Strain Fitness in Sphingobium sp. HT1-2 around GFF2565

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,580,201	+				+0.3
2,580,201	+				-0.1
2,580,201	+				-1.1
2,580,201	+				+0.8
2,580,201	+				+1.2
2,580,201	+				-0.9
2,580,201	+				+0.6
2,580,201	+				-1.1
2,580,209	-				-0.2
2,580,209	-				-0.2
2,580,209	-				-1.8
2,580,209	-				-0.6
2,580,209	-				-1.1
2,580,209	-				-0.1
2,580,209	-				-1.0
2,580,209	-				-1.4
2,580,233	+				-0.6
2,580,243	+				-0.4
2,580,248	+		GFF2564	0.10	-0.3
2,580,256	-		GFF2564	0.11	-1.4
2,580,256	-		GFF2564	0.11	+0.6
2,580,256	-		GFF2564	0.11	+0.9
2,580,256	-		GFF2564	0.11	+0.3
2,580,301	-		GFF2564	0.16	-0.8
2,580,319	+		GFF2564	0.18	+2.3
2,580,322	+		GFF2564	0.19	+0.1
2,580,328	+		GFF2564	0.19	+0.9
2,580,332	+		GFF2564	0.20	-1.7
2,580,332	+		GFF2564	0.20	-1.1
2,580,332	+		GFF2564	0.20	+0.2
2,580,351	+		GFF2564	0.22	-0.1
2,580,359	-		GFF2564	0.23	-0.2
2,580,378	-		GFF2564	0.25	-0.4
2,580,406	+		GFF2564	0.28	-1.4
2,580,414	-		GFF2564	0.29	+1.0
2,580,421	+		GFF2564	0.30	-0.2
2,580,421	+		GFF2564	0.30	-0.7
2,580,421	+		GFF2564	0.30	+0.7
2,580,421	+		GFF2564	0.30	-1.3
2,580,421	+		GFF2564	0.30	+0.8
2,580,421	+		GFF2564	0.30	-2.8
2,580,421	+		GFF2564	0.30	+0.1
2,580,421	+		GFF2564	0.30	+1.6
2,580,421	+		GFF2564	0.30	+0.3
2,580,429	-		GFF2564	0.31	-0.2
2,580,429	-		GFF2564	0.31	+0.3
2,580,429	-		GFF2564	0.31	-0.7
2,580,429	-		GFF2564	0.31	-0.1
2,580,429	-		GFF2564	0.31	+1.0
2,580,429	-		GFF2564	0.31	-0.1
2,580,429	-		GFF2564	0.31	+0.3
2,580,434	-		GFF2564	0.31	+2.1
2,580,435	-		GFF2564	0.31	-0.1
2,580,452	+		GFF2564	0.33	-1.3
2,580,463	+		GFF2564	0.34	+0.9
2,580,463	+		GFF2564	0.34	+1.4
2,580,465	-		GFF2564	0.35	+0.2
2,580,488	-		GFF2564	0.37	+0.1
2,580,500	+		GFF2564	0.39	-1.0
2,580,506	+		GFF2564	0.39	+1.3
2,580,520	+		GFF2564	0.41	-0.1
2,580,520	+		GFF2564	0.41	-0.7
2,580,520	+		GFF2564	0.41	+0.2
2,580,525	+		GFF2564	0.41	-2.1
2,580,528	-		GFF2564	0.42	+0.9
2,580,533	-		GFF2564	0.42	-1.2
2,580,588	+		GFF2564	0.48	-1.7
2,580,597	-		GFF2564	0.49	-0.6
2,580,628	+		GFF2564	0.53	-1.2
2,580,643	+		GFF2564	0.55	-1.1
2,580,651	-		GFF2564	0.56	+0.8
2,580,658	+		GFF2564	0.56	-1.1
2,580,658	+		GFF2564	0.56	-0.6
2,580,666	-		GFF2564	0.57	+1.8
2,580,668	+		GFF2564	0.57	-0.6
2,580,668	+		GFF2564	0.57	-0.3
2,580,681	-		GFF2564	0.59	-0.7
2,580,687	+		GFF2564	0.60	+0.9
2,580,707	-		GFF2564	0.62	+0.1
2,580,720	+		GFF2564	0.63	+1.3
2,580,720	+		GFF2564	0.63	+0.1
2,580,727	+		GFF2564	0.64	+1.6
2,580,727	+		GFF2564	0.64	+0.1
2,580,727	+		GFF2564	0.64	+0.0
2,580,735	-		GFF2564	0.65	+1.0
2,580,735	-		GFF2564	0.65	+0.2
2,580,742	+		GFF2564	0.66	-0.2
2,580,771	-		GFF2564	0.69	+0.5
2,580,802	-		GFF2564	0.73	-1.0
2,580,816	+		GFF2564	0.74	+0.2
2,580,819	+		GFF2564	0.74	+1.6
2,580,831	+		GFF2564	0.76	+1.2
2,580,839	-		GFF2564	0.77	-1.2
2,580,839	-		GFF2564	0.77	-0.9
2,580,876	+		GFF2564	0.81	+0.1
2,580,894	+		GFF2564	0.83	-0.2
2,580,902	-		GFF2564	0.84	+1.3
2,580,961	-				+1.5
2,581,007	-				+0.3
2,581,033	+				+0.7
2,581,045	+				-1.1
2,581,053	-				+0.6
2,581,053	-				+0.3
2,581,077	+				-1.4
2,581,080	+				-0.6
2,581,085	-				+0.9
2,581,121	+				-0.7
2,581,121	-				-1.2
2,581,138	-				-0.3
2,581,190	-				-0.9
2,581,208	+				+0.4
2,581,241	+				+0.8
2,581,243	+				+1.2
2,581,249	-				-1.3
2,581,250	-				-0.1
2,581,296	+				+0.1
2,581,298	-				+0.9
2,581,304	-				+1.9
2,581,308	-				+0.6
2,581,308	-				+0.5
2,581,319	-		GFF2565	0.10	-1.2
2,581,338	+		GFF2565	0.12	+1.3
2,581,341	-		GFF2565	0.12	-0.1
2,581,419	+		GFF2565	0.19	-1.5
2,581,427	-		GFF2565	0.19	+1.2
2,581,427	-		GFF2565	0.19	-0.9
2,581,451	+		GFF2565	0.21	-0.9
2,581,470	+		GFF2565	0.23	-0.5
2,581,470	+		GFF2565	0.23	-1.1
2,581,490	+		GFF2565	0.25	-0.7
2,581,578	-		GFF2565	0.32	-0.5
2,581,578	-		GFF2565	0.32	-0.1
2,581,642	-		GFF2565	0.38	-2.3
2,581,642	-		GFF2565	0.38	+0.4
2,581,647	+		GFF2565	0.38	-0.1
2,581,655	-		GFF2565	0.39	-1.1
2,581,657	-		GFF2565	0.39	-0.5
2,581,673	-		GFF2565	0.40	+0.6
2,581,747	-		GFF2565	0.46	-0.3
2,581,757	-		GFF2565	0.47	-1.9
2,581,790	+		GFF2565	0.50	-0.8
2,581,822	+		GFF2565	0.53	+0.0
2,581,826	-		GFF2565	0.53	-0.3
2,581,833	+		GFF2565	0.54	+1.1
2,581,837	-		GFF2565	0.54	-2.0
2,581,838	+		GFF2565	0.54	-1.4
2,581,848	+		GFF2565	0.55	-0.9
2,581,848	+		GFF2565	0.55	+0.6
2,581,856	-		GFF2565	0.56	-0.2
2,581,856	-		GFF2565	0.56	-0.8
2,581,868	+		GFF2565	0.57	-0.4
2,581,887	+		GFF2565	0.58	-0.7
2,581,895	-		GFF2565	0.59	+0.5
2,581,939	-		GFF2565	0.63	+0.8
2,582,000	+		GFF2565	0.68	+0.1
2,582,011	-		GFF2565	0.69	+2.0
2,582,016	+		GFF2565	0.69	-0.4
2,582,088	-		GFF2565	0.75	-1.1
2,582,102	+		GFF2565	0.77	+0.5
2,582,107	+		GFF2565	0.77	+0.6
2,582,108	-		GFF2565	0.77	-0.3
2,582,110	-		GFF2565	0.77	+1.0
2,582,110	-		GFF2565	0.77	-0.2
2,582,110	-		GFF2565	0.77	-1.7
2,582,110	-		GFF2565	0.77	+0.4
2,582,120	-		GFF2565	0.78	-1.3
2,582,121	+		GFF2565	0.78	+1.0
2,582,121	+		GFF2565	0.78	+1.3
2,582,129	-		GFF2565	0.79	+0.6
2,582,129	-		GFF2565	0.79	+0.8
2,582,155	+		GFF2565	0.81	-0.7
2,582,211	-		GFF2565	0.86	-0.2
2,582,281	+				-0.8
2,582,284	-				-1.7
2,582,354	-				-0.7
2,582,376	+				+1.5
2,582,381	+				-1.1
2,582,392	+				+0.2
2,582,396	+				+0.7
2,582,400	-				+1.0
2,582,404	-				-1.5
2,582,445	-				-0.3
2,582,449	-				-0.4
2,582,473	+		GFF2566	0.12	+0.3
2,582,533	-		GFF2566	0.20	-0.7
2,582,533	-		GFF2566	0.20	+1.8
2,582,539	-		GFF2566	0.21	-0.5
2,582,541	-		GFF2566	0.21	-0.8
2,582,564	+		GFF2566	0.24	-1.2
2,582,564	+		GFF2566	0.24	+0.3
2,582,564	-		GFF2566	0.24	+1.0
2,582,572	-		GFF2566	0.25	-0.7
2,582,574	+		GFF2566	0.25	-0.1
2,582,574	+		GFF2566	0.25	+0.0
2,582,574	+		GFF2566	0.25	+0.0
2,582,574	+		GFF2566	0.25	-0.2
2,582,574	+		GFF2566	0.25	+1.1
2,582,577	-		GFF2566	0.26	+0.6
2,582,579	+		GFF2566	0.26	+2.2
2,582,579	+		GFF2566	0.26	-2.4
2,582,582	-		GFF2566	0.26	-0.5
2,582,582	-		GFF2566	0.26	-0.0
2,582,582	-		GFF2566	0.26	-1.2
2,582,587	-		GFF2566	0.27	-0.5
2,582,620	+		GFF2566	0.31	-0.4
2,582,628	-		GFF2566	0.32	-2.0
2,582,724	+		GFF2566	0.44	-0.1
2,582,732	-		GFF2566	0.45	+0.6
2,582,742	-		GFF2566	0.46	-0.6
2,582,752	-		GFF2566	0.48	+0.2
2,582,781	-		GFF2566	0.51	+0.1
2,582,789	+		GFF2566	0.52	+0.3
2,582,804	+		GFF2566	0.54	-0.2
2,582,830	+		GFF2566	0.58	-0.3
2,582,838	-		GFF2566	0.59	-0.9
2,582,840	-		GFF2566	0.59	-1.9
2,582,840	-		GFF2566	0.59	-1.4
2,582,840	-		GFF2566	0.59	-1.0
2,582,863	+		GFF2566	0.62	+0.5
2,582,886	-		GFF2566	0.65	+0.0
2,582,906	+		GFF2566	0.67	+0.6
2,582,943	+		GFF2566	0.72	+0.0
2,582,944	+		GFF2566	0.72	+0.6
2,582,944	+		GFF2566	0.72	+0.6
2,582,947	-		GFF2566	0.72	+0.8
2,582,952	-		GFF2566	0.73	-1.4
2,582,952	-		GFF2566	0.73	-0.3
2,582,994	+		GFF2566	0.78	+0.6
2,583,012	+		GFF2566	0.81	+0.1
2,583,020	-		GFF2566	0.82	+0.3
2,583,021	-		GFF2566	0.82	+0.3
2,583,023	-		GFF2566	0.82	-1.6
2,583,038	-		GFF2566	0.84	+0.3
2,583,046	+		GFF2566	0.85	-0.4
2,583,062	+		GFF2566	0.87	+0.3
2,583,064	+		GFF2566	0.87	-0.3
2,583,070	-		GFF2566	0.88	+0.9
2,583,070	-		GFF2566	0.88	+1.1
2,583,070	-		GFF2566	0.88	-0.1
2,583,070	-		GFF2566	0.88	-0.7
2,583,094	-				-0.7
2,583,094	-				+0.1
2,583,112	+				+0.7
2,583,179	+				+2.0
2,583,208	-				+0.0
2,583,235	+				+0.1
2,583,264	+				+1.3
2,583,272	-				-0.1
2,583,277	-				+0.8
2,583,277	-				+0.1
2,583,290	-				+1.4
2,583,345	+				-0.2
2,583,345	+				+0.1
2,583,345	+				-0.4
2,583,349	+		GFF2567	0.10	+0.1
2,583,353	-		GFF2567	0.11	-0.7
2,583,355	+		GFF2567	0.11	-0.4
2,583,367	+		GFF2567	0.12	+1.6