Strain Fitness in Sphingobium sp. HT1-2 around GFF2312

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,335,902	-				-1.3
2,335,902	-				+0.5
2,335,902	-				-0.1
2,335,904	+				+0.8
2,335,904	+				+0.5
2,335,910	+				-0.1
2,335,926	-				+0.4
2,335,951	+		GFF2310	0.14	+1.3
2,335,960	+		GFF2310	0.15	-1.4
2,335,960	+		GFF2310	0.15	-1.2
2,335,968	-		GFF2310	0.17	-0.2
2,335,968	-		GFF2310	0.17	-2.0
2,335,970	+		GFF2310	0.17	-0.9
2,335,978	-		GFF2310	0.18	-0.3
2,335,992	-		GFF2310	0.21	-1.2
2,335,994	+		GFF2310	0.21	-1.6
2,336,002	-		GFF2310	0.22	+0.4
2,336,002	-		GFF2310	0.22	-0.9
2,336,002	-		GFF2310	0.22	-1.1
2,336,002	-		GFF2310	0.22	-0.2
2,336,007	-		GFF2310	0.23	+1.3
2,336,007	-		GFF2310	0.23	-0.3
2,336,051	-		GFF2310	0.31	-0.5
2,336,064	-		GFF2310	0.33	+0.5
2,336,102	+		GFF2310	0.40	-0.7
2,336,169	-		GFF2310	0.51	-0.5
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	+0.7
2,336,177	+		GFF2310	0.53	-1.5
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	-0.4
2,336,177	+		GFF2310	0.53	-0.5
2,336,177	+		GFF2310	0.53	+0.2
2,336,177	+		GFF2310	0.53	-0.8
2,336,177	+		GFF2310	0.53	-0.2
2,336,177	+		GFF2310	0.53	+0.3
2,336,177	+		GFF2310	0.53	-1.2
2,336,177	+		GFF2310	0.53	-0.5
2,336,177	+		GFF2310	0.53	-0.5
2,336,177	+		GFF2310	0.53	-1.6
2,336,177	+		GFF2310	0.53	-0.1
2,336,177	+		GFF2310	0.53	-1.4
2,336,177	+		GFF2310	0.53	+1.2
2,336,177	+		GFF2310	0.53	-1.2
2,336,177	+		GFF2310	0.53	-0.7
2,336,177	+		GFF2310	0.53	-0.5
2,336,183	-		GFF2310	0.54	-1.0
2,336,185	-		GFF2310	0.54	-0.3
2,336,185	-		GFF2310	0.54	-0.8
2,336,185	-		GFF2310	0.54	+0.6
2,336,185	-		GFF2310	0.54	-1.2
2,336,185	-		GFF2310	0.54	-0.3
2,336,185	-		GFF2310	0.54	-2.0
2,336,185	-		GFF2310	0.54	+0.1
2,336,185	-		GFF2310	0.54	-0.8
2,336,185	-		GFF2310	0.54	-1.4
2,336,185	-		GFF2310	0.54	-0.8
2,336,185	-		GFF2310	0.54	-0.6
2,336,250	+		GFF2310	0.65	+0.7
2,336,250	+		GFF2310	0.65	+0.8
2,336,252	+		GFF2310	0.66	-0.8
2,336,252	+		GFF2310	0.66	-0.8
2,336,256	-		GFF2310	0.66	-0.6
2,336,263	+		GFF2310	0.68	-1.3
2,336,271	-		GFF2310	0.69	+0.2
2,336,281	-		GFF2310	0.71	+0.1
2,336,310	-		GFF2310	0.76	-1.1
2,336,331	+		GFF2310	0.79	-2.3
2,336,331	+		GFF2310	0.79	-1.6
2,336,381	+		GFF2310	0.88	+0.7
2,336,400	-				-1.2
2,336,535	+				-0.6
2,336,543	-				-0.7
2,336,543	-				-0.7
2,336,543	-				-1.3
2,336,543	-				-1.9
2,336,545	+				+1.5
2,336,557	-				-0.0
2,336,557	-				+0.0
2,336,568	-		GFF2311	0.13	-0.6
2,336,581	+		GFF2311	0.17	-0.8
2,336,623	+		GFF2311	0.29	-0.1
2,336,685	-		GFF2311	0.47	-0.6
2,336,722	+		GFF2311	0.57	-0.3
2,336,757	-		GFF2311	0.68	-0.5
2,336,812	+		GFF2311	0.83	-0.1
2,336,855	+				-2.9
2,336,855	+				-0.8
2,336,863	-				+0.5
2,336,863	-				-1.3
2,336,863	-				-0.1
2,336,863	-				-1.3
2,336,863	-				-1.5
2,336,875	-				-0.8
2,336,885	-				-1.0
2,336,970	+				+0.4
2,336,995	-				-0.5
2,337,000	+				+0.4
2,337,000	+				-0.1
2,337,000	+				+0.2
2,337,000	+				-1.1
2,337,000	+				-2.3
2,337,000	+				-0.4
2,337,000	+				+0.9
2,337,000	+				-0.1
2,337,000	+				-0.4
2,337,000	+				+0.2
2,337,000	+				+1.2
2,337,000	+				-1.0
2,337,008	-				-1.3
2,337,008	-				-1.1
2,337,008	-				-0.1
2,337,008	-				-1.4
2,337,008	-				-0.5
2,337,008	-				-0.8
2,337,008	-				+0.3
2,337,008	-				-0.5
2,337,008	-				-1.7
2,337,008	-				-1.0
2,337,008	-				-0.1
2,337,008	-				-1.5
2,337,008	-				+1.0
2,337,008	-				-1.0
2,337,008	-				-0.8
2,337,008	-				+1.5
2,337,038	-				+0.9
2,337,079	+				+0.1
2,337,091	+				+1.2
2,337,107	-		GFF2312	0.10	-0.1
2,337,109	-		GFF2312	0.11	+0.7
2,337,112	-		GFF2312	0.11	-0.3
2,337,114	+		GFF2312	0.11	-0.1
2,337,115	+		GFF2312	0.11	-0.1
2,337,115	+		GFF2312	0.11	-0.1
2,337,115	+		GFF2312	0.11	-0.0
2,337,117	-		GFF2312	0.11	-0.8
2,337,123	-		GFF2312	0.11	-1.2
2,337,151	-		GFF2312	0.13	-0.1
2,337,161	+		GFF2312	0.13	+0.3
2,337,161	+		GFF2312	0.13	-1.8
2,337,161	+		GFF2312	0.13	-0.4
2,337,161	+		GFF2312	0.13	-1.0
2,337,161	+		GFF2312	0.13	-0.9
2,337,161	+		GFF2312	0.13	+1.9
2,337,162	+		GFF2312	0.13	-1.4
2,337,162	+		GFF2312	0.13	-0.1
2,337,166	+		GFF2312	0.13	-1.4
2,337,166	+		GFF2312	0.13	-1.8
2,337,169	-		GFF2312	0.13	+0.1
2,337,169	-		GFF2312	0.13	-1.2
2,337,169	-		GFF2312	0.13	+0.6
2,337,169	-		GFF2312	0.13	-0.1
2,337,169	-		GFF2312	0.13	-1.0
2,337,169	-		GFF2312	0.13	-1.3
2,337,169	-		GFF2312	0.13	-1.4
2,337,169	-		GFF2312	0.13	-0.7
2,337,169	-		GFF2312	0.13	-1.8
2,337,169	-		GFF2312	0.13	+1.9
2,337,171	+		GFF2312	0.14	-0.4
2,337,171	+		GFF2312	0.14	-0.7
2,337,171	+		GFF2312	0.14	-0.3
2,337,171	+		GFF2312	0.14	+1.4
2,337,172	+		GFF2312	0.14	-0.4
2,337,174	-		GFF2312	0.14	-0.1
2,337,179	-		GFF2312	0.14	-0.3
2,337,206	-		GFF2312	0.15	-1.3
2,337,218	+		GFF2312	0.16	-0.9
2,337,218	+		GFF2312	0.16	-0.3
2,337,226	-		GFF2312	0.16	-1.8
2,337,226	-		GFF2312	0.16	-0.7
2,337,226	-		GFF2312	0.16	-0.1
2,337,228	+		GFF2312	0.16	-0.6
2,337,228	+		GFF2312	0.16	-1.1
2,337,228	+		GFF2312	0.16	-2.0
2,337,228	+		GFF2312	0.16	-1.4
2,337,228	+		GFF2312	0.16	+0.6
2,337,236	-		GFF2312	0.17	-1.2
2,337,236	-		GFF2312	0.17	+0.5
2,337,236	-		GFF2312	0.17	+0.9
2,337,236	-		GFF2312	0.17	-0.5
2,337,236	-		GFF2312	0.17	-2.3
2,337,243	-		GFF2312	0.17	-1.0
2,337,246	-		GFF2312	0.17	+0.9
2,337,254	+		GFF2312	0.18	-1.9
2,337,260	+		GFF2312	0.18	+0.4
2,337,260	+		GFF2312	0.18	-1.7
2,337,262	-		GFF2312	0.18	+1.1
2,337,268	-		GFF2312	0.18	-0.7
2,337,270	+		GFF2312	0.19	+0.3
2,337,270	+		GFF2312	0.19	-0.3
2,337,349	+		GFF2312	0.22	+2.0
2,337,349	-		GFF2312	0.22	-0.5
2,337,371	-		GFF2312	0.24	-1.0
2,337,380	+		GFF2312	0.24	+0.2
2,337,399	+		GFF2312	0.25	-0.4
2,337,409	+		GFF2312	0.25	-0.1
2,337,413	+		GFF2312	0.26	+1.0
2,337,417	-		GFF2312	0.26	-1.6
2,337,444	-		GFF2312	0.27	-0.7
2,337,466	-		GFF2312	0.28	-0.1
2,337,512	+		GFF2312	0.31	-0.5
2,337,515	-		GFF2312	0.31	+0.6
2,337,515	-		GFF2312	0.31	-1.7
2,337,515	-		GFF2312	0.31	-1.6
2,337,520	-		GFF2312	0.31	-2.1
2,337,525	-		GFF2312	0.31	-2.1
2,337,529	+		GFF2312	0.31	-0.1
2,337,532	-		GFF2312	0.31	-1.4
2,337,532	-		GFF2312	0.31	-0.1
2,337,532	-		GFF2312	0.31	-1.9
2,337,563	-		GFF2312	0.33	-0.4
2,337,597	+		GFF2312	0.35	-0.6
2,337,700	+		GFF2312	0.40	-0.0
2,337,700	+		GFF2312	0.40	+0.3
2,337,700	+		GFF2312	0.40	-0.1
2,337,708	-		GFF2312	0.40	-0.4
2,337,708	-		GFF2312	0.40	-0.1
2,337,708	-		GFF2312	0.40	-0.6
2,337,710	+		GFF2312	0.40	+0.9
2,337,752	-		GFF2312	0.42	-0.7
2,337,813	+		GFF2312	0.45	-0.1
2,337,813	+		GFF2312	0.45	-0.8
2,337,874	+		GFF2312	0.48	-0.3
2,337,874	+		GFF2312	0.48	-0.7
2,337,877	-		GFF2312	0.49	+0.4
2,337,887	+		GFF2312	0.49	+1.4
2,337,887	+		GFF2312	0.49	-0.5
2,337,887	+		GFF2312	0.49	-1.2
2,337,887	+		GFF2312	0.49	+0.7
2,337,887	+		GFF2312	0.49	+1.0
2,337,887	+		GFF2312	0.49	-0.4
2,337,895	-		GFF2312	0.50	+1.0
2,337,895	-		GFF2312	0.50	-0.8
2,337,907	+		GFF2312	0.50	-0.4
2,337,971	-		GFF2312	0.53	-1.1
2,337,988	-		GFF2312	0.54	-2.4
2,337,997	+		GFF2312	0.55	-1.1
2,338,035	+		GFF2312	0.56	-1.6
2,338,035	+		GFF2312	0.56	+0.0
2,338,040	+		GFF2312	0.57	-1.8
2,338,043	-		GFF2312	0.57	+0.7
2,338,043	-		GFF2312	0.57	-0.3
2,338,055	+		GFF2312	0.57	+1.4
2,338,058	-		GFF2312	0.58	+0.5
2,338,064	+		GFF2312	0.58	-1.3
2,338,101	+		GFF2312	0.60	+0.6
2,338,144	+		GFF2312	0.62	+0.4
2,338,184	-		GFF2312	0.64	-0.4
2,338,210	+		GFF2312	0.65	-0.4
2,338,248	+		GFF2312	0.67	-1.0
2,338,248	+		GFF2312	0.67	+0.3
2,338,251	-		GFF2312	0.67	-0.6
2,338,253	+		GFF2312	0.67	-1.0
2,338,256	-		GFF2312	0.67	-0.4
2,338,256	-		GFF2312	0.67	-1.4
2,338,256	-		GFF2312	0.67	-2.1
2,338,256	-		GFF2312	0.67	+0.6
2,338,261	-		GFF2312	0.68	-0.2
2,338,286	+		GFF2312	0.69	-0.6
2,338,303	+		GFF2312	0.70	-1.6
2,338,303	+		GFF2312	0.70	+0.9
2,338,303	+		GFF2312	0.70	+0.5
2,338,303	+		GFF2312	0.70	-0.4
2,338,311	-		GFF2312	0.70	-0.3
2,338,311	-		GFF2312	0.70	+1.1
2,338,331	-		GFF2312	0.71	-0.3
2,338,341	+		GFF2312	0.72	-0.9
2,338,341	+		GFF2312	0.72	-0.3
2,338,342	-		GFF2312	0.72	-0.1
2,338,349	-		GFF2312	0.72	-0.3
2,338,349	-		GFF2312	0.72	-0.7
2,338,394	-		GFF2312	0.74	+1.0
2,338,412	+		GFF2312	0.75	-0.9
2,338,412	+		GFF2312	0.75	-1.3
2,338,412	+		GFF2312	0.75	+0.2
2,338,412	+		GFF2312	0.75	+2.2
2,338,412	+		GFF2312	0.75	-0.6
2,338,415	-		GFF2312	0.75	+0.3
2,338,415	-		GFF2312	0.75	-1.1
2,338,415	-		GFF2312	0.75	+0.6
2,338,420	-		GFF2312	0.76	+1.7
2,338,420	-		GFF2312	0.76	-1.7
2,338,420	-		GFF2312	0.76	-1.2
2,338,420	-		GFF2312	0.76	+0.2
2,338,429	+		GFF2312	0.76	-1.8
2,338,437	-		GFF2312	0.76	+0.1
2,338,455	-		GFF2312	0.77	+1.1
2,338,479	+		GFF2312	0.78	-0.6
2,338,479	+		GFF2312	0.78	-0.6
2,338,479	+		GFF2312	0.78	-0.5
2,338,487	-		GFF2312	0.79	-1.1
2,338,487	-		GFF2312	0.79	+0.5
2,338,487	-		GFF2312	0.79	+0.3
2,338,515	+		GFF2312	0.80	-1.5
2,338,523	-		GFF2312	0.81	+1.7
2,338,537	-		GFF2312	0.81	-1.0
2,338,538	+		GFF2312	0.81	-0.1
2,338,538	+		GFF2312	0.81	-0.1
2,338,538	+		GFF2312	0.81	-0.4
2,338,538	+		GFF2312	0.81	+1.8
2,338,538	+		GFF2312	0.81	-1.8
2,338,538	+		GFF2312	0.81	-0.8
2,338,541	-		GFF2312	0.82	-0.7
2,338,546	-		GFF2312	0.82	+1.1
2,338,546	-		GFF2312	0.82	-0.8
2,338,546	-		GFF2312	0.82	-0.7
2,338,572	+		GFF2312	0.83	-0.5
2,338,572	+		GFF2312	0.83	-1.3
2,338,590	+		GFF2312	0.84	-1.3
2,338,600	+		GFF2312	0.84	-0.2
2,338,636	-		GFF2312	0.86	+0.5
2,338,638	-		GFF2312	0.86	-1.4
2,338,643	+		GFF2312	0.87	+1.6
2,338,651	-		GFF2312	0.87	-1.5
2,338,668	-		GFF2312	0.88	+0.5
2,338,673	+		GFF2312	0.88	-1.3
2,338,702	-		GFF2312	0.90	-2.0
2,338,748	-				-0.6
2,338,753	-				-1.1
2,338,762	-				-1.2
2,338,810	+				-0.8
2,338,836	+				-1.8
2,338,843	+				+1.7
2,338,851	-				+0.7
2,338,851	-				-1.4
2,338,851	-				+0.3
2,338,861	-				+1.3
2,338,865	+				-0.7
2,338,873	-				-0.1
2,338,881	-				-1.2
2,338,892	+				-0.6
2,338,897	+				+0.9
2,338,897	+				-0.1
2,338,900	-				-0.8
2,338,900	-				+0.3
2,338,900	-				-1.0
2,338,900	-				+1.2
2,338,900	-				+0.7
2,338,905	-				-0.4
2,338,905	-				+0.0
2,338,917	-				+0.7
2,338,922	-				-0.1
2,338,927	-				-1.0
2,338,943	-				-1.5
2,338,945	+				-0.5
2,338,945	+				+0.1
2,338,945	+				-0.1
2,338,945	+				-1.3
2,338,946	+				-0.8
2,338,953	-				-1.1
2,338,954	-				-0.6
2,338,984	-				-1.2
2,339,058	+		GFF2313	0.10	-0.8
2,339,066	-		GFF2313	0.11	+0.1
2,339,066	-		GFF2313	0.11	-0.9
2,339,066	-		GFF2313	0.11	+1.1
2,339,121	+		GFF2313	0.15	-1.6
2,339,127	-		GFF2313	0.15	-0.5
2,339,129	-		GFF2313	0.16	+0.7
2,339,147	-		GFF2313	0.17	-0.6
2,339,147	-		GFF2313	0.17	+1.3
2,339,147	-		GFF2313	0.17	+0.9
2,339,147	-		GFF2313	0.17	+0.2
2,339,193	-		GFF2313	0.20	+1.9
2,339,195	+		GFF2313	0.20	+0.1
2,339,203	-		GFF2313	0.21	-0.8
2,339,204	-		GFF2313	0.21	-1.8
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