Strain Fitness in Sphingobium sp. HT1-2 around GFF2549

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,566,443	+				-0.1
2,566,445	+				-1.2
2,566,451	-				-0.9
2,566,451	-				-0.9
2,566,455	+				-0.2
2,566,457	-				-0.7
2,566,465	-				+0.9
2,566,477	-				-1.1
2,566,513	+				-1.4
2,566,535	-				-0.1
2,566,537	+				-0.9
2,566,568	+		GFF2548	0.13	-1.5
2,566,568	+		GFF2548	0.13	+1.1
2,566,576	-		GFF2548	0.14	-0.4
2,566,586	+		GFF2548	0.15	-0.4
2,566,594	-		GFF2548	0.16	+0.1
2,566,594	-		GFF2548	0.16	+1.1
2,566,597	+		GFF2548	0.16	-1.0
2,566,597	+		GFF2548	0.16	+0.7
2,566,600	-		GFF2548	0.17	-0.0
2,566,602	+		GFF2548	0.17	-1.3
2,566,602	+		GFF2548	0.17	-1.4
2,566,602	+		GFF2548	0.17	-1.5
2,566,607	+		GFF2548	0.18	-1.8
2,566,610	-		GFF2548	0.18	-0.9
2,566,610	-		GFF2548	0.18	+0.5
2,566,610	-		GFF2548	0.18	-0.4
2,566,610	-		GFF2548	0.18	-0.6
2,566,610	-		GFF2548	0.18	-1.7
2,566,612	+		GFF2548	0.18	+0.1
2,566,615	-		GFF2548	0.19	-1.8
2,566,615	-		GFF2548	0.19	+0.1
2,566,620	-		GFF2548	0.19	-0.2
2,566,635	-		GFF2548	0.21	-0.2
2,566,643	+		GFF2548	0.22	-1.1
2,566,643	+		GFF2548	0.22	+0.0
2,566,651	-		GFF2548	0.23	-0.4
2,566,668	-		GFF2548	0.25	-0.8
2,566,694	+		GFF2548	0.28	+1.3
2,566,699	+		GFF2548	0.29	-0.5
2,566,702	-		GFF2548	0.29	-0.9
2,566,712	+		GFF2548	0.30	-1.3
2,566,715	-		GFF2548	0.31	-1.6
2,566,715	-		GFF2548	0.31	-0.3
2,566,720	-		GFF2548	0.31	-1.2
2,566,720	-		GFF2548	0.31	-0.2
2,566,720	-		GFF2548	0.31	-1.0
2,566,720	-		GFF2548	0.31	-0.2
2,566,722	+		GFF2548	0.32	-2.0
2,566,722	+		GFF2548	0.32	-1.8
2,566,722	+		GFF2548	0.32	-0.3
2,566,730	-		GFF2548	0.33	-1.4
2,566,732	+		GFF2548	0.33	+0.6
2,566,750	+		GFF2548	0.35	+0.2
2,566,760	+		GFF2548	0.36	+0.6
2,566,760	+		GFF2548	0.36	-0.7
2,566,763	-		GFF2548	0.37	-0.2
2,566,763	-		GFF2548	0.37	-0.6
2,566,794	-		GFF2548	0.40	-0.1
2,566,804	+		GFF2548	0.42	-0.9
2,566,804	+		GFF2548	0.42	-0.6
2,566,816	+		GFF2548	0.43	-0.2
2,566,833	-		GFF2548	0.45	-0.7
2,566,835	+		GFF2548	0.45	+0.2
2,566,838	-		GFF2548	0.46	+0.5
2,566,843	-		GFF2548	0.46	+0.4
2,566,849	+		GFF2548	0.47	-1.4
2,566,849	+		GFF2548	0.47	-1.3
2,566,849	+		GFF2548	0.47	-0.5
2,566,854	+		GFF2548	0.48	-0.4
2,566,857	-		GFF2548	0.48	-0.6
2,566,859	+		GFF2548	0.48	-0.1
2,566,870	+		GFF2548	0.50	-0.9
2,566,878	-		GFF2548	0.51	+0.8
2,566,878	-		GFF2548	0.51	+0.5
2,566,880	+		GFF2548	0.51	+0.1
2,566,880	+		GFF2548	0.51	+0.4
2,566,880	+		GFF2548	0.51	-0.3
2,566,880	+		GFF2548	0.51	-0.4
2,566,880	+		GFF2548	0.51	-0.6
2,566,881	-		GFF2548	0.51	-0.8
2,566,936	+		GFF2548	0.58	+0.1
2,566,936	-		GFF2548	0.58	-1.6
2,566,936	-		GFF2548	0.58	-0.2
2,566,941	+		GFF2548	0.58	+0.2
2,566,989	+		GFF2548	0.64	-1.4
2,566,989	+		GFF2548	0.64	-0.5
2,566,989	+		GFF2548	0.64	-0.8
2,566,989	+		GFF2548	0.64	+0.7
2,566,994	+		GFF2548	0.65	-0.3
2,566,997	-		GFF2548	0.65	-0.1
2,566,997	-		GFF2548	0.65	-0.9
2,566,997	-		GFF2548	0.65	-0.0
2,566,997	-		GFF2548	0.65	-0.4
2,567,002	-		GFF2548	0.66	+0.6
2,567,002	-		GFF2548	0.66	-0.2
2,567,017	-		GFF2548	0.68	-2.0
2,567,017	-		GFF2548	0.68	-0.4
2,567,029	+		GFF2548	0.69	+0.1
2,567,029	+		GFF2548	0.69	-0.0
2,567,034	+		GFF2548	0.70	+0.0
2,567,036	-		GFF2548	0.70	-1.5
2,567,037	-		GFF2548	0.70	-0.9
2,567,043	+		GFF2548	0.71	-0.2
2,567,045	+		GFF2548	0.71	-0.5
2,567,045	-		GFF2548	0.71	-2.4
2,567,051	-		GFF2548	0.72	-0.5
2,567,053	+		GFF2548	0.72	-0.2
2,567,053	+		GFF2548	0.72	-1.7
2,567,053	-		GFF2548	0.72	-0.4
2,567,056	-		GFF2548	0.73	-0.0
2,567,061	-		GFF2548	0.73	-0.8
2,567,089	+		GFF2548	0.77	+1.1
2,567,102	-		GFF2548	0.78	-1.0
2,567,116	-		GFF2548	0.80	-1.2
2,567,125	+		GFF2548	0.81	-3.0
2,567,144	-		GFF2548	0.83	-1.0
2,567,149	-		GFF2548	0.84	+0.8
2,567,167	+		GFF2548	0.86	-0.6
2,567,167	+		GFF2548	0.86	-0.6
2,567,175	-		GFF2548	0.87	+0.4
2,567,175	-		GFF2548	0.87	-0.7
2,567,186	+		GFF2548	0.88	-0.8
2,567,194	-		GFF2548	0.89	-1.2
2,567,194	-		GFF2548	0.89	+2.3
2,567,233	+				-0.7
2,567,241	-				-2.4
2,567,241	-				+0.3
2,567,241	-				-0.4
2,567,248	+				+0.6
2,567,248	+				-0.9
2,567,248	+				-1.5
2,567,248	+				-1.0
2,567,252	+				-1.4
2,567,283	+				-1.2
2,567,291	-				+0.7
2,567,326	+				-0.2
2,567,326	+				+2.5
2,567,328	+				+0.9
2,567,334	-				+0.4
2,567,334	-				-1.0
2,567,334	-				-0.5
2,567,334	-				-0.2
2,567,341	-				-0.4
2,567,341	-				+0.4
2,567,341	-				+0.0
2,567,341	-				+0.4
2,567,360	+				-0.2
2,567,368	-				-3.3
2,567,378	-				+0.2
2,567,385	+				-1.8
2,567,417	+				-0.4
2,567,417	+				-1.2
2,567,442	+				+0.6
2,567,442	+				-0.1
2,567,442	+				+1.1
2,567,450	-				-1.9
2,567,450	-				-1.1
2,567,450	-				-0.0
2,567,450	-				-1.4
2,567,452	+				-0.3
2,567,455	-				-1.3
2,567,463	+				-1.5
2,567,471	-				-1.0
2,567,471	-				-0.3
2,567,471	-				-0.5
2,567,474	+				-1.7
2,567,520	+		GFF2549	0.11	-0.7
2,567,520	+		GFF2549	0.11	+0.6
2,567,520	+		GFF2549	0.11	-0.3
2,567,520	+		GFF2549	0.11	-0.6
2,567,520	+		GFF2549	0.11	-1.4
2,567,520	+		GFF2549	0.11	-0.6
2,567,520	+		GFF2549	0.11	-0.4
2,567,520	+		GFF2549	0.11	-0.1
2,567,520	+		GFF2549	0.11	-0.4
2,567,528	-		GFF2549	0.11	-1.4
2,567,528	-		GFF2549	0.11	-0.4
2,567,528	-		GFF2549	0.11	-0.2
2,567,528	-		GFF2549	0.11	-0.3
2,567,528	-		GFF2549	0.11	-2.2
2,567,528	-		GFF2549	0.11	-0.9
2,567,538	+		GFF2549	0.12	-0.2
2,567,542	-		GFF2549	0.12	-1.7
2,567,565	-		GFF2549	0.13	+1.0
2,567,565	-		GFF2549	0.13	+0.3
2,567,575	-		GFF2549	0.13	-0.2
2,567,608	+		GFF2549	0.15	-0.8
2,567,608	+		GFF2549	0.15	-0.1
2,567,608	+		GFF2549	0.15	-0.9
2,567,635	-		GFF2549	0.16	-0.0
2,567,670	+		GFF2549	0.18	-1.7
2,567,678	-		GFF2549	0.18	-0.8
2,567,678	-		GFF2549	0.18	-1.5
2,567,683	-		GFF2549	0.18	-0.3
2,567,683	-		GFF2549	0.18	-1.2
2,567,688	+		GFF2549	0.19	-0.6
2,567,692	+		GFF2549	0.19	-0.0
2,567,692	+		GFF2549	0.19	+0.8
2,567,695	-		GFF2549	0.19	-0.4
2,567,739	+		GFF2549	0.21	+0.5
2,567,753	+		GFF2549	0.21	+0.5
2,567,805	+		GFF2549	0.24	+0.3
2,567,810	+		GFF2549	0.24	+1.1
2,567,836	+		GFF2549	0.25	-0.2
2,567,882	-		GFF2549	0.27	-1.4
2,567,904	-		GFF2549	0.28	-0.4
2,567,911	+		GFF2549	0.29	-0.5
2,567,917	+		GFF2549	0.29	-0.4
2,567,931	-		GFF2549	0.29	+0.7
2,567,962	+		GFF2549	0.31	-0.1
2,567,962	+		GFF2549	0.31	-1.2
2,567,962	+		GFF2549	0.31	-0.1
2,567,970	-		GFF2549	0.31	+0.0
2,567,970	-		GFF2549	0.31	+0.4
2,567,970	-		GFF2549	0.31	+0.6
2,567,970	-		GFF2549	0.31	-1.3
2,568,014	-		GFF2549	0.33	-0.6
2,568,017	+		GFF2549	0.33	-0.7
2,568,017	+		GFF2549	0.33	-0.2
2,568,035	+		GFF2549	0.34	-0.4
2,568,043	-		GFF2549	0.35	-2.3
2,568,048	+		GFF2549	0.35	+1.2
2,568,048	+		GFF2549	0.35	-2.1
2,568,056	-		GFF2549	0.35	-0.5
2,568,056	-		GFF2549	0.35	-0.6
2,568,087	-		GFF2549	0.36	-0.6
2,568,113	-		GFF2549	0.38	+1.5
2,568,115	+		GFF2549	0.38	-0.1
2,568,115	+		GFF2549	0.38	-0.6
2,568,115	+		GFF2549	0.38	-0.1
2,568,115	+		GFF2549	0.38	-1.8
2,568,115	+		GFF2549	0.38	-1.5
2,568,123	-		GFF2549	0.38	-0.6
2,568,123	-		GFF2549	0.38	+0.4
2,568,149	+		GFF2549	0.39	-0.1
2,568,150	+		GFF2549	0.39	+0.2
2,568,158	-		GFF2549	0.40	-1.5
2,568,194	-		GFF2549	0.41	-1.2
2,568,196	+		GFF2549	0.41	-0.6
2,568,226	+		GFF2549	0.43	-0.8
2,568,226	+		GFF2549	0.43	-0.9
2,568,226	+		GFF2549	0.43	+0.5
2,568,234	-		GFF2549	0.43	-2.4
2,568,249	+		GFF2549	0.44	-1.1
2,568,257	-		GFF2549	0.44	-0.9
2,568,257	-		GFF2549	0.44	-0.3
2,568,260	+		GFF2549	0.44	-1.2
2,568,267	+		GFF2549	0.45	+0.2
2,568,267	-		GFF2549	0.45	-1.4
2,568,292	-		GFF2549	0.46	-1.8
2,568,319	-		GFF2549	0.47	-0.1
2,568,330	-		GFF2549	0.47	-0.8
2,568,335	-		GFF2549	0.48	-0.5
2,568,344	+		GFF2549	0.48	-1.2
2,568,381	-		GFF2549	0.50	-0.1
2,568,391	-		GFF2549	0.50	-0.2
2,568,415	+		GFF2549	0.51	-1.2
2,568,415	+		GFF2549	0.51	-0.2
2,568,415	+		GFF2549	0.51	-0.5
2,568,423	-		GFF2549	0.52	+1.0
2,568,423	-		GFF2549	0.52	-1.0
2,568,423	-		GFF2549	0.52	-0.0
2,568,425	+		GFF2549	0.52	-0.2
2,568,428	-		GFF2549	0.52	-1.8
2,568,507	+		GFF2549	0.55	-0.5
2,568,508	-		GFF2549	0.55	+0.5
2,568,538	-		GFF2549	0.57	-0.8
2,568,540	+		GFF2549	0.57	-2.4
2,568,556	+		GFF2549	0.58	-0.2
2,568,588	-		GFF2549	0.59	+1.1
2,568,589	+		GFF2549	0.59	-1.2
2,568,589	+		GFF2549	0.59	-1.5
2,568,589	+		GFF2549	0.59	-1.0
2,568,630	+		GFF2549	0.61	-0.3
2,568,630	+		GFF2549	0.61	-1.5
2,568,638	-		GFF2549	0.61	+0.7
2,568,638	-		GFF2549	0.61	+0.4
2,568,638	-		GFF2549	0.61	-1.7
2,568,638	-		GFF2549	0.61	+0.8
2,568,638	-		GFF2549	0.61	-0.3
2,568,638	-		GFF2549	0.61	-1.2
2,568,645	+		GFF2549	0.62	-0.4
2,568,656	-		GFF2549	0.62	+1.2
2,568,663	+		GFF2549	0.62	-0.5
2,568,663	+		GFF2549	0.62	+0.8
2,568,663	+		GFF2549	0.62	-0.5
2,568,667	+		GFF2549	0.63	+0.1
2,568,667	+		GFF2549	0.63	+0.8
2,568,671	-		GFF2549	0.63	+0.1
2,568,671	-		GFF2549	0.63	-0.9
2,568,675	-		GFF2549	0.63	-0.7
2,568,678	+		GFF2549	0.63	+0.6
2,568,697	+		GFF2549	0.64	+0.8
2,568,728	-		GFF2549	0.65	-1.3
2,568,827	-		GFF2549	0.70	-0.0
2,568,896	-		GFF2549	0.73	-0.4
2,568,908	-		GFF2549	0.73	+0.2
2,568,950	-		GFF2549	0.75	-0.3
2,568,999	+		GFF2549	0.78	-1.8
2,569,012	-		GFF2549	0.78	-0.2
2,569,017	-		GFF2549	0.78	+0.2
2,569,021	+		GFF2549	0.78	-0.7
2,569,023	+		GFF2549	0.79	+0.4
2,569,023	+		GFF2549	0.79	-1.5
2,569,029	-		GFF2549	0.79	-1.8
2,569,031	-		GFF2549	0.79	-1.1
2,569,041	-		GFF2549	0.79	-0.0
2,569,041	-		GFF2549	0.79	-0.5
2,569,052	+		GFF2549	0.80	-0.4
2,569,055	+		GFF2549	0.80	-1.5
2,569,060	+		GFF2549	0.80	-1.2
2,569,081	+		GFF2549	0.81	-1.4
2,569,083	+		GFF2549	0.81	-1.2
2,569,083	+		GFF2549	0.81	-1.2
2,569,084	-		GFF2549	0.81	+1.0
2,569,089	-		GFF2549	0.82	+0.3
2,569,111	+		GFF2549	0.83	-1.2
2,569,126	+		GFF2549	0.83	+0.6
2,569,126	+		GFF2549	0.83	-0.1
2,569,138	+		GFF2549	0.84	+0.4
2,569,141	-		GFF2549	0.84	-0.6
2,569,143	+		GFF2549	0.84	-0.2
2,569,146	-		GFF2549	0.84	-0.6
2,569,171	+		GFF2549	0.85	-1.7
2,569,177	+		GFF2549	0.86	-1.4
2,569,182	+		GFF2549	0.86	+1.2
2,569,185	+		GFF2549	0.86	-0.9
2,569,218	+		GFF2549	0.87	+0.7
2,569,219	+		GFF2549	0.87	-0.0
2,569,274	+		GFF2549	0.90	+0.4
2,569,274	+		GFF2549	0.90	-1.3
2,569,282	-				-0.7
2,569,282	-				-1.8
2,569,282	-				+1.0
2,569,282	-				+0.8
2,569,297	-				+0.3
2,569,307	-				-1.1
2,569,307	-				-1.2
2,569,307	-				-2.1
2,569,307	-				-0.1
2,569,307	-				+0.4
2,569,317	+				-1.5
2,569,322	+				-0.9
2,569,323	-				-0.9
2,569,341	-				-0.5
2,569,341	-				+1.3
2,569,343	+				-1.4
2,569,344	+				+1.3
2,569,344	+				-0.7
2,569,344	+				+0.3
2,569,351	-				+0.6
2,569,357	-				-0.4
2,569,363	+				-1.4
2,569,370	+				-1.8
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