Strain Fitness in Sphingobium sp. HT1-2 around GFF2462

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,483,102	+				-0.4
2,483,155	-				-1.1
2,483,166	+				+1.8
2,483,166	+				+0.6
2,483,196	+				-0.5
2,483,217	+				-1.0
2,483,220	-				+0.6
2,483,222	+				+0.1
2,483,226	-				-0.3
2,483,272	-				-0.3
2,483,277	-				+1.4
2,483,286	+		GFF2461	0.12	-1.6
2,483,298	+		GFF2461	0.15	-0.4
2,483,308	+		GFF2461	0.18	-0.3
2,483,316	-		GFF2461	0.20	-0.9
2,483,316	-		GFF2461	0.20	-0.6
2,483,316	-		GFF2461	0.20	+0.6
2,483,338	+		GFF2461	0.26	+0.4
2,483,338	+		GFF2461	0.26	+0.9
2,483,338	+		GFF2461	0.26	-0.8
2,483,338	+		GFF2461	0.26	-0.3
2,483,338	+		GFF2461	0.26	+0.1
2,483,346	-		GFF2461	0.29	+1.9
2,483,346	-		GFF2461	0.29	+0.3
2,483,346	-		GFF2461	0.29	-1.0
2,483,346	-		GFF2461	0.29	-1.4
2,483,346	-		GFF2461	0.29	-0.8
2,483,346	-		GFF2461	0.29	+0.5
2,483,346	-		GFF2461	0.29	-0.7
2,483,346	-		GFF2461	0.29	-0.1
2,483,390	+		GFF2461	0.41	-0.4
2,483,395	+		GFF2461	0.42	+0.2
2,483,395	+		GFF2461	0.42	-1.3
2,483,395	+		GFF2461	0.42	-0.1
2,483,396	-		GFF2461	0.43	-1.7
2,483,396	-		GFF2461	0.43	-0.4
2,483,396	-		GFF2461	0.43	+0.9
2,483,400	+		GFF2461	0.44	-1.1
2,483,405	+		GFF2461	0.45	-1.1
2,483,405	+		GFF2461	0.45	-0.5
2,483,405	+		GFF2461	0.45	-0.8
2,483,413	-		GFF2461	0.47	-0.2
2,483,413	-		GFF2461	0.47	-1.7
2,483,413	-		GFF2461	0.47	-1.2
2,483,413	-		GFF2461	0.47	-1.3
2,483,413	-		GFF2461	0.47	-2.2
2,483,413	-		GFF2461	0.47	+1.0
2,483,413	-		GFF2461	0.47	+0.0
2,483,413	-		GFF2461	0.47	+0.7
2,483,413	-		GFF2461	0.47	-1.3
2,483,414	-		GFF2461	0.48	+0.4
2,483,427	-		GFF2461	0.51	-1.4
2,483,434	+		GFF2461	0.53	-0.7
2,483,434	+		GFF2461	0.53	+1.4
2,483,440	+		GFF2461	0.55	-0.6
2,483,442	-		GFF2461	0.55	-2.0
2,483,442	-		GFF2461	0.55	+0.7
2,483,442	-		GFF2461	0.55	+0.0
2,483,456	+		GFF2461	0.59	-0.1
2,483,468	-		GFF2461	0.63	-0.1
2,483,468	-		GFF2461	0.63	+1.1
2,483,496	-		GFF2461	0.71	+1.1
2,483,510	-		GFF2461	0.75	-0.8
2,483,547	-		GFF2461	0.85	+0.5
2,483,560	-		GFF2461	0.89	+0.2
2,483,585	+				-1.4
2,483,600	+				-1.6
2,483,608	-				-0.4
2,483,610	+				-1.0
2,483,610	+				-1.4
2,483,615	+				-0.8
2,483,618	-				-0.6
2,483,618	-				-0.0
2,483,618	-				-0.6
2,483,618	-				-0.1
2,483,618	-				+0.9
2,483,619	+				+0.2
2,483,632	-				+0.1
2,483,654	+				-2.4
2,483,654	+				-1.3
2,483,654	+				-0.9
2,483,658	-				-0.4
2,483,662	-				+0.1
2,483,662	-				+0.6
2,483,662	-				-0.6
2,483,664	-				-1.0
2,483,683	-				-1.4
2,483,690	+				-1.3
2,483,690	+				-0.7
2,483,695	+				-1.0
2,483,695	+				-0.1
2,483,695	+				-1.5
2,483,695	+				+0.8
2,483,698	-				-1.2
2,483,698	-				-0.5
2,483,700	+				-0.4
2,483,700	+				-0.7
2,483,700	+				-0.4
2,483,703	-				+1.3
2,483,703	-				+0.6
2,483,703	-				-0.6
2,483,703	-				-1.7
2,483,703	-				-0.6
2,483,703	-				+0.7
2,483,708	-				-0.8
2,483,721	+				+0.3
2,483,739	-				-1.7
2,483,739	-				+0.3
2,483,748	-				-1.5
2,483,767	+				+1.9
2,483,772	+				-0.5
2,483,776	+				+0.9
2,483,780	-				-0.5
2,483,842	+		GFF2462	0.17	-1.2
2,483,842	+		GFF2462	0.17	-1.4
2,483,842	+		GFF2462	0.17	-1.3
2,483,842	+		GFF2462	0.17	-0.4
2,483,842	+		GFF2462	0.17	+0.6
2,483,842	+		GFF2462	0.17	-1.3
2,483,842	+		GFF2462	0.17	-0.3
2,483,850	+		GFF2462	0.18	+0.8
2,483,850	-		GFF2462	0.18	-0.1
2,483,850	-		GFF2462	0.18	-1.1
2,483,850	-		GFF2462	0.18	-1.1
2,483,850	-		GFF2462	0.18	-0.7
2,483,850	-		GFF2462	0.18	+1.7
2,483,850	-		GFF2462	0.18	+0.9
2,483,850	-		GFF2462	0.18	+0.2
2,483,850	-		GFF2462	0.18	-0.5
2,483,850	-		GFF2462	0.18	-1.3
2,483,852	+		GFF2462	0.19	+0.1
2,483,852	+		GFF2462	0.19	-1.4
2,483,852	+		GFF2462	0.19	-0.1
2,483,858	-		GFF2462	0.19	-1.5
2,483,862	+		GFF2462	0.20	-0.8
2,483,862	+		GFF2462	0.20	+1.4
2,483,862	+		GFF2462	0.20	-0.1
2,483,862	+		GFF2462	0.20	-0.1
2,483,881	+		GFF2462	0.22	-0.3
2,483,889	-		GFF2462	0.23	+0.4
2,483,892	+		GFF2462	0.24	-1.5
2,483,900	+		GFF2462	0.25	+1.1
2,483,907	+		GFF2462	0.26	-1.4
2,483,908	-		GFF2462	0.26	-1.6
2,483,923	+		GFF2462	0.28	+0.7
2,483,959	+		GFF2462	0.32	-1.2
2,483,959	+		GFF2462	0.32	-1.8
2,483,965	-		GFF2462	0.33	-0.9
2,483,967	+		GFF2462	0.33	+0.3
2,483,967	-		GFF2462	0.33	-0.5
2,483,976	+		GFF2462	0.34	-0.8
2,483,992	-		GFF2462	0.36	-1.6
2,484,003	-		GFF2462	0.38	-0.8
2,484,050	-		GFF2462	0.44	-0.1
2,484,080	+		GFF2462	0.47	+0.5
2,484,094	-		GFF2462	0.49	+0.9
2,484,113	-		GFF2462	0.52	-2.6
2,484,134	+		GFF2462	0.54	-1.1
2,484,147	-		GFF2462	0.56	-1.8
2,484,161	-		GFF2462	0.58	-0.9
2,484,164	-		GFF2462	0.58	-1.8
2,484,166	-		GFF2462	0.58	-0.9
2,484,168	+		GFF2462	0.58	-0.3
2,484,176	-		GFF2462	0.59	-1.3
2,484,178	+		GFF2462	0.60	-1.1
2,484,178	+		GFF2462	0.60	-0.6
2,484,195	+		GFF2462	0.62	-0.8
2,484,212	+		GFF2462	0.64	-0.3
2,484,213	+		GFF2462	0.64	-1.7
2,484,221	-		GFF2462	0.65	+0.4
2,484,231	+		GFF2462	0.66	+0.9
2,484,239	-		GFF2462	0.67	-1.7
2,484,240	-		GFF2462	0.68	-0.8
2,484,258	-		GFF2462	0.70	-0.8
2,484,270	-		GFF2462	0.71	-1.6
2,484,337	-		GFF2462	0.80	-0.1
2,484,362	+		GFF2462	0.83	-0.6
2,484,384	+		GFF2462	0.86	-1.4
2,484,384	+		GFF2462	0.86	-2.4
2,484,403	-		GFF2462	0.88	-0.1
2,484,404	-		GFF2462	0.88	-0.1
2,484,425	-				+1.5
2,484,450	-				-1.7
2,484,466	+				+0.1
2,484,489	-				+0.7
2,484,489	-				-1.2
2,484,491	+				+1.0
2,484,491	+				+1.2
2,484,491	+				-0.5
2,484,497	-				-1.6
2,484,500	-				-2.5
2,484,502	+				-1.3
2,484,505	-				-0.3
2,484,510	-				-1.0
2,484,512	+				-0.4
2,484,520	-				+0.3
2,484,525	+				+1.2
2,484,525	+				-0.7
2,484,533	-				-1.7
2,484,533	-				+0.0
2,484,533	-				-0.5
2,484,569	-				+0.7
2,484,585	-				-1.9
2,484,587	+				-0.5
2,484,587	+				-1.1
2,484,595	-				-0.3
2,484,602	+				+0.7
2,484,602	+				-1.3
2,484,610	+				-2.4
2,484,610	+				-0.3
2,484,610	+				-1.7
2,484,610	+				-0.0
2,484,610	+				+0.5
2,484,610	+				-0.8
2,484,610	+				-0.8
2,484,610	+				-1.1
2,484,610	+				-1.3
2,484,610	-				-0.6
2,484,610	-				+0.9
2,484,610	-				+1.4
2,484,611	-				-1.9
2,484,618	-				-0.4
2,484,618	-				-1.4
2,484,618	-				+0.3
2,484,618	-				-0.1
2,484,618	-				-0.4
2,484,618	-				-0.7
2,484,618	-				-1.5
2,484,618	-				-1.0
2,484,618	-				-0.3
2,484,618	-				+0.1
2,484,618	-				-0.2
2,484,657	+				+0.7
2,484,668	-				-0.6
2,484,673	+				+0.2
2,484,673	+				+1.3
2,484,673	+				+0.7
2,484,673	+				-2.7
2,484,675	+				+0.3
2,484,681	-				-0.2
2,484,694	+		GFF2463	0.11	-0.6
2,484,702	-		GFF2463	0.11	-2.1
2,484,707	+		GFF2463	0.11	-1.6
2,484,709	-		GFF2463	0.12	-1.1
2,484,712	+		GFF2463	0.12	-1.8
2,484,742	+		GFF2463	0.14	-1.0
2,484,769	-		GFF2463	0.16	-0.5
2,484,801	+		GFF2463	0.18	-0.7
2,484,805	+		GFF2463	0.18	-1.0
2,484,816	+		GFF2463	0.19	-1.3
2,484,825	+		GFF2463	0.19	+0.3
2,484,843	+		GFF2463	0.21	-1.5
2,484,843	+		GFF2463	0.21	-0.8
2,484,846	-		GFF2463	0.21	-1.2
2,484,848	+		GFF2463	0.21	+0.4
2,484,848	+		GFF2463	0.21	-1.8
2,484,851	-		GFF2463	0.21	-0.4
2,484,856	-		GFF2463	0.21	+0.8
2,484,857	-		GFF2463	0.22	-1.3
2,484,880	-		GFF2463	0.23	+0.3
2,484,989	-		GFF2463	0.30	-0.6
2,484,990	-		GFF2463	0.31	-1.4
2,484,990	-		GFF2463	0.31	+0.7
2,484,990	-		GFF2463	0.31	-0.1
2,484,992	+		GFF2463	0.31	+0.4
2,484,996	-		GFF2463	0.31	+0.1
2,485,008	-		GFF2463	0.32	-1.2
2,485,017	+		GFF2463	0.32	-2.1
2,485,017	+		GFF2463	0.32	-0.7
2,485,017	+		GFF2463	0.32	+1.0
2,485,017	+		GFF2463	0.32	-0.8
2,485,024	-		GFF2463	0.33	-1.4
2,485,036	+		GFF2463	0.34	-2.0
2,485,036	+		GFF2463	0.34	+0.1
2,485,044	-		GFF2463	0.34	-0.8
2,485,044	-		GFF2463	0.34	+0.3
2,485,058	-		GFF2463	0.35	+0.3
2,485,058	-		GFF2463	0.35	+0.6
2,485,058	-		GFF2463	0.35	-0.7
2,485,073	-		GFF2463	0.36	+0.8
2,485,084	+		GFF2463	0.37	-1.4
2,485,102	-		GFF2463	0.38	+0.6
2,485,107	-		GFF2463	0.38	+0.5
2,485,135	+		GFF2463	0.40	-0.3
2,485,135	+		GFF2463	0.40	+0.7
2,485,135	+		GFF2463	0.40	-0.1
2,485,135	+		GFF2463	0.40	-0.6
2,485,143	-		GFF2463	0.41	+0.5
2,485,143	-		GFF2463	0.41	+0.9
2,485,143	-		GFF2463	0.41	+0.3
2,485,143	-		GFF2463	0.41	-0.6
2,485,143	-		GFF2463	0.41	-0.5
2,485,143	-		GFF2463	0.41	-1.8
2,485,162	+		GFF2463	0.42	+0.2
2,485,162	+		GFF2463	0.42	+0.6
2,485,165	-		GFF2463	0.42	-0.9
2,485,170	-		GFF2463	0.43	-1.5
2,485,170	-		GFF2463	0.43	+0.9
2,485,170	-		GFF2463	0.43	+2.2
2,485,170	-		GFF2463	0.43	-1.6
2,485,170	-		GFF2463	0.43	+0.5
2,485,170	-		GFF2463	0.43	+0.0
2,485,170	-		GFF2463	0.43	-1.1
2,485,235	+		GFF2463	0.47	-0.8
2,485,243	-		GFF2463	0.48	+1.7
2,485,250	+		GFF2463	0.48	+0.1
2,485,259	-		GFF2463	0.49	-0.2
2,485,273	-		GFF2463	0.50	-0.6
2,485,273	-		GFF2463	0.50	-0.4
2,485,285	-		GFF2463	0.50	-1.1
2,485,287	+		GFF2463	0.51	-0.9
2,485,287	+		GFF2463	0.51	-0.3
2,485,287	+		GFF2463	0.51	-0.6
2,485,295	-		GFF2463	0.51	-0.1
2,485,295	-		GFF2463	0.51	-0.8
2,485,295	-		GFF2463	0.51	-0.4
2,485,295	-		GFF2463	0.51	-0.7
2,485,295	-		GFF2463	0.51	-0.1
2,485,295	-		GFF2463	0.51	+0.5
2,485,297	+		GFF2463	0.51	-0.5
2,485,297	+		GFF2463	0.51	-1.5
2,485,297	+		GFF2463	0.51	-0.4
2,485,299	+		GFF2463	0.51	-0.1
2,485,305	-		GFF2463	0.52	-0.8
2,485,305	-		GFF2463	0.52	-0.8
2,485,305	-		GFF2463	0.52	-1.7
2,485,305	-		GFF2463	0.52	+1.2
2,485,305	-		GFF2463	0.52	-0.7
2,485,305	-		GFF2463	0.52	-1.0
2,485,305	-		GFF2463	0.52	+0.3
2,485,305	-		GFF2463	0.52	-0.1
2,485,338	-		GFF2463	0.54	+0.3
2,485,348	+		GFF2463	0.55	+1.1
2,485,348	+		GFF2463	0.55	-2.6
2,485,356	-		GFF2463	0.55	-0.5
2,485,362	-		GFF2463	0.56	+1.4
2,485,362	-		GFF2463	0.56	-1.1
2,485,404	+		GFF2463	0.58	-0.4
2,485,420	+		GFF2463	0.59	-0.9
2,485,425	+		GFF2463	0.60	-0.6
2,485,436	-		GFF2463	0.61	-0.1
2,485,442	+		GFF2463	0.61	-0.8
2,485,442	+		GFF2463	0.61	-0.7
2,485,450	-		GFF2463	0.61	-1.7
2,485,450	-		GFF2463	0.61	-2.0
2,485,450	-		GFF2463	0.61	-2.2
2,485,450	-		GFF2463	0.61	-0.8
2,485,450	-		GFF2463	0.61	-0.7
2,485,451	-		GFF2463	0.62	-0.2
2,485,478	+		GFF2463	0.63	-0.5