Strain Fitness in Sphingobium sp. HT1-2 around GFF2414

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,430,935	+		GFF2411	0.11	-1.0
2,430,935	+		GFF2411	0.11	-1.5
2,430,935	+		GFF2411	0.11	+0.4
2,430,937	-		GFF2411	0.12	-0.5
2,430,952	+		GFF2411	0.15	-1.5
2,430,952	+		GFF2411	0.15	-0.4
2,430,960	-		GFF2411	0.17	-0.8
2,430,960	-		GFF2411	0.17	+0.1
2,430,963	+		GFF2411	0.18	+0.6
2,430,963	+		GFF2411	0.18	+1.4
2,430,963	+		GFF2411	0.18	-0.1
2,430,963	+		GFF2411	0.18	-0.4
2,430,971	-		GFF2411	0.20	-0.9
2,430,971	-		GFF2411	0.20	-1.1
2,430,971	-		GFF2411	0.20	-0.1
2,430,976	-		GFF2411	0.21	-1.2
2,430,985	+		GFF2411	0.24	-0.0
2,431,004	-		GFF2411	0.28	+0.9
2,431,008	-		GFF2411	0.29	-0.9
2,431,014	-		GFF2411	0.31	-0.9
2,431,025	+		GFF2411	0.33	-0.9
2,431,025	+		GFF2411	0.33	-0.6
2,431,025	+		GFF2411	0.33	+0.6
2,431,033	-		GFF2411	0.35	+0.5
2,431,033	-		GFF2411	0.35	-1.7
2,431,033	-		GFF2411	0.35	+0.6
2,431,033	-		GFF2411	0.35	-0.4
2,431,041	+		GFF2411	0.37	-1.0
2,431,047	-		GFF2411	0.39	+0.9
2,431,054	+		GFF2411	0.40	+0.3
2,431,069	+		GFF2411	0.44	-0.7
2,431,069	+		GFF2411	0.44	+0.9
2,431,075	+		GFF2411	0.46	+1.3
2,431,077	-		GFF2411	0.46	+0.7
2,431,093	+		GFF2411	0.50	-0.0
2,431,093	+		GFF2411	0.50	-0.5
2,431,093	+		GFF2411	0.50	+0.6
2,431,093	+		GFF2411	0.50	-1.1
2,431,093	+		GFF2411	0.50	-0.9
2,431,101	-		GFF2411	0.52	-0.9
2,431,101	-		GFF2411	0.52	-1.3
2,431,101	-		GFF2411	0.52	+0.4
2,431,101	-		GFF2411	0.52	-2.0
2,431,101	-		GFF2411	0.52	-1.0
2,431,101	-		GFF2411	0.52	-0.4
2,431,101	-		GFF2411	0.52	+0.1
2,431,120	-		GFF2411	0.57	+0.2
2,431,126	-		GFF2411	0.58	-0.6
2,431,143	-		GFF2411	0.62	-0.4
2,431,145	-		GFF2411	0.63	+0.6
2,431,171	-		GFF2411	0.69	-0.3
2,431,172	-		GFF2411	0.69	-0.8
2,431,194	+		GFF2411	0.75	-1.0
2,431,195	-		GFF2411	0.75	+1.6
2,431,260	-				-0.9
2,431,265	-				-1.4
2,431,281	+				-0.3
2,431,281	+				-0.4
2,431,281	+				-0.1
2,431,283	+				-0.9
2,431,289	-				-1.4
2,431,289	-				-0.7
2,431,293	+				-0.7
2,431,293	+				+0.4
2,431,313	+				-0.1
2,431,313	+				-0.6
2,431,314	+				-1.9
2,431,324	+				-0.3
2,431,325	-				-0.4
2,431,332	+				+0.8
2,431,332	+				+0.4
2,431,332	+				-0.1
2,431,332	-				-0.3
2,431,340	-				-0.3
2,431,351	-				-0.7
2,431,353	-				-0.7
2,431,355	+				+0.4
2,431,355	+				-0.4
2,431,355	+				+0.9
2,431,355	+				+0.3
2,431,355	+				-1.8
2,431,357	+				-1.2
2,431,363	-				+0.0
2,431,363	-				+0.9
2,431,371	+				-0.6
2,431,451	-		GFF2412	0.40	-1.5
2,431,451	-		GFF2412	0.40	-1.4
2,431,452	+		GFF2412	0.40	-0.1
2,431,455	-		GFF2412	0.42	-1.9
2,431,455	-		GFF2412	0.42	-0.4
2,431,460	-		GFF2412	0.45	-0.1
2,431,478	+		GFF2412	0.54	+1.6
2,431,481	-		GFF2412	0.56	-1.0
2,431,486	-		GFF2412	0.59	-1.8
2,431,486	-		GFF2412	0.59	-1.3
2,431,491	+		GFF2412	0.61	-1.9
2,431,494	+		GFF2412	0.63	-0.6
2,431,496	+		GFF2412	0.64	-1.6
2,431,496	+		GFF2412	0.64	-0.5
2,431,496	+		GFF2412	0.64	-0.3
2,431,499	-		GFF2412	0.66	-0.4
2,431,504	-		GFF2412	0.68	+0.4
2,431,540	+		GFF2412	0.88	-0.7
2,431,579	+				+0.6
2,431,615	+				-1.7
2,431,615	+				-0.7
2,431,616	+				+1.5
2,431,625	+				+0.9
2,431,633	-				+2.4
2,431,633	-				-1.6
2,431,633	-				-0.6
2,431,633	-				-1.0
2,431,635	+				+1.0
2,431,635	+				-1.1
2,431,635	+				-2.3
2,431,636	+				+0.3
2,431,643	-				-0.4
2,431,664	+				-0.3
2,431,664	-				+0.4
2,431,672	-				+0.6
2,431,680	+				+0.1
2,431,680	+				+0.9
2,431,701	-				-0.4
2,431,739	-		GFF2413	0.27	+1.1
2,431,788	-		GFF2413	0.57	-1.1
2,431,802	+		GFF2413	0.65	+0.4
2,431,802	+		GFF2413	0.65	-0.8
2,431,808	+		GFF2413	0.69	-0.1
2,431,826	-		GFF2413	0.80	-1.3
2,431,826	-		GFF2413	0.80	-1.7
2,431,847	+				+0.2
2,431,848	+				+0.7
2,431,856	-				+1.0
2,431,866	-				+0.2
2,431,946	+				-1.2
2,431,954	-				-1.4
2,431,961	-				-0.9
2,431,964	+				-0.6
2,431,974	-				-1.7
2,431,998	+				-1.1
2,432,026	+				-0.8
2,432,034	-				-0.4
2,432,060	+				-0.5
2,432,060	+				-0.1
2,432,068	-				+1.1
2,432,068	-				-1.5
2,432,068	-				-1.1
2,432,085	+		GFF2414	0.10	-2.3
2,432,117	-		GFF2414	0.12	+0.1
2,432,124	-		GFF2414	0.13	-0.9
2,432,131	+		GFF2414	0.13	-0.5
2,432,131	+		GFF2414	0.13	+0.7
2,432,136	+		GFF2414	0.14	-1.1
2,432,136	+		GFF2414	0.14	+0.6
2,432,139	-		GFF2414	0.14	+0.2
2,432,144	-		GFF2414	0.14	+0.3
2,432,149	-		GFF2414	0.15	+1.0
2,432,171	-		GFF2414	0.16	-1.0
2,432,171	-		GFF2414	0.16	-0.3
2,432,204	-		GFF2414	0.18	-1.8
2,432,230	+		GFF2414	0.20	-0.3
2,432,243	+		GFF2414	0.21	-1.9
2,432,243	+		GFF2414	0.21	-0.1
2,432,253	+		GFF2414	0.22	-2.0
2,432,258	+		GFF2414	0.22	-1.0
2,432,261	-		GFF2414	0.22	-0.3
2,432,264	+		GFF2414	0.22	-0.0
2,432,266	-		GFF2414	0.23	-0.4
2,432,269	+		GFF2414	0.23	-1.8
2,432,272	-		GFF2414	0.23	-1.1
2,432,289	-		GFF2414	0.24	-1.3
2,432,330	-		GFF2414	0.27	+1.3
2,432,381	-		GFF2414	0.30	-1.6
2,432,411	+		GFF2414	0.32	-0.7
2,432,441	+		GFF2414	0.34	-0.8
2,432,457	-		GFF2414	0.35	-0.7
2,432,473	+		GFF2414	0.37	-1.2
2,432,473	+		GFF2414	0.37	+0.0
2,432,492	+		GFF2414	0.38	+0.2
2,432,492	+		GFF2414	0.38	-1.1
2,432,492	+		GFF2414	0.38	+0.8
2,432,492	+		GFF2414	0.38	-1.3
2,432,500	-		GFF2414	0.38	-1.9
2,432,500	-		GFF2414	0.38	-0.6
2,432,500	-		GFF2414	0.38	-0.0
2,432,500	-		GFF2414	0.38	+1.7
2,432,506	+		GFF2414	0.39	-0.5
2,432,508	+		GFF2414	0.39	+0.6
2,432,508	+		GFF2414	0.39	+0.9
2,432,516	-		GFF2414	0.39	+0.4
2,432,516	-		GFF2414	0.39	-1.0
2,432,516	-		GFF2414	0.39	+1.1
2,432,516	-		GFF2414	0.39	-0.1
2,432,516	-		GFF2414	0.39	-0.1
2,432,537	+		GFF2414	0.41	-1.5
2,432,538	-		GFF2414	0.41	-0.2
2,432,545	+		GFF2414	0.41	-1.6
2,432,547	+		GFF2414	0.42	-0.5
2,432,555	-		GFF2414	0.42	+0.6
2,432,555	-		GFF2414	0.42	-1.4
2,432,555	-		GFF2414	0.42	-2.0
2,432,555	-		GFF2414	0.42	+0.4
2,432,555	-		GFF2414	0.42	-1.4
2,432,600	+		GFF2414	0.45	+1.1
2,432,602	+		GFF2414	0.45	-0.7
2,432,626	+		GFF2414	0.47	-0.8
2,432,678	-		GFF2414	0.50	-1.3
2,432,681	+		GFF2414	0.51	+0.5
2,432,681	+		GFF2414	0.51	-0.1
2,432,689	-		GFF2414	0.51	-0.7
2,432,689	-		GFF2414	0.51	+0.4
2,432,689	-		GFF2414	0.51	+1.1
2,432,704	-		GFF2414	0.52	-0.2
2,432,710	-		GFF2414	0.53	+2.3
2,432,713	+		GFF2414	0.53	+0.3
2,432,723	+		GFF2414	0.53	+1.1
2,432,727	+		GFF2414	0.54	+0.1
2,432,727	+		GFF2414	0.54	-1.0
2,432,727	+		GFF2414	0.54	-0.6
2,432,727	+		GFF2414	0.54	-1.1
2,432,727	+		GFF2414	0.54	-0.6
2,432,727	+		GFF2414	0.54	-0.9
2,432,727	+		GFF2414	0.54	+0.9
2,432,727	+		GFF2414	0.54	-1.9
2,432,727	+		GFF2414	0.54	+0.8
2,432,727	+		GFF2414	0.54	-2.4
2,432,727	+		GFF2414	0.54	-0.2
2,432,727	+		GFF2414	0.54	+0.9
2,432,727	+		GFF2414	0.54	+0.7
2,432,735	-		GFF2414	0.54	-0.1
2,432,735	-		GFF2414	0.54	-2.0
2,432,735	-		GFF2414	0.54	+1.1
2,432,735	-		GFF2414	0.54	-0.9
2,432,735	-		GFF2414	0.54	-0.3
2,432,736	-		GFF2414	0.54	+0.7
2,432,737	+		GFF2414	0.54	+0.6
2,432,737	+		GFF2414	0.54	-0.7
2,432,737	+		GFF2414	0.54	-0.6
2,432,737	+		GFF2414	0.54	+0.9
2,432,740	-		GFF2414	0.55	-0.4
2,432,740	-		GFF2414	0.55	-0.4
2,432,745	-		GFF2414	0.55	+0.7
2,432,745	-		GFF2414	0.55	+1.0
2,432,745	-		GFF2414	0.55	-0.4
2,432,764	+		GFF2414	0.56	-0.8
2,432,772	-		GFF2414	0.57	-0.6
2,432,781	+		GFF2414	0.57	-0.7
2,432,781	+		GFF2414	0.57	-1.3
2,432,781	+		GFF2414	0.57	+0.2
2,432,781	+		GFF2414	0.57	-0.2
2,432,789	-		GFF2414	0.58	-0.3
2,432,789	-		GFF2414	0.58	+0.4
2,432,789	-		GFF2414	0.58	-1.5
2,432,789	-		GFF2414	0.58	+1.2
2,432,789	-		GFF2414	0.58	-1.0
2,432,796	+		GFF2414	0.58	-1.3
2,432,809	-		GFF2414	0.59	+0.6
2,432,820	-		GFF2414	0.60	-0.1
2,432,840	-		GFF2414	0.61	+0.5
2,432,968	+		GFF2414	0.70	+1.5
2,432,968	+		GFF2414	0.70	-0.2
2,432,971	-		GFF2414	0.70	+0.6
2,433,021	+		GFF2414	0.74	-0.6
2,433,028	+		GFF2414	0.74	-0.6
2,433,029	-		GFF2414	0.74	-0.8
2,433,048	-		GFF2414	0.75	+1.1
2,433,053	-		GFF2414	0.76	+1.3
2,433,124	-		GFF2414	0.81	+1.8
2,433,131	+		GFF2414	0.81	-1.1
2,433,131	+		GFF2414	0.81	-0.3
2,433,136	+		GFF2414	0.81	-0.0
2,433,139	-		GFF2414	0.82	-0.9
2,433,139	-		GFF2414	0.82	-0.9
2,433,141	+		GFF2414	0.82	-0.6
2,433,141	-		GFF2414	0.82	-0.9
2,433,177	-		GFF2414	0.84	+0.2
2,433,178	+		GFF2414	0.84	+0.0
2,433,182	-		GFF2414	0.84	-0.5
2,433,186	-		GFF2414	0.85	-0.3
2,433,207	+		GFF2414	0.86	-1.1
2,433,234	+		GFF2414	0.88	-1.8
2,433,236	-		GFF2414	0.88	-0.1
2,433,252	-		GFF2414	0.89	-1.1
2,433,261	-		GFF2414	0.90	-0.6
2,433,266	+				+0.1
2,433,287	+				-1.0
2,433,287	+				-0.4
2,433,287	+				-0.1
2,433,287	+				-1.5
2,433,287	+				-0.4
2,433,287	+				-1.5
2,433,287	+				-0.0
2,433,287	+				+0.2
2,433,287	+				-0.3
2,433,287	+				-0.7
2,433,292	+				+0.7
2,433,295	-				-1.6
2,433,295	-				+1.2
2,433,295	-				-0.6
2,433,295	-				-0.3
2,433,295	-				-0.7
2,433,295	-				+0.3
2,433,295	-				-1.0
2,433,295	-				-0.6
2,433,295	-				+0.4
2,433,295	-				-1.6
2,433,295	-				-0.4
2,433,295	-				-2.4
2,433,295	-				-1.3
2,433,295	-				+0.1
2,433,295	-				+1.1
2,433,295	-				-0.7
2,433,312	-				-0.8
2,433,337	+				-1.0
2,433,339	-				+1.9
2,433,386	-				-1.3
2,433,423	+				-1.4
2,433,423	-				-0.1
2,433,431	-				+1.4
2,433,431	-				-1.5
2,433,464	-				-0.1
2,433,475	-				-1.2