Strain Fitness in Sphingobium sp. HT1-2 around GFF2553

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,570,274	-		GFF2551	0.47	-0.3
2,570,280	-		GFF2551	0.48	-1.1
2,570,292	-		GFF2551	0.49	+0.5
2,570,314	+		GFF2551	0.52	-0.2
2,570,314	+		GFF2551	0.52	-0.2
2,570,322	-		GFF2551	0.53	-0.2
2,570,373	+		GFF2551	0.58	-0.1
2,570,380	+		GFF2551	0.59	-0.3
2,570,388	-		GFF2551	0.60	+1.2
2,570,390	+		GFF2551	0.60	+1.6
2,570,390	+		GFF2551	0.60	+1.1
2,570,456	+		GFF2551	0.67	-0.3
2,570,464	-		GFF2551	0.68	-1.0
2,570,466	+		GFF2551	0.68	-1.3
2,570,466	+		GFF2551	0.68	-1.0
2,570,466	+		GFF2551	0.68	+0.9
2,570,474	+		GFF2551	0.69	+0.2
2,570,474	-		GFF2551	0.69	-0.2
2,570,474	-		GFF2551	0.69	+0.2
2,570,477	-		GFF2551	0.69	-1.5
2,570,507	+		GFF2551	0.72	-1.4
2,570,507	+		GFF2551	0.72	-0.8
2,570,513	+		GFF2551	0.73	-1.2
2,570,515	-		GFF2551	0.73	-1.0
2,570,518	+		GFF2551	0.73	-0.9
2,570,526	-		GFF2551	0.74	-1.5
2,570,536	-		GFF2551	0.75	-0.0
2,570,541	+		GFF2551	0.76	-2.2
2,570,542	+		GFF2551	0.76	-0.2
2,570,542	+		GFF2551	0.76	-0.8
2,570,550	-		GFF2551	0.77	-0.9
2,570,550	-		GFF2551	0.77	+1.1
2,570,565	-		GFF2551	0.78	-1.0
2,570,565	-		GFF2551	0.78	-0.8
2,570,572	-		GFF2551	0.79	-0.4
2,570,592	+		GFF2551	0.81	-0.1
2,570,592	+		GFF2551	0.81	+0.3
2,570,604	+		GFF2551	0.83	-1.0
2,570,625	+		GFF2551	0.85	-0.2
2,570,625	+		GFF2551	0.85	-1.6
2,570,633	-		GFF2551	0.86	-1.8
2,570,633	-		GFF2551	0.86	+0.8
2,570,654	-		GFF2551	0.88	-0.5
2,570,660	-		GFF2551	0.89	-0.9
2,570,677	-				+0.4
2,570,707	+				-1.3
2,570,713	+				+1.2
2,570,715	-				-0.9
2,570,721	-				+0.4
2,570,733	-				+1.4
2,570,740	-				-1.4
2,570,746	+				-0.4
2,570,753	+				+0.8
2,570,788	-				-1.1
2,570,862	+				-0.2
2,570,870	-				-1.4
2,570,872	+				-0.9
2,570,872	+				+1.3
2,570,872	+				+0.6
2,570,880	-				-0.1
2,570,880	-				-1.2
2,570,880	-				-1.6
2,570,880	-				-0.3
2,570,880	-				-0.5
2,570,881	+				+0.0
2,570,882	+				-1.4
2,570,882	+				-0.2
2,570,882	+				+0.3
2,570,882	+				+0.2
2,570,889	-				-2.5
2,570,890	-				-1.6
2,570,890	-				+0.2
2,570,890	-				+0.4
2,570,890	-				+0.5
2,570,890	-				-2.0
2,570,890	-				-2.0
2,570,890	-				-0.5
2,570,960	+				+0.7
2,570,960	+				-1.9
2,570,968	-				-1.4
2,570,968	-				-0.6
2,570,968	-				-1.1
2,570,973	-				-1.2
2,571,005	+		GFF2552	0.15	+0.6
2,571,007	+		GFF2552	0.15	-0.6
2,571,007	+		GFF2552	0.15	-1.5
2,571,007	+		GFF2552	0.15	+0.0
2,571,011	+		GFF2552	0.17	-1.1
2,571,062	-		GFF2552	0.37	-0.6
2,571,094	-		GFF2552	0.49	-1.7
2,571,135	+		GFF2552	0.65	+0.0
2,571,143	-		GFF2552	0.69	-0.2
2,571,143	-		GFF2552	0.69	-1.0
2,571,143	-		GFF2552	0.69	-0.4
2,571,143	-		GFF2552	0.69	+1.3
2,571,161	-		GFF2552	0.76	+0.6
2,571,174	-		GFF2552	0.81	-0.0
2,571,176	+		GFF2552	0.82	+0.7
2,571,178	+		GFF2552	0.82	-2.2
2,571,180	-		GFF2552	0.83	-1.6
2,571,182	+		GFF2552	0.84	+0.8
2,571,192	+		GFF2552	0.88	-0.0
2,571,200	-				+0.5
2,571,200	-				-0.0
2,571,211	+				+0.1
2,571,211	+				-0.7
2,571,211	+				-1.6
2,571,211	+				-1.0
2,571,219	-				-0.7
2,571,225	-				+0.2
2,571,227	+				+0.2
2,571,227	+				-0.5
2,571,227	+				-3.4
2,571,256	+				-0.1
2,571,260	+				-1.5
2,571,309	+				-0.6
2,571,324	+				-0.3
2,571,346	+		GFF2553	0.11	+0.6
2,571,389	+		GFF2553	0.16	+0.4
2,571,400	+		GFF2553	0.17	-1.2
2,571,406	+		GFF2553	0.18	+1.2
2,571,410	+		GFF2553	0.18	+0.6
2,571,412	-		GFF2553	0.19	+1.0
2,571,414	-		GFF2553	0.19	-1.1
2,571,433	+		GFF2553	0.21	+1.5
2,571,433	-		GFF2553	0.21	-1.4
2,571,433	-		GFF2553	0.21	-0.4
2,571,448	+		GFF2553	0.23	-0.6
2,571,448	+		GFF2553	0.23	-0.3
2,571,448	+		GFF2553	0.23	-0.1
2,571,448	+		GFF2553	0.23	-1.0
2,571,451	-		GFF2553	0.23	-1.4
2,571,456	-		GFF2553	0.23	-0.2
2,571,456	-		GFF2553	0.23	+0.5
2,571,456	-		GFF2553	0.23	-0.7
2,571,456	-		GFF2553	0.23	-2.0
2,571,464	+		GFF2553	0.24	-0.9
2,571,465	-		GFF2553	0.24	-0.2
2,571,472	-		GFF2553	0.25	+0.9
2,571,487	-		GFF2553	0.27	-0.0
2,571,487	-		GFF2553	0.27	+1.1
2,571,487	-		GFF2553	0.27	-0.7
2,571,487	-		GFF2553	0.27	+0.5
2,571,496	+		GFF2553	0.28	+1.0
2,571,504	-		GFF2553	0.29	-0.7
2,571,516	-		GFF2553	0.30	-1.6
2,571,518	-		GFF2553	0.30	-0.0
2,571,518	-		GFF2553	0.30	+1.3
2,571,526	-		GFF2553	0.31	-0.0
2,571,526	-		GFF2553	0.31	-1.0
2,571,533	+		GFF2553	0.32	-0.8
2,571,591	+		GFF2553	0.38	-0.2
2,571,606	-		GFF2553	0.40	+0.2
2,571,630	+		GFF2553	0.43	-1.6
2,571,630	+		GFF2553	0.43	-0.7
2,571,630	+		GFF2553	0.43	+0.1
2,571,686	-		GFF2553	0.49	+0.6
2,571,710	+		GFF2553	0.52	-0.8
2,571,718	-		GFF2553	0.53	-0.6
2,571,731	+		GFF2553	0.54	-0.8
2,571,752	+		GFF2553	0.56	-0.5
2,571,754	+		GFF2553	0.57	-0.4
2,571,766	+		GFF2553	0.58	-1.2
2,571,766	+		GFF2553	0.58	-0.8
2,571,766	+		GFF2553	0.58	+0.5
2,571,774	-		GFF2553	0.59	-0.6
2,571,777	+		GFF2553	0.59	-0.6
2,571,814	-		GFF2553	0.63	-1.0
2,571,818	+		GFF2553	0.64	+0.2
2,571,818	+		GFF2553	0.64	-0.7
2,571,818	+		GFF2553	0.64	-1.6
2,571,818	+		GFF2553	0.64	-1.0
2,571,818	+		GFF2553	0.64	-0.8
2,571,826	-		GFF2553	0.65	-0.6
2,571,831	-		GFF2553	0.65	-1.9
2,571,831	-		GFF2553	0.65	-1.2
2,571,831	-		GFF2553	0.65	+0.2
2,571,833	+		GFF2553	0.65	-1.2
2,571,833	+		GFF2553	0.65	-0.1
2,571,860	+		GFF2553	0.68	-0.5
2,571,901	-		GFF2553	0.73	+0.9
2,571,901	-		GFF2553	0.73	-0.8
2,571,901	-		GFF2553	0.73	-2.3
2,571,903	-		GFF2553	0.73	-0.7
2,571,918	-		GFF2553	0.75	-2.7
2,571,920	+		GFF2553	0.75	+0.0
2,571,920	+		GFF2553	0.75	-1.9
2,571,920	+		GFF2553	0.75	-1.6
2,571,920	+		GFF2553	0.75	-0.5
2,571,924	-		GFF2553	0.76	-0.6
2,571,927	+		GFF2553	0.76	-0.9
2,571,928	-		GFF2553	0.76	-1.6
2,571,928	-		GFF2553	0.76	-0.2
2,571,928	-		GFF2553	0.76	-0.2
2,571,928	-		GFF2553	0.76	-1.5
2,571,942	+		GFF2553	0.78	-0.2
2,571,945	-		GFF2553	0.78	-1.2
2,571,948	+		GFF2553	0.78	+0.8
2,571,966	+		GFF2553	0.80	-1.4
2,571,974	-		GFF2553	0.81	-1.1
2,571,974	-		GFF2553	0.81	-0.8
2,571,984	+		GFF2553	0.82	+0.7
2,571,984	+		GFF2553	0.82	-1.0
2,572,007	+		GFF2553	0.85	-1.0
2,572,054	-				-1.2
2,572,058	-				-0.7
2,572,060	-				-1.8
2,572,079	-				+0.0
2,572,082	-				-0.7
2,572,094	-				-0.0
2,572,109	-				-2.1
2,572,143	+				-2.5
2,572,144	+				-0.1
2,572,214	-				+1.6
2,572,222	-				+0.0
2,572,242	-				+0.6
2,572,244	+				-1.1
2,572,244	+				-0.6
2,572,244	+				+0.2
2,572,244	+				-0.7
2,572,244	+				-0.2
2,572,244	+				+1.6
2,572,244	+				-1.1
2,572,244	+				-1.0
2,572,244	+				-0.8
2,572,244	+				-0.8
2,572,244	+				+0.6
2,572,252	-				-1.5
2,572,252	-				-1.5
2,572,252	-				-1.4
2,572,252	-				-1.0
2,572,252	-				-0.3
2,572,252	-				-1.5
2,572,252	-				-0.5
2,572,265	+				+1.4
2,572,273	-				-1.0
2,572,290	+				-0.1
2,572,300	+				-1.8
2,572,313	-				+0.5
2,572,423	+				+0.7
2,572,427	+				-0.5
2,572,429	+				-2.2
2,572,441	+				-0.4
2,572,451	+				-1.1
2,572,451	+				-2.8
2,572,451	+				-0.4
2,572,451	+				-1.4
2,572,451	+				-0.3
2,572,451	+				-0.4
2,572,451	+				+2.0
2,572,456	+				-1.1
2,572,459	-				-0.3
2,572,459	-				-0.3
2,572,459	-				+0.7
2,572,459	-				-0.9
2,572,459	-				+0.1
2,572,459	-				+0.7
2,572,460	+				+0.4
2,572,464	-				-1.4
2,572,467	+				-1.8
2,572,468	-				+0.7
2,572,469	-				+0.1
2,572,469	-				-0.2
2,572,480	+				-0.1
2,572,488	-				-0.4
2,572,490	+				+0.7
2,572,490	+				-0.4
2,572,495	+				+0.2
2,572,498	-				-0.6
2,572,516	+				-0.8
2,572,521	+				-0.5
2,572,523	-				-2.2
2,572,523	-				-0.9
2,572,523	-				-0.7
2,572,526	+				+0.7
2,572,529	-				+0.2
2,572,539	-		GFF2554	0.12	-2.3
2,572,540	+		GFF2554	0.12	-0.1
2,572,540	+		GFF2554	0.12	-0.8
2,572,566	+		GFF2554	0.21	-0.8
2,572,574	-		GFF2554	0.23	+1.1
2,572,578	-		GFF2554	0.24	+0.1
2,572,581	-		GFF2554	0.25	-0.5
2,572,609	-		GFF2554	0.34	+0.8
2,572,629	-		GFF2554	0.41	+0.0
2,572,663	+		GFF2554	0.52	+0.3
2,572,671	-		GFF2554	0.54	-1.8
2,572,671	-		GFF2554	0.54	-0.5
2,572,688	-		GFF2554	0.60	+0.2
2,572,693	-		GFF2554	0.61	+0.5
2,572,693	-		GFF2554	0.61	-1.0
2,572,700	+		GFF2554	0.63	-0.3
2,572,708	+		GFF2554	0.66	-0.8
2,572,708	+		GFF2554	0.66	-0.2
2,572,708	+		GFF2554	0.66	-0.6
2,572,714	+		GFF2554	0.68	-0.9
2,572,716	-		GFF2554	0.69	-0.2
2,572,716	-		GFF2554	0.69	-0.9
2,572,716	-		GFF2554	0.69	-2.5
2,572,726	-		GFF2554	0.72	-1.2
2,572,726	-		GFF2554	0.72	-0.6
2,572,734	-		GFF2554	0.74	-1.4
2,572,784	-				-0.4
2,572,785	+				-0.4
2,572,820	+				-0.5
2,572,820	+				+0.8
2,572,837	+				-1.4
2,572,837	+				-0.2
2,572,842	+				+0.9
2,572,870	+				+0.8
2,572,870	+				-0.7
2,572,874	-				-1.6
2,572,894	+				-1.2
2,572,906	-		GFF2555	0.12	-1.4
2,572,929	+		GFF2555	0.16	-0.3
2,572,937	-		GFF2555	0.18	+0.3
2,572,937	-		GFF2555	0.18	-0.7
2,572,937	-		GFF2555	0.18	-1.4
2,572,937	-		GFF2555	0.18	-0.9
2,572,940	+		GFF2555	0.19	-0.8
2,572,948	-		GFF2555	0.20	+0.4
2,572,948	-		GFF2555	0.20	+0.4
2,572,963	+		GFF2555	0.23	-0.1
2,572,971	-		GFF2555	0.25	-0.3
2,572,975	-		GFF2555	0.25	-1.0
2,572,985	+		GFF2555	0.27	+0.7
2,573,003	+		GFF2555	0.31	+0.5
2,573,007	-		GFF2555	0.32	-0.6
2,573,038	-		GFF2555	0.38	+1.4
2,573,051	+		GFF2555	0.40	-0.6
2,573,059	-		GFF2555	0.42	-1.0
2,573,061	-		GFF2555	0.42	+0.8
2,573,072	-		GFF2555	0.44	-1.8
2,573,072	-		GFF2555	0.44	-0.3
2,573,072	-		GFF2555	0.44	-1.2
2,573,072	-		GFF2555	0.44	-0.4
2,573,135	-		GFF2555	0.56	+0.5