Strain Fitness in Sphingobium sp. HT1-2 around GFF2556

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,572,427	+				-0.5
2,572,429	+				-2.2
2,572,441	+				-0.4
2,572,451	+				-1.1
2,572,451	+				-2.8
2,572,451	+				-0.4
2,572,451	+				-1.4
2,572,451	+				-0.3
2,572,451	+				-0.4
2,572,451	+				+2.0
2,572,456	+				-1.1
2,572,459	-				-0.3
2,572,459	-				-0.3
2,572,459	-				+0.7
2,572,459	-				-0.9
2,572,459	-				+0.1
2,572,459	-				+0.7
2,572,460	+				+0.4
2,572,464	-				-1.4
2,572,467	+				-1.8
2,572,468	-				+0.7
2,572,469	-				+0.1
2,572,469	-				-0.2
2,572,480	+				-0.1
2,572,488	-				-0.4
2,572,490	+				+0.7
2,572,490	+				-0.4
2,572,495	+				+0.2
2,572,498	-				-0.6
2,572,516	+				-0.8
2,572,521	+				-0.5
2,572,523	-				-2.2
2,572,523	-				-0.9
2,572,523	-				-0.7
2,572,526	+				+0.7
2,572,529	-				+0.2
2,572,539	-		GFF2554	0.12	-2.3
2,572,540	+		GFF2554	0.12	-0.1
2,572,540	+		GFF2554	0.12	-0.8
2,572,566	+		GFF2554	0.21	-0.8
2,572,574	-		GFF2554	0.23	+1.1
2,572,578	-		GFF2554	0.24	+0.1
2,572,581	-		GFF2554	0.25	-0.5
2,572,609	-		GFF2554	0.34	+0.8
2,572,629	-		GFF2554	0.41	+0.0
2,572,663	+		GFF2554	0.52	+0.3
2,572,671	-		GFF2554	0.54	-1.8
2,572,671	-		GFF2554	0.54	-0.5
2,572,688	-		GFF2554	0.60	+0.2
2,572,693	-		GFF2554	0.61	+0.5
2,572,693	-		GFF2554	0.61	-1.0
2,572,700	+		GFF2554	0.63	-0.3
2,572,708	+		GFF2554	0.66	-0.8
2,572,708	+		GFF2554	0.66	-0.2
2,572,708	+		GFF2554	0.66	-0.6
2,572,714	+		GFF2554	0.68	-0.9
2,572,716	-		GFF2554	0.69	-0.2
2,572,716	-		GFF2554	0.69	-0.9
2,572,716	-		GFF2554	0.69	-2.5
2,572,726	-		GFF2554	0.72	-1.2
2,572,726	-		GFF2554	0.72	-0.6
2,572,734	-		GFF2554	0.74	-1.4
2,572,784	-				-0.4
2,572,785	+				-0.4
2,572,820	+				-0.5
2,572,820	+				+0.8
2,572,837	+				-1.4
2,572,837	+				-0.2
2,572,842	+				+0.9
2,572,870	+				+0.8
2,572,870	+				-0.7
2,572,874	-				-1.6
2,572,894	+				-1.2
2,572,906	-		GFF2555	0.12	-1.4
2,572,929	+		GFF2555	0.16	-0.3
2,572,937	-		GFF2555	0.18	+0.3
2,572,937	-		GFF2555	0.18	-0.7
2,572,937	-		GFF2555	0.18	-1.4
2,572,937	-		GFF2555	0.18	-0.9
2,572,940	+		GFF2555	0.19	-0.8
2,572,948	-		GFF2555	0.20	+0.4
2,572,948	-		GFF2555	0.20	+0.4
2,572,963	+		GFF2555	0.23	-0.1
2,572,971	-		GFF2555	0.25	-0.3
2,572,975	-		GFF2555	0.25	-1.0
2,572,985	+		GFF2555	0.27	+0.7
2,573,003	+		GFF2555	0.31	+0.5
2,573,007	-		GFF2555	0.32	-0.6
2,573,038	-		GFF2555	0.38	+1.4
2,573,051	+		GFF2555	0.40	-0.6
2,573,059	-		GFF2555	0.42	-1.0
2,573,061	-		GFF2555	0.42	+0.8
2,573,072	-		GFF2555	0.44	-1.8
2,573,072	-		GFF2555	0.44	-0.3
2,573,072	-		GFF2555	0.44	-1.2
2,573,072	-		GFF2555	0.44	-0.4
2,573,135	-		GFF2555	0.56	+0.5
2,573,148	-		GFF2555	0.59	-0.5
2,573,184	-		GFF2555	0.66	-1.9
2,573,258	-		GFF2555	0.80	-0.4
2,573,302	-		GFF2555	0.89	-1.0
2,573,304	-		GFF2555	0.89	-0.9
2,573,327	-				+1.0
2,573,436	+				-0.1
2,573,441	+				-1.0
2,573,464	-				-0.4
2,573,535	+		GFF2556	0.14	-0.2
2,573,595	-		GFF2556	0.22	-0.5
2,573,596	+		GFF2556	0.22	+0.3
2,573,604	+		GFF2556	0.23	-0.4
2,573,622	-		GFF2556	0.25	-1.0
2,573,655	-		GFF2556	0.29	+1.3
2,573,666	+		GFF2556	0.31	-1.0
2,573,722	-		GFF2556	0.38	-1.2
2,573,777	-		GFF2556	0.45	-0.8
2,573,796	-		GFF2556	0.47	-0.3
2,573,825	+		GFF2556	0.51	-0.2
2,573,830	+		GFF2556	0.52	-0.8
2,573,848	-		GFF2556	0.54	-1.2
2,574,014	-		GFF2556	0.76	-0.6
2,574,015	+		GFF2556	0.76	-0.0
2,574,029	+		GFF2556	0.77	-0.9
2,574,134	+				+0.7
2,574,167	+				+1.0
2,574,215	+				-2.2
2,574,225	+				-0.5
2,574,225	-				-0.7
2,574,233	-				+1.9
2,574,242	+				-0.4
2,574,250	-				-1.0
2,574,268	+				-1.6
2,574,450	+		GFF2557	0.54	-0.9
2,574,469	+		GFF2557	0.59	-0.4
2,574,531	+		GFF2557	0.78	-0.3
2,574,591	+				-0.3
2,574,617	-				+1.6
2,574,617	-				-0.2
2,574,645	+				-0.3
2,574,645	-				-0.5
2,574,676	-				-0.9
2,574,677	+				+1.4
2,574,695	-				-1.5
2,574,736	+				-0.3
2,574,736	+				-0.9
2,574,745	-				-0.6
2,574,761	+		GFF2558	0.11	-3.1
2,574,782	+		GFF2558	0.13	-0.2
2,574,782	+		GFF2558	0.13	-1.6
2,574,790	-		GFF2558	0.15	-0.6
2,574,790	-		GFF2558	0.15	+1.6
2,574,815	+		GFF2558	0.18	-0.6
2,574,835	-		GFF2558	0.21	-0.2
2,574,849	+		GFF2558	0.23	-0.8
2,574,865	-		GFF2558	0.25	+0.0
2,574,884	+		GFF2558	0.27	+1.0
2,574,892	-		GFF2558	0.29	-0.2
2,574,894	-		GFF2558	0.29	-1.0
2,574,894	-		GFF2558	0.29	-0.3
2,574,894	-		GFF2558	0.29	+1.4
2,574,899	-		GFF2558	0.29	-1.6
2,574,904	+		GFF2558	0.30	+0.2
2,574,911	+		GFF2558	0.31	+0.5
2,574,911	+		GFF2558	0.31	-0.5
2,574,917	+		GFF2558	0.32	+0.2
2,574,919	-		GFF2558	0.32	+0.6
2,574,951	-		GFF2558	0.37	-0.2
2,574,965	-		GFF2558	0.39	-0.1
2,574,966	-		GFF2558	0.39	+0.7
2,574,979	+		GFF2558	0.40	+0.3
2,574,987	-		GFF2558	0.42	-0.8
2,574,992	-		GFF2558	0.42	+1.0
2,574,992	-		GFF2558	0.42	-0.1
2,574,999	+		GFF2558	0.43	-0.5
2,575,026	-		GFF2558	0.47	+0.9
2,575,034	-		GFF2558	0.48	-0.2
2,575,055	-		GFF2558	0.51	+1.0
2,575,060	+		GFF2558	0.52	-0.1
2,575,091	+		GFF2558	0.56	-0.7
2,575,091	+		GFF2558	0.56	-1.7
2,575,099	-		GFF2558	0.57	+1.8
2,575,099	-		GFF2558	0.57	+0.5
2,575,099	-		GFF2558	0.57	-0.7
2,575,125	-		GFF2558	0.60	-0.6
2,575,128	+		GFF2558	0.61	-0.9
2,575,136	-		GFF2558	0.62	+0.9
2,575,136	-		GFF2558	0.62	+1.7
2,575,136	-		GFF2558	0.62	-0.5
2,575,143	+		GFF2558	0.63	-0.3
2,575,150	+		GFF2558	0.64	-0.7
2,575,150	+		GFF2558	0.64	-0.2
2,575,150	+		GFF2558	0.64	+0.4
2,575,151	-		GFF2558	0.64	-0.4
2,575,152	+		GFF2558	0.64	+0.8
2,575,152	+		GFF2558	0.64	+0.7
2,575,158	-		GFF2558	0.65	+0.7
2,575,160	-		GFF2558	0.65	-1.6
2,575,160	-		GFF2558	0.65	+0.4
2,575,165	+		GFF2558	0.66	-0.0
2,575,165	+		GFF2558	0.66	-0.8
2,575,165	+		GFF2558	0.66	-0.1
2,575,167	-		GFF2558	0.66	-0.9
2,575,173	-		GFF2558	0.67	+0.2
2,575,173	-		GFF2558	0.67	+0.3
2,575,173	-		GFF2558	0.67	+0.9
2,575,195	+		GFF2558	0.70	+0.0
2,575,198	+		GFF2558	0.71	+0.1
2,575,201	-		GFF2558	0.71	-1.9