Strain Fitness in Sphingobium sp. HT1-2 around GFF2570

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,584,774	-		GFF2568	0.71	+0.3
2,584,784	-		GFF2568	0.72	+0.5
2,584,802	-		GFF2568	0.74	+0.5
2,584,820	+		GFF2568	0.76	-0.3
2,584,820	+		GFF2568	0.76	-0.1
2,584,820	+		GFF2568	0.76	-1.6
2,584,820	+		GFF2568	0.76	+0.3
2,584,838	-		GFF2568	0.78	-0.8
2,584,861	-		GFF2568	0.81	-0.9
2,584,866	-		GFF2568	0.81	+1.5
2,584,866	-		GFF2568	0.81	-1.4
2,584,888	+		GFF2568	0.84	+0.5
2,584,888	+		GFF2568	0.84	-0.2
2,584,893	+		GFF2568	0.84	+0.6
2,584,914	-		GFF2568	0.86	-0.0
2,584,936	-		GFF2568	0.89	+0.8
2,584,946	-				+0.7
2,584,946	-				-1.0
2,584,963	+				+0.5
2,584,969	-				-1.8
2,584,979	-				-1.1
2,585,012	+				-0.2
2,585,015	-				+0.4
2,585,020	-				-0.4
2,585,020	-				-1.3
2,585,039	-				-0.1
2,585,053	+				-0.4
2,585,053	+				-1.0
2,585,053	+				+1.0
2,585,063	+				-0.5
2,585,063	+				-1.0
2,585,063	+				-0.7
2,585,063	+				-1.4
2,585,063	+				+0.1
2,585,063	+				-0.3
2,585,063	+				-0.9
2,585,068	+				-0.9
2,585,071	-				-2.2
2,585,071	-				-1.0
2,585,071	-				-0.2
2,585,071	-				-1.1
2,585,071	-				+0.4
2,585,071	-				-0.8
2,585,071	-				-0.6
2,585,074	+				+1.1
2,585,074	+				-1.5
2,585,082	-				+0.8
2,585,086	+				+0.3
2,585,086	+				+0.0
2,585,086	+				-0.8
2,585,086	+				+0.3
2,585,086	+				+0.8
2,585,086	+				+0.5
2,585,086	+				-0.1
2,585,086	+				+1.0
2,585,086	+				-0.6
2,585,086	+				-0.2
2,585,086	+				-1.1
2,585,091	+				+0.2
2,585,094	-		GFF2569	0.10	-1.7
2,585,094	-		GFF2569	0.10	-0.3
2,585,094	-		GFF2569	0.10	+0.1
2,585,094	-		GFF2569	0.10	-0.7
2,585,094	-		GFF2569	0.10	-0.9
2,585,094	-		GFF2569	0.10	-0.1
2,585,094	-		GFF2569	0.10	-2.4
2,585,094	-		GFF2569	0.10	-1.3
2,585,097	-		GFF2569	0.11	+1.0
2,585,107	+		GFF2569	0.13	-0.4
2,585,107	+		GFF2569	0.13	-0.8
2,585,107	+		GFF2569	0.13	+0.0
2,585,109	+		GFF2569	0.13	-0.7
2,585,128	+		GFF2569	0.16	-0.1
2,585,152	+		GFF2569	0.20	-0.3
2,585,154	+		GFF2569	0.21	-0.4
2,585,157	+		GFF2569	0.21	-1.4
2,585,165	-		GFF2569	0.23	+1.3
2,585,189	-		GFF2569	0.27	-1.6
2,585,190	+		GFF2569	0.27	-0.2
2,585,193	+		GFF2569	0.28	-0.4
2,585,201	-		GFF2569	0.29	-0.8
2,585,216	-		GFF2569	0.32	-0.9
2,585,221	+		GFF2569	0.32	-0.9
2,585,235	-		GFF2569	0.35	-0.0
2,585,261	+		GFF2569	0.39	+0.7
2,585,269	-		GFF2569	0.41	-0.2
2,585,302	-		GFF2569	0.47	-0.3
2,585,307	+		GFF2569	0.47	-0.1
2,585,307	-		GFF2569	0.47	-0.0
2,585,307	-		GFF2569	0.47	-1.0
2,585,315	-		GFF2569	0.49	+0.7
2,585,315	-		GFF2569	0.49	+0.8
2,585,318	+		GFF2569	0.49	-0.0
2,585,359	+		GFF2569	0.56	-1.6
2,585,359	+		GFF2569	0.56	-1.5
2,585,359	+		GFF2569	0.56	-0.8
2,585,359	+		GFF2569	0.56	-0.2
2,585,367	-		GFF2569	0.58	-2.2
2,585,367	-		GFF2569	0.58	-0.3
2,585,367	-		GFF2569	0.58	-0.4
2,585,391	-		GFF2569	0.62	+0.5
2,585,393	+		GFF2569	0.62	+0.2
2,585,393	-		GFF2569	0.62	-0.8
2,585,394	+		GFF2569	0.62	-0.4
2,585,394	+		GFF2569	0.62	-0.2
2,585,394	+		GFF2569	0.62	+0.1
2,585,395	+		GFF2569	0.63	-0.1
2,585,395	+		GFF2569	0.63	-0.6
2,585,400	+		GFF2569	0.64	+1.4
2,585,400	+		GFF2569	0.64	-1.3
2,585,401	-		GFF2569	0.64	-1.2
2,585,402	-		GFF2569	0.64	-2.3
2,585,402	-		GFF2569	0.64	+1.1
2,585,402	-		GFF2569	0.64	-0.3
2,585,403	-		GFF2569	0.64	-0.1
2,585,403	-		GFF2569	0.64	-2.3
2,585,403	-		GFF2569	0.64	+0.3
2,585,414	+		GFF2569	0.66	-1.9
2,585,414	+		GFF2569	0.66	+1.0
2,585,414	+		GFF2569	0.66	-0.7
2,585,414	-		GFF2569	0.66	+0.5
2,585,420	+		GFF2569	0.67	-0.5
2,585,420	+		GFF2569	0.67	+0.6
2,585,422	-		GFF2569	0.67	-0.2
2,585,422	-		GFF2569	0.67	-0.3
2,585,423	-		GFF2569	0.68	-0.6
2,585,439	+		GFF2569	0.70	-0.9
2,585,447	-		GFF2569	0.72	-0.7
2,585,447	-		GFF2569	0.72	-1.0
2,585,447	-		GFF2569	0.72	-1.9
2,585,449	+		GFF2569	0.72	-1.5
2,585,474	+		GFF2569	0.76	-0.5
2,585,484	+		GFF2569	0.78	-1.8
2,585,494	-		GFF2569	0.80	-0.7
2,585,494	-		GFF2569	0.80	-0.4
2,585,538	-		GFF2569	0.88	-0.6
2,585,551	+		GFF2569	0.90	-1.2
2,585,551	+		GFF2569	0.90	-0.5
2,585,551	+		GFF2569	0.90	+0.7
2,585,551	+		GFF2569	0.90	+0.8
2,585,551	+		GFF2569	0.90	-0.2
2,585,559	-				+0.5
2,585,559	-				-0.5
2,585,559	-				-1.1
2,585,559	-				-1.1
2,585,559	-				+0.3
2,585,573	-				+0.8
2,585,598	+				-0.1
2,585,606	-				-0.4
2,585,617	+				-2.6
2,585,634	-				-0.3
2,585,641	+				-1.3
2,585,649	-				+0.1
2,585,656	-				-0.9
2,585,663	+				-0.4
2,585,663	+				+0.5
2,585,666	-				+0.3
2,585,666	-				-0.2
2,585,671	-				-1.9
2,585,671	-				+0.6
2,585,671	-				+0.8
2,585,671	-				+0.2
2,585,674	-				+0.7
2,585,696	+				-1.0
2,585,712	+				-1.3
2,585,753	+				+0.2
2,585,753	+				+0.5
2,585,761	-				-0.7
2,585,761	-				-1.0
2,585,761	-				+0.3
2,585,761	-				-1.6
2,585,761	-				+1.0
2,585,769	+				+0.5
2,585,777	-				-0.5
2,585,854	-				-1.2
2,585,922	-		GFF2570	0.10	-1.3
2,585,944	+		GFF2570	0.12	+1.1
2,585,944	+		GFF2570	0.12	-0.8
2,585,944	+		GFF2570	0.12	-1.5
2,585,944	+		GFF2570	0.12	-1.5
2,585,944	+		GFF2570	0.12	-1.1
2,585,944	+		GFF2570	0.12	-0.2
2,585,949	+		GFF2570	0.12	-0.7
2,585,949	+		GFF2570	0.12	-1.4
2,585,952	-		GFF2570	0.13	+0.6
2,585,952	-		GFF2570	0.13	-1.9
2,585,952	-		GFF2570	0.13	-0.3
2,585,952	-		GFF2570	0.13	-1.5
2,585,957	-		GFF2570	0.13	+1.0
2,585,962	+		GFF2570	0.13	+1.0
2,585,977	+		GFF2570	0.14	-1.8
2,585,977	+		GFF2570	0.14	+0.2
2,585,983	+		GFF2570	0.15	-1.6
2,585,985	-		GFF2570	0.15	-2.0
2,585,991	-		GFF2570	0.15	-1.6
2,585,991	-		GFF2570	0.15	+0.4
2,585,991	-		GFF2570	0.15	-0.0
2,586,011	+		GFF2570	0.17	-0.4
2,586,016	+		GFF2570	0.17	-0.6
2,586,019	-		GFF2570	0.17	-0.8
2,586,024	-		GFF2570	0.18	-0.2
2,586,030	+		GFF2570	0.18	-0.3
2,586,045	+		GFF2570	0.19	-0.4
2,586,053	-		GFF2570	0.20	+0.2
2,586,053	-		GFF2570	0.20	-1.5
2,586,061	+		GFF2570	0.20	-1.5
2,586,079	-		GFF2570	0.22	-0.0
2,586,102	-		GFF2570	0.23	-0.0
2,586,125	+		GFF2570	0.25	+1.1
2,586,159	-		GFF2570	0.27	-0.5
2,586,288	+		GFF2570	0.36	-0.5
2,586,296	+		GFF2570	0.37	-0.2
2,586,302	+		GFF2570	0.37	+1.7
2,586,302	+		GFF2570	0.37	-0.5
2,586,302	+		GFF2570	0.37	-1.8
2,586,304	-		GFF2570	0.37	-0.3
2,586,310	-		GFF2570	0.38	-1.6
2,586,348	+		GFF2570	0.40	-0.3
2,586,362	+		GFF2570	0.41	-0.3
2,586,418	-		GFF2570	0.45	+1.4
2,586,435	-		GFF2570	0.47	+0.1
2,586,447	+		GFF2570	0.47	-0.0
2,586,456	-		GFF2570	0.48	-0.9
2,586,475	+		GFF2570	0.49	-0.3
2,586,511	+		GFF2570	0.52	-1.4
2,586,532	-		GFF2570	0.53	-0.4
2,586,539	+		GFF2570	0.54	-0.3
2,586,563	+		GFF2570	0.56	-1.0
2,586,596	+		GFF2570	0.58	-1.1
2,586,628	+		GFF2570	0.60	-0.8
2,586,630	-		GFF2570	0.60	-1.1
2,586,633	+		GFF2570	0.60	+0.8
2,586,633	+		GFF2570	0.60	+0.3
2,586,633	+		GFF2570	0.60	-1.7
2,586,633	+		GFF2570	0.60	-1.0
2,586,641	-		GFF2570	0.61	-0.4
2,586,641	-		GFF2570	0.61	-0.2
2,586,659	+		GFF2570	0.62	-1.3
2,586,661	-		GFF2570	0.62	-1.3
2,586,664	+		GFF2570	0.63	-0.2
2,586,671	+		GFF2570	0.63	+0.3
2,586,712	-		GFF2570	0.66	+0.8
2,586,714	+		GFF2570	0.66	+0.8
2,586,755	+		GFF2570	0.69	-0.3
2,586,763	-		GFF2570	0.70	-0.3
2,586,772	+		GFF2570	0.70	+0.6
2,586,780	-		GFF2570	0.71	-0.6
2,586,786	+		GFF2570	0.71	-1.4
2,586,794	-		GFF2570	0.72	-0.5
2,586,799	+		GFF2570	0.72	-1.3
2,586,834	+		GFF2570	0.75	+0.0
2,586,841	-		GFF2570	0.75	+1.9
2,586,848	+		GFF2570	0.76	-0.6
2,586,856	-		GFF2570	0.76	-0.2
2,586,887	+		GFF2570	0.78	+0.2
2,586,892	+		GFF2570	0.79	-2.2
2,586,895	-		GFF2570	0.79	-1.0
2,586,913	-		GFF2570	0.80	-0.7
2,586,925	+		GFF2570	0.81	-1.7
2,586,927	+		GFF2570	0.81	-0.2
2,586,927	+		GFF2570	0.81	-0.2
2,586,927	+		GFF2570	0.81	-0.6
2,586,952	+		GFF2570	0.83	-1.0
2,586,970	+		GFF2570	0.84	-1.0
2,586,983	+		GFF2570	0.85	-0.5
2,586,993	+		GFF2570	0.86	+1.4
2,587,003	+		GFF2570	0.86	-1.5
2,587,022	+		GFF2570	0.88	-0.5
2,587,022	+		GFF2570	0.88	+0.5
2,587,022	+		GFF2570	0.88	+0.9
2,587,022	+		GFF2570	0.88	-0.5
2,587,022	+		GFF2570	0.88	-0.7
2,587,022	+		GFF2570	0.88	-0.7
2,587,022	+		GFF2570	0.88	+0.8
2,587,029	+		GFF2570	0.88	-0.3
2,587,030	-		GFF2570	0.88	-0.2
2,587,030	-		GFF2570	0.88	-0.8
2,587,030	-		GFF2570	0.88	+1.0
2,587,043	-		GFF2570	0.89	-1.5
2,587,043	-		GFF2570	0.89	-1.3
2,587,043	-		GFF2570	0.89	-1.9
2,587,043	-		GFF2570	0.89	-0.4
2,587,045	+		GFF2570	0.89	-0.2
2,587,053	-				-0.4
2,587,068	+				-0.5
2,587,068	+				+0.5
2,587,068	+				-1.2
2,587,068	+				-0.4
2,587,068	+				-0.2
2,587,068	+				+0.9
2,587,076	-				+1.0
2,587,076	-				-0.6
2,587,076	-				-1.4
2,587,076	-				-0.1
2,587,078	+				+0.5
2,587,078	+				+0.0
2,587,099	+				+0.6
2,587,106	+				+0.3
2,587,106	+				-1.2
2,587,106	+				-0.5
2,587,106	+				-1.0
2,587,106	+				-1.4
2,587,106	+				-1.3
2,587,106	+				-1.3
2,587,106	+				+0.3
2,587,106	+				-1.0
2,587,114	-				-1.2
2,587,114	-				-1.0
2,587,114	-				-1.8
2,587,114	-				-0.1
2,587,123	+				-1.1
2,587,127	+				-0.2
2,587,127	+				-2.3
2,587,127	+				+0.5
2,587,127	+				-0.4
2,587,127	+				+0.4
2,587,131	-				-1.1
2,587,131	-				+1.2
2,587,131	-				-0.7
2,587,131	-				-1.9
2,587,135	-				+0.2
2,587,135	-				-0.5
2,587,135	-				+0.4
2,587,141	+				+0.5
2,587,146	+				-0.7
2,587,146	+				+0.2
2,587,146	+				-0.3
2,587,146	+				+0.3
2,587,146	+				-2.1
2,587,152	-				-0.1
2,587,152	-				-0.8
2,587,154	-				-1.2
2,587,159	-				-1.0
2,587,172	+				+1.4
2,587,173	-				+0.0
2,587,180	-				+2.3
2,587,180	-				-0.0
2,587,183	+				+0.0
2,587,183	+				+0.2
2,587,191	-				-1.7
2,587,191	-				-0.9
2,587,195	+				-0.5
2,587,195	+				-1.2
2,587,195	+				-0.4
2,587,195	+				+0.3
2,587,195	+				-0.4
2,587,195	+				-0.4
2,587,195	+				+1.3
2,587,195	+				-0.5
2,587,195	+				-1.0
2,587,195	+				-0.1
2,587,195	+				-0.4
2,587,195	+				-0.9
2,587,195	+				+0.1
2,587,203	-				+0.2
2,587,203	-				+0.0
2,587,203	-				+1.1
2,587,203	-				-1.1
2,587,203	-				-0.3
2,587,203	-				+0.2
2,587,205	+				-1.7
2,587,210	-				-0.7
2,587,215	-				-1.0
2,587,239	+				-1.7
2,587,260	-				+0.5
2,587,282	-		GFF2571	0.13	+0.1
2,587,306	+		GFF2571	0.17	-1.3
2,587,314	-		GFF2571	0.18	-0.6
2,587,331	-		GFF2571	0.21	-0.3
2,587,335	+		GFF2571	0.21	-0.8
2,587,344	+		GFF2571	0.23	+0.3
2,587,344	+		GFF2571	0.23	-1.1
2,587,357	+		GFF2571	0.25	-0.2
2,587,363	+		GFF2571	0.26	-0.1
2,587,365	-		GFF2571	0.26	-0.8
2,587,371	-		GFF2571	0.27	-0.8
2,587,376	+		GFF2571	0.28	-0.9
2,587,387	+		GFF2571	0.29	-0.2
2,587,394	+		GFF2571	0.31	+0.5
2,587,394	+		GFF2571	0.31	+0.3
2,587,394	+		GFF2571	0.31	+1.8
2,587,394	+		GFF2571	0.31	-0.5
2,587,394	+		GFF2571	0.31	-0.4
2,587,394	+		GFF2571	0.31	+0.7
2,587,394	+		GFF2571	0.31	+0.3
2,587,394	+		GFF2571	0.31	-0.3
2,587,395	+		GFF2571	0.31	-1.2
2,587,395	-		GFF2571	0.31	-1.6
2,587,400	+		GFF2571	0.31	-0.8
2,587,400	+		GFF2571	0.31	-0.4
2,587,400	+		GFF2571	0.31	-0.2
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2,587,776	+				+1.2
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2,587,786	+				-1.9
2,587,786	+				-1.2
2,587,797	+				-0.5
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2,587,805	-				+0.8
2,587,816	+				-1.7
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2,587,846	+				+0.8
2,587,856	+				+0.8
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2,587,865	-				-0.4
2,587,865	-				-1.8
2,587,871	-				-0.5
2,587,873	+				-0.5
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2,587,920	+				+1.6
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2,587,923	-				-0.8
2,587,951	-				-1.6
2,587,959	+				+0.5
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2,587,969	+				-0.6
2,587,975	-				-2.0
2,587,975	-				-0.1
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