729	0.12	+1.3
2,752,241	-		GFF2729	0.13	-1.2
2,752,241	-		GFF2729	0.13	-0.5
2,752,241	-		GFF2729	0.13	+0.1
2,752,361	+		GFF2729	0.23	-0.8
2,752,368	+		GFF2729	0.24	-0.4
2,752,446	+		GFF2729	0.30	+0.3
2,752,448	-		GFF2729	0.30	+0.4
2,752,454	-		GFF2729	0.31	+0.1
2,752,454	-		GFF2729	0.31	+1.7
2,752,456	+		GFF2729	0.31	+2.0
2,752,514	-		GFF2729	0.36	+0.5
2,752,514	-		GFF2729	0.36	+1.0
2,752,514	-		GFF2729	0.36	+0.4
2,752,514	-		GFF2729	0.36	-0.9
2,752,514	-		GFF2729	0.36	+0.5
2,752,545	+		GFF2729	0.39	+0.7
2,752,545	+		GFF2729	0.39	+0.0
2,752,553	-		GFF2729	0.39	+0.7
2,752,553	-		GFF2729	0.39	-0.1
2,752,553	-		GFF2729	0.39	-1.1
2,752,553	-		GFF2729	0.39	+0.4
2,752,553	-		GFF2729	0.39	+0.6
2,752,553	-		GFF2729	0.39	+0.1
2,752,568	+		GFF2729	0.41	-1.7
2,752,568	-		GFF2729	0.41	-0.3
2,752,568	-		GFF2729	0.41	-0.0
2,752,569	-		GFF2729	0.41	+0.6
2,752,569	-		GFF2729	0.41	-0.7
2,752,595	+		GFF2729	0.43	-0.7
2,752,606	+		GFF2729	0.44	+0.1
2,752,614	-		GFF2729	0.45	-1.6
2,752,616	+		GFF2729	0.45	-0.5
2,752,624	-		GFF2729	0.46	+2.3
2,752,635	-		GFF2729	0.46	-0.9
2,752,667	+		GFF2729	0.49	+1.3
2,752,667	+		GFF2729	0.49	-0.4
2,752,667	+		GFF2729	0.49	-0.7
2,752,667	+		GFF2729	0.49	-0.4
2,752,667	+		GFF2729	0.49	+1.3
2,752,667	+		GFF2729	0.49	+1.1
2,752,673	-		GFF2729	0.50	+0.1
2,752,675	-		GFF2729	0.50	+0.2
2,752,675	-		GFF2729	0.50	+1.0
2,752,675	-		GFF2729	0.50	-0.2
2,752,675	-		GFF2729	0.50	-0.9
2,752,675	-		GFF2729	0.50	+2.3
2,752,677	+		GFF2729	0.50	+0.7
2,752,685	-		GFF2729	0.51	+0.6
2,752,701	+		GFF2729	0.52	-1.0
2,752,706	-		GFF2729	0.53	-1.1
2,752,723	+		GFF2729	0.54	+0.1
2,752,742	+		GFF2729	0.56	+0.0
2,752,745	+		GFF2729	0.56	-0.6
2,752,751	-		GFF2729	0.56	+0.1
2,752,751	-		GFF2729	0.56	-0.2
2,752,753	-		GFF2729	0.57	+0.8
2,752,753	-		GFF2729	0.57	-0.8
2,752,753	-		GFF2729	0.57	-2.5
2,752,758	-		GFF2729	0.57	+1.0
2,752,802	+		GFF2729	0.61	-1.5
2,752,802	+		GFF2729	0.61	+0.1
2,752,805	-		GFF2729	0.61	-0.5
2,752,810	-		GFF2729	0.61	-1.1
2,752,810	-		GFF2729	0.61	-0.2
2,752,888	-		GFF2729	0.68	-0.8
2,752,893	-		GFF2729	0.69	-0.2
2,752,894	+		GFF2729	0.69	-0.3
2,752,992	+		GFF2729	0.77	+0.7
2,753,000	-		GFF2729	0.78	+0.3
2,753,000	-		GFF2729	0.78	+0.8
2,753,011	-		GFF2729	0.79	+1.6
2,753,013	-		GFF2729	0.79	-0.0
2,753,071	-		GFF2729	0.84	+0.8
2,753,071	-		GFF2729	0.84	+1.2
2,753,072	+		GFF2729	0.84	-0.2
2,753,072	+		GFF2729	0.84	-1.4
2,753,080	-		GFF2729	0.85	-0.1
2,753,090	-		GFF2729	0.85	-0.0
2,753,116	+		GFF2729	0.88	+0.5
2,753,132	-		GFF2729	0.89	-0.4
2,753,162	-				-1.2
2,753,178	+				+0.4
2,753,183	+				-0.4
2,753,191	-				+1.0
2,753,191	-				+0.2
2,753,208	+				+1.4
2,753,209	+				+0.5
2,753,217	-				-1.9
2,753,234	-				+1.9
2,753,303	-				+0.6
2,753,318	+				-1.1
2,753,318	+				-1.9
2,753,318	+				-1.1
2,753,331	-				+1.0
2,753,334	+				-0.5
2,753,334	-				-1.9
2,753,341	-				+0.8
2,753,341	-				-1.8
2,753,360	-				+0.2
2,753,360	-				+0.1
2,753,360	-				-0.2
2,753,360	-				-1.2
2,753,375	+		GFF2730	0.11	+1.5
2,753,378	-		GFF2730	0.11	-0.7
2,753,391	+		GFF2730	0.13	+0.4
2,753,409	-		GFF2730	0.14	+1.3
2,753,462	+		GFF2730	0.19	-0.4
2,753,477	+		GFF2730	0.21	-1.1
2,753,477	+		GFF2730	0.21	-0.4
2,753,477	+		GFF2730	0.21	+0.2
2,753,477	+		GFF2730	0.21	+1.0
2,753,477	+		GFF2730	0.21	-0.7
2,753,477	+		GFF2730	0.21	+1.8
2,753,477	+		GFF2730	0.21	+0.9
2,753,477	+		GFF2730	0.21	+2.2
2,753,485	-		GFF2730	0.21	-1.4
2,753,485	-		GFF2730	0.21	+0.8
2,753,485	-		GFF2730	0.21	-1.1
2,753,485	-		GFF2730	0.21	-1.0
2,753,485	-		GFF2730	0.21	+0.3
2,753,497	+		GFF2730	0.22	+0.1
2,753,497	+		GFF2730	0.22	+1.4
2,753,503	-		GFF2730	0.23	+0.5
2,753,515	-		GFF2730	0.24	-0.1
2,753,525	-		GFF2730	0.25	-0.7
2,753,547	-		GFF2730	0.27	-1.8
2,753,573	-		GFF2730	0.30	+0.4
2,753,573	-		GFF2730	0.30	-0.7
2,753,593	+		GFF2730	0.31	-0.9
2,753,596	-		GFF2730	0.32	-0.7
2,753,606	-		GFF2730	0.33	+1.2
2,753,614	+		GFF2730	0.33	-0.9
2,753,618	+		GFF2730	0.34	+0.7
2,753,618	+		GFF2730	0.34	-0.2
2,753,670	-		GFF2730	0.39	+0.2
2,753,705	-		GFF2730	0.42	-0.1
2,753,755	-		GFF2730	0.46	-0.0
2,753,798	+		GFF2730	0.50	+0.3
2,753,844	+		GFF2730	0.55	-0.5
2,753,852	+		GFF2730	0.55	-0.9
2,753,860	-		GFF2730	0.56	-1.3
2,753,876	-		GFF2730	0.58	-0.6
2,753,876	-		GFF2730	0.58	-1.4
2,753,906	-		GFF2730	0.61	-1.1
2,753,906	-		GFF2730	0.61	-0.5
2,753,972	-		GFF2730	0.67	-1.3
2,754,014	+		GFF2730	0.71	-0.3
2,754,014	+		GFF2730	0.71	+2.6
2,754,033	+		GFF2730	0.72	+0.1
2,754,054	+		GFF2730	0.74	+0.7
2,754,171	+		GFF2730	0.85	-0.8
2,754,174	-		GFF2730	0.85	-1.2
2,754,176	+		GFF2730	0.86	-0.4
2,754,176	+		GFF2730	0.86	-0.7
2,754,176	+		GFF2730	0.86	+0.7
2,754,176	+		GFF2730	0.86	-0.3
2,754,176	+		GFF2730	0.86	-2.0
2,754,176	+		GFF2730	0.86	-1.4
2,754,179	-		GFF2730	0.86	-0.0
2,754,184	-		GFF2730	0.86	+1.8
2,754,184	-		GFF2730	0.86	-0.7
2,754,184	-		GFF2730	0.86	-1.3
2,754,184	-		GFF2730	0.86	+0.4
2,754,184	-		GFF2730	0.86	-0.9
2,754,184	-		GFF2730	0.86	+1.0
2,754,184	-		GFF2730	0.86	+0.1
2,754,184	-		GFF2730	0.86	-1.9
2,754,184	-		GFF2730	0.86	+0.3
2,754,198	+		GFF2730	0.88	-0.9
2,754,238	-				-0.9
2,754,241	+				-0.6
2,754,249	-				+0.8