Strain Fitness in Sphingobium sp. HT1-2 around GFF2290

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
2,314,911	-				-0.7
2,314,918	+				-0.8
2,314,921	-				-0.8
2,314,938	-				-0.7
2,314,948	-				-0.8
2,314,949	+				+0.2
2,314,949	+				-0.3
2,314,957	-				-0.1
2,314,966	+				+0.7
2,314,972	-				-0.4
2,315,020	-				+0.3
2,315,046	+				-0.4
2,315,085	-				-1.7
2,315,087	-				-2.0
2,315,089	+				-1.1
2,315,089	+				-0.5
2,315,095	-				-0.1
2,315,097	-				-0.8
2,315,105	+				-1.3
2,315,127	-				-0.4
2,315,129	+				+0.3
2,315,160	+		GFF2289	0.14	-1.5
2,315,206	+		GFF2289	0.20	-0.1
2,315,214	-		GFF2289	0.21	+0.8
2,315,244	+		GFF2289	0.25	+0.9
2,315,246	+		GFF2289	0.25	+0.8
2,315,246	+		GFF2289	0.25	+0.2
2,315,249	+		GFF2289	0.26	+0.3
2,315,257	+		GFF2289	0.27	+0.3
2,315,284	+		GFF2289	0.31	-1.9
2,315,310	-		GFF2289	0.34	-0.7
2,315,312	+		GFF2289	0.34	-1.3
2,315,312	+		GFF2289	0.34	+0.4
2,315,312	+		GFF2289	0.34	+0.3
2,315,312	+		GFF2289	0.34	+0.5
2,315,312	+		GFF2289	0.34	-1.9
2,315,312	+		GFF2289	0.34	-1.3
2,315,317	+		GFF2289	0.35	-0.8
2,315,317	+		GFF2289	0.35	+0.3
2,315,320	-		GFF2289	0.36	+0.0
2,315,320	-		GFF2289	0.36	+1.3
2,315,320	-		GFF2289	0.36	-0.1
2,315,320	-		GFF2289	0.36	+0.2
2,315,325	-		GFF2289	0.36	-1.1
2,315,372	+		GFF2289	0.43	-0.8
2,315,372	+		GFF2289	0.43	+0.4
2,315,374	+		GFF2289	0.43	-0.1
2,315,374	+		GFF2289	0.43	-0.4
2,315,379	+		GFF2289	0.44	+0.2
2,315,380	-		GFF2289	0.44	-0.1
2,315,380	-		GFF2289	0.44	-1.6
2,315,384	+		GFF2289	0.44	-0.6
2,315,385	-		GFF2289	0.44	+1.5
2,315,389	+		GFF2289	0.45	+1.5
2,315,392	+		GFF2289	0.45	-0.4
2,315,402	+		GFF2289	0.47	-2.2
2,315,402	+		GFF2289	0.47	-0.8
2,315,402	+		GFF2289	0.47	-0.4
2,315,402	+		GFF2289	0.47	+1.8
2,315,402	+		GFF2289	0.47	-1.8
2,315,402	+		GFF2289	0.47	+0.2
2,315,407	+		GFF2289	0.47	+0.0
2,315,407	+		GFF2289	0.47	-1.8
2,315,410	-		GFF2289	0.48	-0.5
2,315,427	-		GFF2289	0.50	+1.5
2,315,480	+		GFF2289	0.57	-0.4
2,315,488	-		GFF2289	0.59	+0.8
2,315,505	+		GFF2289	0.61	-0.4
2,315,505	+		GFF2289	0.61	-0.5
2,315,512	-		GFF2289	0.62	-1.0
2,315,532	+		GFF2289	0.65	+0.9
2,315,540	-		GFF2289	0.66	-0.6
2,315,577	-		GFF2289	0.71	-0.4
2,315,577	-		GFF2289	0.71	+0.7
2,315,579	+		GFF2289	0.71	-0.3
2,315,587	+		GFF2289	0.72	+0.0
2,315,623	+		GFF2289	0.77	-2.6
2,315,625	+		GFF2289	0.77	-0.5
2,315,626	-		GFF2289	0.78	-0.8
2,315,626	-		GFF2289	0.78	-0.4
2,315,628	+		GFF2289	0.78	-0.6
2,315,633	+		GFF2289	0.78	-0.7
2,315,636	-		GFF2289	0.79	-1.4
2,315,636	-		GFF2289	0.79	-0.4
2,315,636	-		GFF2289	0.79	-1.2
2,315,636	-		GFF2289	0.79	-0.6
2,315,641	-		GFF2289	0.80	-1.5
2,315,694	-		GFF2289	0.87	-1.1
2,315,731	-				-1.7
2,315,736	-				+0.8
2,315,759	-				-1.3
2,315,768	+				-0.3
2,315,776	-				-0.4
2,315,776	-				-1.9
2,315,852	+				-0.4
2,315,857	+				-2.4
2,315,865	+				-0.7
2,315,865	-				+0.6
2,315,872	-				+0.7
2,315,905	+				+0.5
2,315,929	-				-0.2
2,315,948	+				-0.4
2,315,948	+				+0.9
2,315,953	+				-0.1
2,315,953	+				-1.1
2,315,953	+				+0.7
2,315,961	-				-0.4
2,315,993	+				+0.1
2,315,996	-				-1.2
2,315,996	-				+0.7
2,315,999	-				-1.0
2,316,022	+				-1.5
2,316,090	-		GFF2290	0.15	+0.7
2,316,119	+		GFF2290	0.17	+1.1
2,316,142	-		GFF2290	0.19	-0.5
2,316,150	+		GFF2290	0.20	-1.1
2,316,152	-		GFF2290	0.20	-0.5
2,316,214	+		GFF2290	0.25	-0.0
2,316,214	+		GFF2290	0.25	-0.3
2,316,222	-		GFF2290	0.26	+1.3
2,316,237	+		GFF2290	0.27	-0.4
2,316,245	-		GFF2290	0.27	+0.6
2,316,245	-		GFF2290	0.27	-0.4
2,316,251	-		GFF2290	0.28	+0.1
2,316,279	-		GFF2290	0.30	+0.4
2,316,288	+		GFF2290	0.31	-1.4
2,316,290	+		GFF2290	0.31	-0.4
2,316,290	-		GFF2290	0.31	+1.5
2,316,291	-		GFF2290	0.31	+0.3
2,316,291	-		GFF2290	0.31	-0.4
2,316,339	+		GFF2290	0.35	+0.4
2,316,398	-		GFF2290	0.40	+0.6
2,316,402	-		GFF2290	0.40	-2.8
2,316,402	-		GFF2290	0.40	-1.1
2,316,423	-		GFF2290	0.42	-0.7
2,316,431	-		GFF2290	0.42	-1.0
2,316,445	+		GFF2290	0.44	-0.7
2,316,445	+		GFF2290	0.44	+0.9
2,316,445	+		GFF2290	0.44	+0.9
2,316,453	-		GFF2290	0.44	-0.3
2,316,453	-		GFF2290	0.44	+1.3
2,316,453	-		GFF2290	0.44	-1.3
2,316,473	+		GFF2290	0.46	-0.9
2,316,509	-		GFF2290	0.49	-0.1
2,316,546	-		GFF2290	0.52	-0.5
2,316,555	+		GFF2290	0.52	-1.8
2,316,623	+		GFF2290	0.58	-1.1
2,316,646	+		GFF2290	0.60	-0.1
2,316,658	+		GFF2290	0.61	+0.2
2,316,668	+		GFF2290	0.62	+1.4
2,316,676	-		GFF2290	0.62	-0.7
2,316,676	-		GFF2290	0.62	-1.2
2,316,683	+		GFF2290	0.63	-0.3
2,316,703	+		GFF2290	0.64	-0.3
2,316,746	+		GFF2290	0.68	-1.4
2,316,746	+		GFF2290	0.68	-0.5
2,316,754	-		GFF2290	0.68	-0.5
2,316,754	-		GFF2290	0.68	-0.2
2,316,764	-		GFF2290	0.69	-0.1
2,316,771	-		GFF2290	0.70	-1.1
2,316,803	+		GFF2290	0.72	+1.3
2,316,807	+		GFF2290	0.73	-1.6
2,316,812	+		GFF2290	0.73	+0.1
2,316,820	+		GFF2290	0.74	-1.0
2,316,820	-		GFF2290	0.74	+0.8
2,316,822	+		GFF2290	0.74	-0.8
2,316,822	+		GFF2290	0.74	-0.5
2,316,828	-		GFF2290	0.74	-1.0
2,316,828	-		GFF2290	0.74	+0.2
2,316,830	-		GFF2290	0.75	+0.2
2,316,834	+		GFF2290	0.75	+0.4
2,316,843	-		GFF2290	0.76	-1.5
2,316,876	+		GFF2290	0.78	-0.1
2,316,886	+		GFF2290	0.79	-1.1
2,316,886	-		GFF2290	0.79	+0.7
2,316,894	-		GFF2290	0.80	+0.8
2,316,979	+		GFF2290	0.87	+0.1
2,316,987	-		GFF2290	0.87	-0.6
2,316,987	-		GFF2290	0.87	+0.4
2,316,987	-		GFF2290	0.87	-1.3
2,316,987	-		GFF2290	0.87	-0.4
2,316,998	-		GFF2290	0.88	-0.6
2,317,028	+				-1.3
2,317,033	+				+0.3
2,317,035	+				-1.1
2,317,037	+				+0.6
2,317,041	-				+0.2
2,317,047	+				+0.9
2,317,050	-				-0.8
2,317,057	-				+0.7
2,317,101	+				-0.7
2,317,112	+				-0.8
2,317,120	-				+0.0
2,317,148	-				-0.4
2,317,158	+				+0.0
2,317,161	+				+1.2
2,317,163	+				+0.4
2,317,171	-				+0.8
2,317,196	-				+0.5
2,317,222	+				+1.3
2,317,222	+				+0.1
2,317,230	-				-0.5
2,317,259	+				-0.3
2,317,265	+				-0.5
2,317,283	+				+0.4
2,317,283	+				-0.4
2,317,283	+				-1.1
2,317,286	-				-0.3
2,317,288	+				-1.4
2,317,296	-				+0.5
2,317,300	+				-1.5
2,317,301	-				-0.1
2,317,302	-				+1.6
2,317,303	-				-1.3
2,317,305	-				-0.2
2,317,308	-				-0.3
2,317,308	-				+0.5
2,317,354	+				-2.0
2,317,354	+				+0.5
2,317,354	+				-0.6
2,317,354	+				-1.3
2,317,362	-				-1.6
2,317,362	-				+0.5
2,317,372	+				-1.0
2,317,385	+				-1.0
2,317,390	+				+1.0
2,317,398	+				+1.3
2,317,403	+				+0.5
2,317,403	+				-0.3
2,317,403	+				-0.6
2,317,411	-				+0.8
2,317,453	-				-0.4
2,317,469	-		GFF2291	0.10	+0.2
2,317,473	+		GFF2291	0.11	-1.5
2,317,491	-		GFF2291	0.11	-0.6
2,317,554	-		GFF2291	0.14	-1.0
2,317,571	+		GFF2291	0.15	-0.5
2,317,587	-		GFF2291	0.16	+0.9
2,317,604	-		GFF2291	0.17	-0.4
2,317,615	+		GFF2291	0.17	-0.9
2,317,623	-		GFF2291	0.18	-0.3
2,317,632	+		GFF2291	0.18	-2.4
2,317,642	+		GFF2291	0.19	-0.5
2,317,642	+		GFF2291	0.19	+0.1
2,317,642	+		GFF2291	0.19	-0.2
2,317,642	+		GFF2291	0.19	-0.7
2,317,642	+		GFF2291	0.19	+1.2
2,317,642	+		GFF2291	0.19	+0.4
2,317,648	-		GFF2291	0.19	-1.0
2,317,650	-		GFF2291	0.19	-1.0
2,317,650	-		GFF2291	0.19	-1.0
2,317,650	-		GFF2291	0.19	-0.4
2,317,650	-		GFF2291	0.19	-0.8
2,317,742	-		GFF2291	0.23	-0.5
2,317,756	+		GFF2291	0.24	+1.3
2,317,757	+		GFF2291	0.24	-1.8
2,317,757	+		GFF2291	0.24	-0.7
2,317,757	+		GFF2291	0.24	+0.7
2,317,764	-		GFF2291	0.25	-0.6
2,317,765	-		GFF2291	0.25	+0.3
2,317,828	+		GFF2291	0.28	-0.1
2,317,828	+		GFF2291	0.28	-2.8
2,317,833	+		GFF2291	0.28	-1.0
2,317,842	+		GFF2291	0.28	+0.7
2,317,843	+		GFF2291	0.28	-0.2
2,317,843	+		GFF2291	0.28	-0.2
2,317,890	+		GFF2291	0.31	+0.2
2,317,923	+		GFF2291	0.32	+0.6
2,317,923	+		GFF2291	0.32	+0.2
2,317,936	-		GFF2291	0.33	-0.4
2,317,938	+		GFF2291	0.33	+0.4
2,317,938	+		GFF2291	0.33	-1.1
2,317,938	+		GFF2291	0.33	+0.6
2,317,938	+		GFF2291	0.33	-0.1
2,317,938	+		GFF2291	0.33	+0.6
2,317,944	+		GFF2291	0.33	-1.0
2,317,946	-		GFF2291	0.33	+0.8
2,317,946	-		GFF2291	0.33	+0.4
2,317,946	-		GFF2291	0.33	-1.1
2,317,946	-		GFF2291	0.33	+0.5
2,317,946	-		GFF2291	0.33	-1.1
2,317,953	+		GFF2291	0.34	-0.3
2,317,953	+		GFF2291	0.34	-0.8
2,317,958	+		GFF2291	0.34	-0.4
2,317,961	-		GFF2291	0.34	-1.0
2,317,961	-		GFF2291	0.34	-0.5
2,317,970	+		GFF2291	0.34	+0.7
2,317,970	+		GFF2291	0.34	-1.8
2,317,970	+		GFF2291	0.34	-0.6
2,317,978	-		GFF2291	0.35	-1.1
2,317,978	-		GFF2291	0.35	-0.1
2,317,988	+		GFF2291	0.35	-0.3
2,318,042	-		GFF2291	0.38	-0.5
2,318,054	-		GFF2291	0.38	-0.1
2,318,059	-		GFF2291	0.39	-0.3
2,318,064	+		GFF2291	0.39	-0.4
2,318,072	-		GFF2291	0.39	-0.1
2,318,072	-		GFF2291	0.39	-0.9
2,318,072	-		GFF2291	0.39	-1.5
2,318,073	-		GFF2291	0.39	+0.9
2,318,141	-		GFF2291	0.43	-0.8