Strain Fitness in Sphingobium sp. HT1-2 around GFF2672

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,687,243	+				-0.8
2,687,257	+				-0.6
2,687,257	+				+0.4
2,687,265	-				+1.9
2,687,272	+				+0.9
2,687,272	+				-1.4
2,687,276	+				+1.5
2,687,280	-				-1.3
2,687,303	-				-0.2
2,687,307	+				+0.5
2,687,315	-				-1.2
2,687,320	-				-0.3
2,687,320	-				+0.0
2,687,362	+				+1.3
2,687,371	-				-0.2
2,687,428	+				-1.3
2,687,436	+				-0.2
2,687,444	-				-0.4
2,687,444	-				+0.6
2,687,446	+				-0.1
2,687,446	+				+0.2
2,687,450	+				-0.6
2,687,464	-				-0.6
2,687,466	-				+0.6
2,687,498	-				+0.8
2,687,505	-				-0.3
2,687,511	+				-1.6
2,687,555	+		GFF2671	0.15	-1.3
2,687,561	+		GFF2671	0.16	-1.6
2,687,569	-		GFF2671	0.17	+0.8
2,687,571	+		GFF2671	0.17	-0.7
2,687,571	+		GFF2671	0.17	-0.4
2,687,571	+		GFF2671	0.17	-0.6
2,687,574	-		GFF2671	0.18	+0.4
2,687,579	-		GFF2671	0.18	-0.6
2,687,579	-		GFF2671	0.18	-0.3
2,687,579	-		GFF2671	0.18	+0.5
2,687,579	-		GFF2671	0.18	-0.3
2,687,579	-		GFF2671	0.18	-0.2
2,687,580	+		GFF2671	0.19	+0.2
2,687,601	+		GFF2671	0.22	-1.4
2,687,614	+		GFF2671	0.24	+1.7
2,687,618	+		GFF2671	0.24	-0.4
2,687,621	+		GFF2671	0.25	+0.4
2,687,622	-		GFF2671	0.25	-0.6
2,687,626	+		GFF2671	0.26	+1.5
2,687,626	-		GFF2671	0.26	+1.0
2,687,626	-		GFF2671	0.26	-0.8
2,687,626	-		GFF2671	0.26	+0.8
2,687,654	+		GFF2671	0.30	+1.8
2,687,692	-		GFF2671	0.36	-1.4
2,687,744	-		GFF2671	0.44	-1.5
2,687,748	-		GFF2671	0.45	+0.5
2,687,760	+		GFF2671	0.47	+0.1
2,687,760	+		GFF2671	0.47	-0.9
2,687,763	+		GFF2671	0.47	-0.3
2,687,763	-		GFF2671	0.47	-1.1
2,687,765	+		GFF2671	0.47	+0.7
2,687,768	-		GFF2671	0.48	-0.5
2,687,768	-		GFF2671	0.48	-0.7
2,687,773	-		GFF2671	0.49	-1.6
2,687,779	+		GFF2671	0.49	-0.9
2,687,787	-		GFF2671	0.51	-0.5
2,687,788	+		GFF2671	0.51	-1.1
2,687,796	-		GFF2671	0.52	-0.1
2,687,809	-		GFF2671	0.54	-1.8
2,687,820	+		GFF2671	0.56	-2.3
2,687,820	+		GFF2671	0.56	-1.2
2,687,820	+		GFF2671	0.56	-0.6
2,687,820	+		GFF2671	0.56	+0.2
2,687,828	-		GFF2671	0.57	-1.0
2,687,828	-		GFF2671	0.57	-0.1
2,687,828	-		GFF2671	0.57	-0.4
2,687,828	-		GFF2671	0.57	+0.5
2,687,828	-		GFF2671	0.57	-0.8
2,687,828	-		GFF2671	0.57	-0.4
2,687,828	-		GFF2671	0.57	-1.1
2,687,833	+		GFF2671	0.58	-1.1
2,687,835	+		GFF2671	0.58	-0.8
2,687,835	+		GFF2671	0.58	+1.3
2,687,840	+		GFF2671	0.59	-0.9
2,687,840	+		GFF2671	0.59	-1.4
2,687,840	+		GFF2671	0.59	-0.3
2,687,840	+		GFF2671	0.59	-0.7
2,687,843	-		GFF2671	0.59	-0.5
2,687,843	-		GFF2671	0.59	-1.9
2,687,845	+		GFF2671	0.60	-0.1
2,687,846	-		GFF2671	0.60	-0.0
2,687,848	-		GFF2671	0.60	+0.2
2,687,848	-		GFF2671	0.60	+0.8
2,687,848	-		GFF2671	0.60	-2.1
2,687,850	+		GFF2671	0.60	+0.5
2,687,850	+		GFF2671	0.60	+0.9
2,687,852	+		GFF2671	0.61	+0.2
2,687,865	-		GFF2671	0.63	-0.8
2,687,874	-		GFF2671	0.64	+0.7
2,687,874	-		GFF2671	0.64	-2.2
2,687,886	+		GFF2671	0.66	+1.1
2,687,894	-		GFF2671	0.67	+0.2
2,687,918	+		GFF2671	0.71	-1.4
2,687,941	+		GFF2671	0.75	-1.5
2,687,952	+		GFF2671	0.76	+0.8
2,687,963	+		GFF2671	0.78	-0.7
2,687,971	-		GFF2671	0.79	+1.3
2,687,971	-		GFF2671	0.79	-1.3
2,687,971	-		GFF2671	0.79	-0.4
2,687,973	+		GFF2671	0.80	+0.2
2,687,973	+		GFF2671	0.80	-0.6
2,687,981	-		GFF2671	0.81	+1.5
2,687,981	-		GFF2671	0.81	-1.6
2,687,981	-		GFF2671	0.81	+1.7
2,687,994	+		GFF2671	0.83	-0.8
2,688,010	-		GFF2671	0.85	+0.6
2,688,032	-		GFF2671	0.89	-1.0
2,688,084	+				-0.7
2,688,092	-				-0.1
2,688,093	-				-1.3
2,688,097	-				-1.3
2,688,107	-				+0.5
2,688,107	-				-0.6
2,688,107	-				-0.8
2,688,115	-				-0.6
2,688,118	+				-0.7
2,688,119	+				-0.5
2,688,123	+				+0.3
2,688,126	-				+0.3
2,688,131	-				-1.0
2,688,140	+				+0.3
2,688,140	+				-0.8
2,688,140	+				-0.2
2,688,148	-				+0.1
2,688,148	-				+0.4
2,688,201	-				-0.1
2,688,228	+				-0.4
2,688,231	+				-0.5
2,688,261	+				-0.7
2,688,269	-				+0.6
2,688,269	-				-1.0
2,688,269	-				-0.1
2,688,271	+				+0.1
2,688,284	-				-0.2
2,688,292	+				+0.8
2,688,298	-				+0.5
2,688,300	-				-0.2
2,688,323	-				-1.3
2,688,328	+				-2.3
2,688,333	+				-2.2
2,688,333	+				-2.5
2,688,333	+				+1.6
2,688,333	+				-1.4
2,688,333	+				-1.4
2,688,333	+				+0.4
2,688,333	+				-0.0
2,688,333	+				-1.0
2,688,334	-				+0.7
2,688,336	-				-1.2
2,688,341	-				-1.2
2,688,341	-				+0.9
2,688,341	-				-1.3
2,688,341	-				+0.4
2,688,341	-				-0.3
2,688,344	+				+0.9
2,688,344	+				-0.8
2,688,351	+				-0.1
2,688,351	+				-0.5
2,688,351	+				-1.3
2,688,351	+				-0.6
2,688,351	+				-0.5
2,688,351	+				-0.3
2,688,352	-				-1.3
2,688,352	-				-0.6
2,688,357	-		GFF2672	0.10	+0.3
2,688,359	-		GFF2672	0.10	+0.4
2,688,359	-		GFF2672	0.10	-1.5
2,688,359	-		GFF2672	0.10	-1.7
2,688,359	-		GFF2672	0.10	-1.4
2,688,364	+		GFF2672	0.11	-0.6
2,688,364	+		GFF2672	0.11	+1.7
2,688,364	+		GFF2672	0.11	-0.7
2,688,395	+		GFF2672	0.13	+0.5
2,688,395	+		GFF2672	0.13	-0.5
2,688,395	+		GFF2672	0.13	-1.1
2,688,413	-		GFF2672	0.15	-2.3
2,688,430	+		GFF2672	0.16	+0.0
2,688,430	+		GFF2672	0.16	-0.2
2,688,436	-		GFF2672	0.17	+0.9
2,688,436	-		GFF2672	0.17	-0.9
2,688,438	-		GFF2672	0.17	-0.6
2,688,440	+		GFF2672	0.17	+0.1
2,688,440	+		GFF2672	0.17	-0.6
2,688,440	+		GFF2672	0.17	-0.2
2,688,440	+		GFF2672	0.17	-0.5
2,688,440	+		GFF2672	0.17	-0.6
2,688,440	+		GFF2672	0.17	+0.2
2,688,440	+		GFF2672	0.17	+0.5
2,688,440	+		GFF2672	0.17	-0.4
2,688,440	+		GFF2672	0.17	-1.1
2,688,440	+		GFF2672	0.17	+0.1
2,688,443	-		GFF2672	0.18	-2.4
2,688,443	-		GFF2672	0.18	-2.3
2,688,443	-		GFF2672	0.18	-1.3
2,688,443	-		GFF2672	0.18	+1.3
2,688,448	+		GFF2672	0.18	-0.7
2,688,448	-		GFF2672	0.18	-0.4
2,688,448	-		GFF2672	0.18	-0.5
2,688,448	-		GFF2672	0.18	-2.4
2,688,448	-		GFF2672	0.18	+0.4
2,688,448	-		GFF2672	0.18	-0.5
2,688,448	-		GFF2672	0.18	-1.2
2,688,448	-		GFF2672	0.18	+0.8
2,688,448	-		GFF2672	0.18	-1.2
2,688,448	-		GFF2672	0.18	+0.8
2,688,448	-		GFF2672	0.18	+0.4
2,688,448	-		GFF2672	0.18	+0.1
2,688,448	-		GFF2672	0.18	-1.9
2,688,448	-		GFF2672	0.18	+0.2
2,688,450	+		GFF2672	0.18	-0.1
2,688,458	-		GFF2672	0.19	-0.8
2,688,462	+		GFF2672	0.19	-0.6
2,688,462	+		GFF2672	0.19	+0.1
2,688,463	-		GFF2672	0.19	-0.4
2,688,463	-		GFF2672	0.19	-0.9
2,688,463	-		GFF2672	0.19	-0.5
2,688,463	-		GFF2672	0.19	-0.9
2,688,470	-		GFF2672	0.20	-0.0
2,688,470	-		GFF2672	0.20	+0.7
2,688,470	-		GFF2672	0.20	+0.2
2,688,475	-		GFF2672	0.20	-2.1
2,688,482	-		GFF2672	0.21	-1.5
2,688,502	-		GFF2672	0.22	-0.6
2,688,505	+		GFF2672	0.23	-1.1
2,688,506	+		GFF2672	0.23	-0.6
2,688,506	+		GFF2672	0.23	-1.1
2,688,506	+		GFF2672	0.23	-0.7
2,688,506	+		GFF2672	0.23	-0.2
2,688,506	+		GFF2672	0.23	-1.5
2,688,506	+		GFF2672	0.23	-0.7
2,688,506	+		GFF2672	0.23	-1.1
2,688,511	+		GFF2672	0.23	+1.4
2,688,514	-		GFF2672	0.23	+0.1
2,688,514	-		GFF2672	0.23	+0.4
2,688,514	-		GFF2672	0.23	+1.3
2,688,514	-		GFF2672	0.23	+1.0
2,688,514	-		GFF2672	0.23	+0.1
2,688,514	-		GFF2672	0.23	-2.1
2,688,514	-		GFF2672	0.23	-1.8
2,688,518	+		GFF2672	0.24	-1.1
2,688,518	+		GFF2672	0.24	-2.1
2,688,518	+		GFF2672	0.24	-0.5
2,688,518	+		GFF2672	0.24	-1.4
2,688,526	-		GFF2672	0.24	+0.0
2,688,526	-		GFF2672	0.24	+0.4
2,688,526	-		GFF2672	0.24	-0.3
2,688,526	-		GFF2672	0.24	-0.8
2,688,526	-		GFF2672	0.24	-0.6
2,688,526	-		GFF2672	0.24	-0.8
2,688,539	+		GFF2672	0.26	-1.1
2,688,545	+		GFF2672	0.26	-0.3
2,688,565	+		GFF2672	0.28	-0.6
2,688,565	+		GFF2672	0.28	+0.4
2,688,565	+		GFF2672	0.28	-0.3
2,688,565	+		GFF2672	0.28	+0.0
2,688,565	+		GFF2672	0.28	-1.8
2,688,573	-		GFF2672	0.28	-0.1
2,688,573	-		GFF2672	0.28	+0.8
2,688,573	-		GFF2672	0.28	-1.5
2,688,573	-		GFF2672	0.28	-0.2
2,688,573	-		GFF2672	0.28	+0.5
2,688,582	+		GFF2672	0.29	-0.3
2,688,582	-		GFF2672	0.29	-1.5
2,688,597	-		GFF2672	0.30	-0.5
2,688,616	+		GFF2672	0.32	-2.0
2,688,619	-		GFF2672	0.32	-0.2
2,688,653	+		GFF2672	0.35	+0.8
2,688,678	+		GFF2672	0.37	-1.0
2,688,686	-		GFF2672	0.38	-0.0
2,688,687	+		GFF2672	0.38	-2.5
2,688,694	+		GFF2672	0.39	-0.5
2,688,694	+		GFF2672	0.39	-1.0
2,688,732	-		GFF2672	0.42	-0.4
2,688,769	-		GFF2672	0.45	-0.3
2,688,787	+		GFF2672	0.46	-1.2
2,688,795	-		GFF2672	0.47	+0.5
2,688,807	-		GFF2672	0.48	+0.2
2,688,819	+		GFF2672	0.49	+0.3
2,688,834	+		GFF2672	0.50	-0.2
2,688,834	+		GFF2672	0.50	-0.7
2,688,849	+		GFF2672	0.52	+1.3
2,688,851	+		GFF2672	0.52	-1.2
2,688,851	+		GFF2672	0.52	-1.1
2,688,851	+		GFF2672	0.52	+1.3
2,688,857	-		GFF2672	0.52	-0.3
2,688,859	-		GFF2672	0.52	+0.8
2,688,859	-		GFF2672	0.52	-1.1
2,688,859	-		GFF2672	0.52	-1.4
2,688,859	-		GFF2672	0.52	+0.8
2,688,859	-		GFF2672	0.52	+0.2
2,688,861	+		GFF2672	0.53	+1.0
2,688,861	+		GFF2672	0.53	+0.7
2,688,861	+		GFF2672	0.53	+0.3
2,688,861	+		GFF2672	0.53	-2.3
2,688,868	+		GFF2672	0.53	+0.7
2,688,869	-		GFF2672	0.53	+0.3
2,688,869	-		GFF2672	0.53	-1.2
2,688,874	-		GFF2672	0.54	-2.3
2,688,878	+		GFF2672	0.54	-0.6
2,688,878	+		GFF2672	0.54	-1.4
2,688,878	+		GFF2672	0.54	+0.1
2,688,886	-		GFF2672	0.55	-0.9
2,688,886	-		GFF2672	0.55	-1.0
2,688,886	-		GFF2672	0.55	-0.3
2,688,886	-		GFF2672	0.55	-0.9
2,688,886	-		GFF2672	0.55	-1.0
2,688,889	+		GFF2672	0.55	-0.7
2,688,889	+		GFF2672	0.55	-2.1
2,688,924	-		GFF2672	0.58	+0.0
2,688,927	+		GFF2672	0.58	+0.0
2,688,945	+		GFF2672	0.60	-2.3
2,688,945	+		GFF2672	0.60	+0.5
2,688,945	+		GFF2672	0.60	-0.2
2,688,945	+		GFF2672	0.60	-0.4
2,688,945	+		GFF2672	0.60	-2.2
2,688,945	+		GFF2672	0.60	-1.3
2,688,945	+		GFF2672	0.60	-2.5
2,688,945	+		GFF2672	0.60	-0.5
2,688,945	+		GFF2672	0.60	+2.0
2,688,945	+		GFF2672	0.60	-0.5
2,688,945	+		GFF2672	0.60	-1.1
2,688,945	+		GFF2672	0.60	-0.8
2,688,945	+		GFF2672	0.60	-0.2
2,688,945	+		GFF2672	0.60	-0.8
2,688,945	+		GFF2672	0.60	+0.8
2,688,945	+		GFF2672	0.60	-0.2
2,688,945	+		GFF2672	0.60	-1.0
2,688,945	+		GFF2672	0.60	-1.2
2,688,945	+		GFF2672	0.60	-1.0
2,688,951	+		GFF2672	0.60	-2.0
2,688,953	-		GFF2672	0.60	+0.7
2,688,953	-		GFF2672	0.60	-1.4
2,688,953	-		GFF2672	0.60	-2.2
2,688,953	-		GFF2672	0.60	-0.8
2,688,953	-		GFF2672	0.60	+0.2
2,688,953	-		GFF2672	0.60	-1.1
2,688,953	-		GFF2672	0.60	+0.0
2,688,953	-		GFF2672	0.60	+0.0
2,688,953	-		GFF2672	0.60	-1.1
2,688,953	-		GFF2672	0.60	+0.9
2,688,953	-		GFF2672	0.60	+1.6
2,688,953	-		GFF2672	0.60	+0.0
2,688,953	-		GFF2672	0.60	+0.6
2,688,953	-		GFF2672	0.60	-0.9
2,688,953	-		GFF2672	0.60	+0.3
2,688,953	-		GFF2672	0.60	-2.0
2,688,955	+		GFF2672	0.60	-0.5
2,688,955	+		GFF2672	0.60	-0.4
2,688,963	-		GFF2672	0.61	-1.0
2,688,970	+		GFF2672	0.62	-0.9
2,688,985	-		GFF2672	0.63	-2.0
2,688,985	-		GFF2672	0.63	-1.1
2,688,985	-		GFF2672	0.63	-0.2
2,689,047	+		GFF2672	0.68	-1.1
2,689,084	+		GFF2672	0.71	+0.3
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2,689,349	-				+1.5
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2,689,483	-				-1.9
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2,689,599	-				-0.4
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