Strain Fitness in Sphingobium sp. HT1-2 around GFF25

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
16,582	-		GFF23	0.51	-0.5
16,582	-		GFF23	0.51	-0.4
16,582	-		GFF23	0.51	-0.6
16,585	-		GFF23	0.51	-0.4
16,590	-		GFF23	0.52	+0.5
16,598	+		GFF23	0.53	-1.7
16,598	+		GFF23	0.53	+1.5
16,641	+		GFF23	0.60	-1.0
16,649	-		GFF23	0.61	-1.1
16,649	-		GFF23	0.61	+0.2
16,680	-		GFF23	0.66	-1.0
16,693	-		GFF23	0.68	+0.0
16,698	+		GFF23	0.69	-0.5
16,703	+		GFF23	0.70	+0.4
16,706	-		GFF23	0.71	+0.8
16,706	-		GFF23	0.71	-2.0
16,708	+		GFF23	0.71	-0.7
16,708	+		GFF23	0.71	+1.0
16,716	-		GFF23	0.72	-0.0
16,716	-		GFF23	0.72	-1.1
16,719	+		GFF23	0.73	-1.3
16,721	-		GFF23	0.73	+0.6
16,723	+		GFF23	0.73	-0.1
16,724	+		GFF23	0.73	-1.0
16,732	-		GFF23	0.75	-0.1
16,732	-		GFF23	0.75	-1.1
16,794	-		GFF23	0.85	-0.4
16,799	+		GFF23	0.86	-0.8
16,799	+		GFF23	0.86	-0.3
16,799	+		GFF23	0.86	-0.3
16,799	+		GFF23	0.86	-0.4
16,799	+		GFF23	0.86	+0.8
16,799	+		GFF23	0.86	+1.4
16,799	+		GFF23	0.86	-0.1
16,799	+		GFF23	0.86	-0.4
16,806	+		GFF23	0.87	-0.2
16,806	+		GFF23	0.87	+0.6
16,807	-		GFF23	0.87	-2.1
16,807	-		GFF23	0.87	+1.2
16,807	-		GFF23	0.87	-1.2
16,807	-		GFF23	0.87	+0.6
16,807	-		GFF23	0.87	-0.4
16,807	-		GFF23	0.87	-0.3
16,807	-		GFF23	0.87	+0.8
16,807	-		GFF23	0.87	-1.2
16,807	-		GFF23	0.87	-0.5
16,807	-		GFF23	0.87	+1.4
16,807	-		GFF23	0.87	-0.0
16,807	-		GFF23	0.87	+0.8
16,807	-		GFF23	0.87	-0.5
16,807	-		GFF23	0.87	-1.3
16,807	-		GFF23	0.87	+0.6
16,814	-		GFF23	0.88	-0.6
16,814	-		GFF23	0.88	+0.1
16,814	-		GFF23	0.88	+0.1
16,817	-		GFF23	0.88	+0.5
16,868	+				-0.1
16,868	+				-1.6
16,876	-				+1.3
16,890	+				+1.8
16,901	+				-1.3
16,903	+				+2.0
16,903	+				+1.5
16,911	-				-0.5
17,021	+		GFF24	0.21	-2.0
17,035	-		GFF24	0.23	-0.1
17,044	+		GFF24	0.24	+0.3
17,044	+		GFF24	0.24	-0.3
17,044	+		GFF24	0.24	+0.4
17,051	+		GFF24	0.25	+0.3
17,051	+		GFF24	0.25	+1.1
17,051	+		GFF24	0.25	+0.6
17,051	-		GFF24	0.25	-0.2
17,052	-		GFF24	0.26	-0.4
17,059	-		GFF24	0.27	-1.0
17,059	-		GFF24	0.27	-1.4
17,059	-		GFF24	0.27	-0.6
17,059	-		GFF24	0.27	+0.1
17,089	+		GFF24	0.31	-1.2
17,097	-		GFF24	0.32	+0.6
17,114	+		GFF24	0.35	-0.5
17,114	+		GFF24	0.35	-0.1
17,122	-		GFF24	0.36	-1.6
17,122	-		GFF24	0.36	-0.1
17,197	+		GFF24	0.48	+1.0
17,197	+		GFF24	0.48	-1.8
17,230	+		GFF24	0.53	+0.2
17,240	+		GFF24	0.54	-0.1
17,240	+		GFF24	0.54	+0.1
17,240	+		GFF24	0.54	-0.3
17,245	+		GFF24	0.55	-0.7
17,248	-		GFF24	0.56	-0.1
17,253	-		GFF24	0.56	+0.2
17,260	-		GFF24	0.57	-2.4
17,262	+		GFF24	0.58	+0.4
17,294	+		GFF24	0.63	-0.0
17,294	+		GFF24	0.63	-1.3
17,294	+		GFF24	0.63	-0.4
17,303	+		GFF24	0.64	-0.5
17,303	+		GFF24	0.64	-0.5
17,305	+		GFF24	0.64	-1.0
17,311	-		GFF24	0.65	-1.9
17,326	-		GFF24	0.67	-0.5
17,336	+		GFF24	0.69	+1.1
17,336	+		GFF24	0.69	-0.2
17,336	-		GFF24	0.69	-1.2
17,336	-		GFF24	0.69	-0.3
17,336	-		GFF24	0.69	-1.1
17,344	-		GFF24	0.70	-1.0
17,344	-		GFF24	0.70	-0.7
17,344	-		GFF24	0.70	-1.6
17,344	-		GFF24	0.70	+0.4
17,344	-		GFF24	0.70	-1.2
17,356	+		GFF24	0.72	-1.3
17,361	+		GFF24	0.73	-0.2
17,365	+		GFF24	0.73	-1.2
17,368	-		GFF24	0.74	-0.8
17,373	-		GFF24	0.75	-0.3
17,373	-		GFF24	0.75	-0.2
17,373	-		GFF24	0.75	-2.0
17,373	-		GFF24	0.75	-0.4
17,378	+		GFF24	0.75	+0.7
17,378	+		GFF24	0.75	+1.0
17,381	-		GFF24	0.76	+1.9
17,383	+		GFF24	0.76	+0.5
17,386	-		GFF24	0.77	+0.8
17,386	-		GFF24	0.77	-2.1
17,388	+		GFF24	0.77	-0.3
17,396	+		GFF24	0.78	-0.5
17,396	+		GFF24	0.78	-0.3
17,396	-		GFF24	0.78	-0.1
17,404	-		GFF24	0.79	-1.0
17,406	+		GFF24	0.80	-0.4
17,414	-		GFF24	0.81	-0.6
17,414	-		GFF24	0.81	-0.4
17,414	-		GFF24	0.81	+0.2
17,414	-		GFF24	0.81	+0.1
17,436	+		GFF24	0.84	-1.3
17,436	+		GFF24	0.84	-0.3
17,436	+		GFF24	0.84	-1.0
17,438	+		GFF24	0.85	+0.0
17,441	+		GFF24	0.85	-1.3
17,444	-		GFF24	0.85	+1.1
17,446	-		GFF24	0.86	-2.4
17,470	-		GFF24	0.89	+1.0
17,482	+				-1.2
17,517	+				-0.2
17,538	+				-1.2
17,538	+				-0.0
17,546	-				-0.3
17,547	-				+1.0
17,547	-				-1.2
17,547	-				+1.5
17,547	-				-0.3
17,547	-				+0.1
17,554	+				-0.4
17,569	-				-0.2
17,571	+				-0.0
17,579	-				-1.0
17,615	-		GFF25	0.11	-1.1
17,617	+		GFF25	0.11	-0.3
17,617	+		GFF25	0.11	+0.9
17,625	-		GFF25	0.13	+1.2
17,634	+		GFF25	0.15	-1.4
17,641	+		GFF25	0.17	-1.6
17,641	+		GFF25	0.17	-1.0
17,642	-		GFF25	0.17	-2.4
17,643	+		GFF25	0.17	-0.3
17,651	-		GFF25	0.19	+2.2
17,656	+		GFF25	0.20	-0.3
17,656	+		GFF25	0.20	-0.1
17,656	+		GFF25	0.20	-1.0
17,681	-		GFF25	0.25	-0.5
17,713	-		GFF25	0.32	-0.2
17,725	-		GFF25	0.35	+0.7
17,734	+		GFF25	0.37	-0.7
17,743	+		GFF25	0.39	-0.4
17,801	-		GFF25	0.52	-0.7
17,801	-		GFF25	0.52	+0.0
17,803	+		GFF25	0.52	-0.3
17,811	-		GFF25	0.54	+0.5
17,811	-		GFF25	0.54	+0.4
17,845	-		GFF25	0.62	+0.6
17,872	+		GFF25	0.68	-1.2
17,872	+		GFF25	0.68	-0.1
17,872	+		GFF25	0.68	-0.2
17,875	-		GFF25	0.68	+0.7
17,880	-		GFF25	0.69	-0.3
17,885	-		GFF25	0.70	+1.1
17,885	-		GFF25	0.70	-1.8
17,885	-		GFF25	0.70	-2.0
17,918	+		GFF25	0.78	-0.9
17,924	+		GFF25	0.79	-1.2
17,924	+		GFF25	0.79	-1.7
17,924	+		GFF25	0.79	-1.4
17,924	+		GFF25	0.79	-0.7
17,924	+		GFF25	0.79	-1.0
17,924	+		GFF25	0.79	-0.5
17,924	+		GFF25	0.79	+0.8
17,929	+		GFF25	0.80	-0.5
17,932	-		GFF25	0.81	-1.3
17,932	-		GFF25	0.81	-0.2
17,932	-		GFF25	0.81	+0.9
17,932	-		GFF25	0.81	-0.1
17,932	-		GFF25	0.81	-0.9
17,932	-		GFF25	0.81	-0.5
17,934	+		GFF25	0.81	-0.3
17,934	+		GFF25	0.81	-1.6
17,937	-		GFF25	0.82	-0.8
17,937	-		GFF25	0.82	+0.9
17,937	-		GFF25	0.82	-0.3
17,937	-		GFF25	0.82	-0.1
17,937	-		GFF25	0.82	+1.0
17,942	-		GFF25	0.83	-0.2
17,942	-		GFF25	0.83	-2.2
17,942	-		GFF25	0.83	+0.2
17,951	-		GFF25	0.85	-0.2
18,013	+				-0.0
18,013	+				-0.6
18,022	+				+0.9
18,022	+				-0.2
18,030	-				+0.8
18,030	-				-1.0
18,040	-				+0.5
18,041	-				-1.2
18,045	+				+0.3
18,127	-				-0.7
18,128	+				-1.4
18,128	+				-0.5
18,136	-				-0.7
18,158	-				-1.6
18,165	+				-1.5
18,165	+				-1.8
18,165	+				+0.6
18,170	+				+0.8
18,173	-				+0.1
18,173	-				-1.3
18,173	-				+0.1
18,173	-				-0.0
18,173	-				-0.1
18,173	-				-0.2
18,181	+				+0.3
18,189	-				+0.8
18,198	+				+0.8
18,198	+				-1.0
18,198	+				-0.6
18,203	+				+1.5
18,206	-				+0.3
18,208	+				+2.3
18,208	+				+1.2
18,208	+				-0.6
18,211	-				-0.5
18,225	-				-0.2
18,238	+				+0.8
18,246	-				+0.9
18,256	-				-0.3
18,256	-				+0.2
18,258	+				-0.1
18,261	-				+1.1
18,261	-				+0.7
18,261	-				-0.7
18,266	-				+0.4
18,271	-				+1.0
18,275	+				-2.3
18,295	-				-1.0
18,309	+				-0.5
18,309	+				-0.5
18,309	+				+0.4
18,309	+				-1.0
18,309	+				-0.3
18,309	+				+1.0
18,314	+				-0.4
18,314	+				-0.4
18,317	-				-0.2
18,322	-				+0.4
18,363	+				-0.5
18,363	+				+1.5
18,371	-				-0.9
18,392	+				-0.1
18,405	-				+0.2
18,415	-				+0.2
18,420	+				+0.4
18,428	-				+2.0
18,428	-				-0.7
18,430	+				-0.9
18,431	+				-0.4
18,436	+				+0.9
18,438	-				-1.1
18,438	-				+0.4
18,450	-				-0.1
18,488	+				-0.5
18,488	+				-0.3
18,488	+				+0.2
18,488	+				-1.0
18,488	+				-0.2
18,488	+				-0.3
18,488	+				-0.4
18,488	+				+0.1
18,488	+				-0.2
18,488	+				-0.7
18,493	+				-0.3
18,496	-				-1.6
18,496	-				+0.5
18,496	-				+1.3
18,496	-				-0.6
18,496	-				-1.4
18,496	-				-0.4
18,496	-				-1.0
18,496	-				-1.4
18,496	-				+1.4
18,496	-				-1.4
18,496	-				-1.2
18,496	-				-0.2
18,496	-				-0.6
18,496	-				+0.3
18,496	-				+0.1
18,496	-				+1.0
18,496	-				+0.5
18,496	-				-0.5
18,496	-				-0.8
18,544	+				+0.8
18,544	+				+0.6
18,544	+				+0.4
18,544	+				-0.2
18,544	+				-0.6
18,552	-				-0.1
18,552	-				-0.2
18,552	-				+0.9
18,552	-				-0.9
18,552	-				-0.7
18,552	-				-0.5
18,552	-				-0.6
18,562	-				-1.1
18,584	-				-1.5
18,585	-				+0.6
18,594	+				-1.3
18,598	-				+0.0
18,614	+				+1.0
18,638	+				-0.5
18,653	+				-1.0
18,653	+				-0.1
18,653	+				-1.1
18,661	-				-2.1
18,688	-				-0.6
18,697	+				+1.4
18,699	-				-0.7
18,705	-		GFF26	0.10	-1.0
18,733	+		GFF26	0.10	-0.8
18,741	-		GFF26	0.11	+0.8
18,742	-		GFF26	0.11	-0.2
18,760	-		GFF26	0.11	+0.6
18,788	+		GFF26	0.11	+0.1
18,788	+		GFF26	0.11	-0.8
18,795	+		GFF26	0.11	-0.3
18,796	-		GFF26	0.11	+0.6
18,802	-		GFF26	0.11	-1.5
18,803	-		GFF26	0.11	-0.5
18,807	+		GFF26	0.11	-1.0
18,815	-		GFF26	0.12	+0.8
18,820	+		GFF26	0.12	-0.4
18,829	+		GFF26	0.12	+1.8
18,829	+		GFF26	0.12	-1.9
18,829	+		GFF26	0.12	-1.2
18,829	+		GFF26	0.12	+0.5
18,829	+		GFF26	0.12	-0.3
18,829	+		GFF26	0.12	+1.0
18,837	-		GFF26	0.12	-0.3
18,837	-		GFF26	0.12	+0.8
18,837	-		GFF26	0.12	+0.6
18,837	-		GFF26	0.12	-0.5
18,837	-		GFF26	0.12	+0.5
18,841	+		GFF26	0.12	-1.1
18,885	+		GFF26	0.13	-0.1
18,885	+		GFF26	0.13	+0.0
18,892	+		GFF26	0.13	-1.0
18,900	-		GFF26	0.13	+0.6
18,900	-		GFF26	0.13	-1.8
18,900	-		GFF26	0.13	-0.5
18,902	-		GFF26	0.13	+0.8
18,902	-		GFF26	0.13	-1.1
18,909	+		GFF26	0.13	-1.3
18,909	+		GFF26	0.13	-0.1
18,909	+		GFF26	0.13	-0.1
18,917	-		GFF26	0.13	-0.2
18,917	-		GFF26	0.13	+0.8
18,919	+		GFF26	0.13	-1.3
18,919	+		GFF26	0.13	-0.3
18,932	+		GFF26	0.13	+0.9
18,932	+		GFF26	0.13	-0.2
18,932	+		GFF26	0.13	-1.0
18,932	+		GFF26	0.13	-0.5
18,932	+		GFF26	0.13	-2.4
18,932	+		GFF26	0.13	-0.6
18,940	-		GFF26	0.13	-0.3
18,940	-		GFF26	0.13	-0.9
18,940	-		GFF26	0.13	-0.5
18,940	-		GFF26	0.13	+0.1
18,940	-		GFF26	0.13	-0.4
18,940	-		GFF26	0.13	-1.8
18,940	-		GFF26	0.13	+0.5
18,942	+		GFF26	0.13	-1.2
18,945	-		GFF26	0.13	-0.0
18,945	-		GFF26	0.13	+1.5
19,006	+		GFF26	0.14	-0.2
19,012	+		GFF26	0.14	-0.7
19,014	-		GFF26	0.14	+0.9
19,014	-		GFF26	0.14	-0.3