Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF200 and GFF201 are separated by 335 nucleotides GFF201 and GFF202 overlap by 4 nucleotides
GFF200 - hypothetical protein, at 201,753 to 202,361
GFF200
GFF201 - 'DNA polymerase III epsilon subunit and related 3'-5' exonuclease' transl_table=11, at 202,697 to 202,987
GFF201
GFF202 - hypothetical protein, at 202,984 to 204,294
GFF202
Position (kb) 202
203 Strain fitness (log2 ratio) -2
-1
0
1
2 at 201.697 kb on - strand at 201.702 kb on - strand at 201.731 kb on - strand at 201.741 kb on - strand at 201.745 kb on - strand at 201.745 kb on - strand at 201.745 kb on - strand at 201.745 kb on - strand at 201.769 kb on + strand at 201.769 kb on + strand at 201.783 kb on + strand at 201.783 kb on + strand at 201.796 kb on - strand at 201.801 kb on - strand at 201.821 kb on + strand, within GFF200 at 201.887 kb on + strand, within GFF200 at 201.895 kb on - strand, within GFF200 at 201.895 kb on - strand, within GFF200 at 201.895 kb on - strand, within GFF200 at 201.895 kb on - strand, within GFF200 at 201.895 kb on - strand, within GFF200 at 201.895 kb on - strand, within GFF200 at 201.915 kb on - strand, within GFF200 at 201.930 kb on - strand, within GFF200 at 201.957 kb on - strand, within GFF200 at 202.001 kb on - strand, within GFF200 at 202.001 kb on - strand, within GFF200 at 202.017 kb on - strand, within GFF200 at 202.037 kb on + strand, within GFF200 at 202.045 kb on - strand, within GFF200 at 202.137 kb on + strand, within GFF200 at 202.152 kb on - strand, within GFF200 at 202.200 kb on - strand, within GFF200 at 202.208 kb on + strand, within GFF200 at 202.216 kb on - strand, within GFF200 at 202.229 kb on - strand, within GFF200 at 202.229 kb on - strand, within GFF200 at 202.232 kb on + strand, within GFF200 at 202.240 kb on - strand, within GFF200 at 202.245 kb on - strand, within GFF200 at 202.250 kb on - strand, within GFF200 at 202.250 kb on - strand, within GFF200 at 202.250 kb on - strand, within GFF200 at 202.254 kb on + strand, within GFF200 at 202.377 kb on - strand at 202.380 kb on - strand at 202.385 kb on - strand at 202.405 kb on + strand at 202.424 kb on + strand at 202.432 kb on - strand at 202.440 kb on + strand at 202.440 kb on + strand at 202.448 kb on - strand at 202.448 kb on - strand at 202.448 kb on - strand at 202.500 kb on - strand at 202.505 kb on + strand at 202.505 kb on + strand at 202.505 kb on + strand at 202.508 kb on + strand at 202.513 kb on - strand at 202.513 kb on - strand at 202.513 kb on - strand at 202.527 kb on + strand at 202.527 kb on + strand at 202.527 kb on + strand at 202.527 kb on + strand at 202.527 kb on + strand at 202.527 kb on + strand at 202.535 kb on - strand at 202.535 kb on - strand at 202.535 kb on - strand at 202.535 kb on - strand at 202.535 kb on - strand at 202.535 kb on - strand at 202.535 kb on - strand at 202.535 kb on - strand at 202.544 kb on - strand at 202.555 kb on - strand at 202.555 kb on - strand at 202.563 kb on - strand at 202.563 kb on - strand at 202.563 kb on - strand at 202.567 kb on + strand at 202.575 kb on - strand at 202.581 kb on + strand at 202.581 kb on - strand at 202.588 kb on + strand at 202.613 kb on + strand at 202.613 kb on + strand at 202.618 kb on + strand at 202.621 kb on - strand at 202.621 kb on - strand at 202.621 kb on - strand at 202.621 kb on - strand at 202.695 kb on + strand at 202.696 kb on - strand at 202.703 kb on - strand at 202.706 kb on + strand at 202.711 kb on + strand at 202.711 kb on + strand at 202.719 kb on - strand at 202.719 kb on - strand at 202.719 kb on - strand at 202.721 kb on + strand at 202.729 kb on - strand, within GFF201 at 202.734 kb on - strand, within GFF201 at 202.775 kb on + strand, within GFF201 at 202.778 kb on - strand, within GFF201 at 202.780 kb on + strand, within GFF201 at 202.788 kb on - strand, within GFF201 at 202.855 kb on + strand, within GFF201 at 202.856 kb on - strand, within GFF201 at 202.893 kb on + strand, within GFF201 at 202.900 kb on - strand, within GFF201 at 202.901 kb on - strand, within GFF201 at 202.918 kb on + strand, within GFF201 at 202.923 kb on - strand, within GFF201 at 202.926 kb on + strand, within GFF201 at 202.926 kb on - strand, within GFF201 at 202.930 kb on + strand, within GFF201 at 202.931 kb on - strand, within GFF201 at 202.940 kb on - strand, within GFF201 at 202.971 kb on - strand at 202.985 kb on - strand at 203.019 kb on + strand at 203.019 kb on + strand at 203.046 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.076 kb on + strand at 203.084 kb on - strand at 203.084 kb on - strand at 203.084 kb on - strand at 203.084 kb on - strand at 203.084 kb on - strand at 203.084 kb on - strand at 203.086 kb on + strand at 203.086 kb on + strand at 203.086 kb on + strand at 203.089 kb on - strand at 203.094 kb on - strand at 203.094 kb on - strand at 203.097 kb on + strand at 203.107 kb on + strand at 203.108 kb on + strand at 203.108 kb on + strand at 203.108 kb on + strand at 203.113 kb on + strand at 203.113 kb on + strand at 203.116 kb on - strand, within GFF202 at 203.116 kb on - strand, within GFF202 at 203.116 kb on - strand, within GFF202 at 203.121 kb on - strand, within GFF202 at 203.121 kb on - strand, within GFF202 at 203.147 kb on + strand, within GFF202 at 203.150 kb on - strand, within GFF202 at 203.160 kb on - strand, within GFF202 at 203.166 kb on - strand, within GFF202 at 203.171 kb on - strand, within GFF202 at 203.171 kb on - strand, within GFF202 at 203.185 kb on + strand, within GFF202 at 203.185 kb on + strand, within GFF202 at 203.195 kb on - strand, within GFF202 at 203.230 kb on + strand, within GFF202 at 203.231 kb on - strand, within GFF202 at 203.238 kb on - strand, within GFF202 at 203.238 kb on - strand, within GFF202 at 203.261 kb on + strand, within GFF202 at 203.276 kb on - strand, within GFF202 at 203.278 kb on + strand, within GFF202 at 203.286 kb on - strand, within GFF202 at 203.286 kb on - strand, within GFF202 at 203.286 kb on - strand, within GFF202 at 203.309 kb on + strand, within GFF202 at 203.331 kb on + strand, within GFF202 at 203.331 kb on + strand, within GFF202 at 203.342 kb on - strand, within GFF202 at 203.365 kb on + strand, within GFF202 at 203.365 kb on + strand, within GFF202 at 203.365 kb on + strand, within GFF202 at 203.365 kb on - strand, within GFF202 at 203.373 kb on - strand, within GFF202 at 203.373 kb on - strand, within GFF202 at 203.373 kb on - strand, within GFF202 at 203.373 kb on - strand, within GFF202 at 203.379 kb on + strand, within GFF202 at 203.397 kb on - strand, within GFF202 at 203.399 kb on - strand, within GFF202 at 203.404 kb on + strand, within GFF202 at 203.404 kb on + strand, within GFF202 at 203.412 kb on - strand, within GFF202 at 203.412 kb on - strand, within GFF202 at 203.412 kb on - strand, within GFF202 at 203.462 kb on - strand, within GFF202 at 203.467 kb on - strand, within GFF202 at 203.476 kb on + strand, within GFF202 at 203.477 kb on - strand, within GFF202 at 203.502 kb on + strand, within GFF202 at 203.504 kb on + strand, within GFF202 at 203.504 kb on + strand, within GFF202 at 203.504 kb on + strand, within GFF202 at 203.512 kb on - strand, within GFF202 at 203.512 kb on - strand, within GFF202 at 203.512 kb on - strand, within GFF202 at 203.547 kb on - strand, within GFF202 at 203.572 kb on - strand, within GFF202 at 203.582 kb on + strand, within GFF202 at 203.590 kb on - strand, within GFF202 at 203.590 kb on - strand, within GFF202 at 203.590 kb on - strand, within GFF202 at 203.590 kb on - strand, within GFF202 at 203.607 kb on + strand, within GFF202 at 203.615 kb on - strand, within GFF202 at 203.616 kb on + strand, within GFF202 at 203.624 kb on - strand, within GFF202 at 203.644 kb on + strand, within GFF202 at 203.661 kb on + strand, within GFF202 at 203.661 kb on + strand, within GFF202 at 203.669 kb on - strand, within GFF202 at 203.669 kb on - strand, within GFF202 at 203.684 kb on + strand, within GFF202 at 203.686 kb on + strand, within GFF202 at 203.694 kb on - strand, within GFF202 at 203.694 kb on - strand, within GFF202 at 203.700 kb on - strand, within GFF202 at 203.714 kb on + strand, within GFF202 at 203.714 kb on + strand, within GFF202 at 203.714 kb on + strand, within GFF202 at 203.719 kb on + strand, within GFF202 at 203.719 kb on + strand, within GFF202 at 203.719 kb on + strand, within GFF202 at 203.719 kb on + strand, within GFF202 at 203.722 kb on - strand, within GFF202 at 203.722 kb on - strand, within GFF202 at 203.722 kb on - strand, within GFF202 at 203.722 kb on - strand, within GFF202 at 203.722 kb on - strand, within GFF202 at 203.722 kb on - strand, within GFF202 at 203.722 kb on - strand, within GFF202 at 203.727 kb on - strand, within GFF202 at 203.727 kb on - strand, within GFF202 at 203.739 kb on - strand, within GFF202 at 203.754 kb on - strand, within GFF202 at 203.758 kb on + strand, within GFF202 at 203.762 kb on - strand, within GFF202 at 203.766 kb on - strand, within GFF202 at 203.794 kb on - strand, within GFF202 at 203.794 kb on - strand, within GFF202 at 203.797 kb on + strand, within GFF202 at 203.814 kb on - strand, within GFF202 at 203.819 kb on + strand, within GFF202 at 203.841 kb on - strand, within GFF202 at 203.858 kb on - strand, within GFF202 at 203.866 kb on - strand, within GFF202 at 203.866 kb on - strand, within GFF202 at 203.931 kb on + strand, within GFF202 at 203.944 kb on - strand, within GFF202 at 203.950 kb on - strand, within GFF202 at 203.959 kb on + strand, within GFF202 at 203.969 kb on + strand, within GFF202 at 203.969 kb on + strand, within GFF202 at 203.977 kb on - strand, within GFF202 at 203.977 kb on - strand, within GFF202 at 203.977 kb on - strand, within GFF202 at 203.977 kb on - strand, within GFF202 at 203.977 kb on - strand, within GFF202 at 203.979 kb on + strand, within GFF202 at 203.985 kb on + strand, within GFF202 at 203.985 kb on + strand, within GFF202
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Ammonium Sulfate remove 201,697 - -0.4 201,702 - +1.5 201,731 - -1.6 201,741 - +1.0 201,745 - -1.7 201,745 - +0.8 201,745 - -1.2 201,745 - -0.1 201,769 + -0.4 201,769 + -1.4 201,783 + +0.6 201,783 + +0.8 201,796 - -0.7 201,801 - -0.1 201,821 + GFF200 0.11 -1.0 201,887 + GFF200 0.22 -0.7 201,895 - GFF200 0.23 -0.5 201,895 - GFF200 0.23 -0.7 201,895 - GFF200 0.23 -0.8 201,895 - GFF200 0.23 -0.4 201,895 - GFF200 0.23 -0.1 201,895 - GFF200 0.23 -0.2 201,915 - GFF200 0.27 -0.7 201,930 - GFF200 0.29 -1.2 201,957 - GFF200 0.33 +0.0 202,001 - GFF200 0.41 +0.2 202,001 - GFF200 0.41 -1.1 202,017 - GFF200 0.43 +0.6 202,037 + GFF200 0.47 -0.6 202,045 - GFF200 0.48 -0.8 202,137 + GFF200 0.63 +1.6 202,152 - GFF200 0.66 -0.4 202,200 - GFF200 0.73 +0.6 202,208 + GFF200 0.75 -1.8 202,216 - GFF200 0.76 -1.2 202,229 - GFF200 0.78 -0.0 202,229 - GFF200 0.78 +0.4 202,232 + GFF200 0.79 -0.4 202,240 - GFF200 0.80 +0.8 202,245 - GFF200 0.81 +0.3 202,250 - GFF200 0.82 -0.2 202,250 - GFF200 0.82 -1.3 202,250 - GFF200 0.82 +0.1 202,254 + GFF200 0.82 -0.3 202,377 - -1.4 202,380 - -0.7 202,385 - -0.3 202,405 + +0.1 202,424 + -0.3 202,432 - -0.7 202,440 + -1.1 202,440 + -0.9 202,448 - -2.1 202,448 - -0.4 202,448 - -2.0 202,500 - +1.0 202,505 + -1.4 202,505 + -0.9 202,505 + +2.2 202,508 + -1.5 202,513 - -1.3 202,513 - -0.8 202,513 - -1.2 202,527 + -0.2 202,527 + -0.3 202,527 + -0.2 202,527 + -0.4 202,527 + -0.9 202,527 + +0.2 202,535 - -1.1 202,535 - -0.2 202,535 - -0.6 202,535 - +0.3 202,535 - -0.2 202,535 - -0.7 202,535 - -1.0 202,535 - +2.5 202,544 - -0.5 202,555 - +0.2 202,555 - +0.1 202,563 - -0.1 202,563 - +1.6 202,563 - +0.9 202,567 + +0.5 202,575 - -0.8 202,581 + -0.4 202,581 - -1.4 202,588 + -0.8 202,613 + +2.0 202,613 + -0.9 202,618 + +0.8 202,621 - -0.0 202,621 - -0.4 202,621 - +0.8 202,621 - -0.2 202,695 + +0.7 202,696 - +1.2 202,703 - -2.6 202,706 + -2.1 202,711 + -1.9 202,711 + +0.2 202,719 - -0.4 202,719 - -1.7 202,719 - -0.0 202,721 + -0.7 202,729 - GFF201 0.11 +0.0 202,734 - GFF201 0.13 -0.0 202,775 + GFF201 0.27 +0.8 202,778 - GFF201 0.28 +0.9 202,780 + GFF201 0.29 +1.7 202,788 - GFF201 0.31 -0.0 202,855 + GFF201 0.54 -0.6 202,856 - GFF201 0.55 +1.4 202,893 + GFF201 0.67 +0.4 202,900 - GFF201 0.70 -2.0 202,901 - GFF201 0.70 -0.4 202,918 + GFF201 0.76 -0.6 202,923 - GFF201 0.78 -1.1 202,926 + GFF201 0.79 -0.4 202,926 - GFF201 0.79 -0.0 202,930 + GFF201 0.80 -0.1 202,931 - GFF201 0.80 +1.2 202,940 - GFF201 0.84 -0.9 202,971 - -0.8 202,985 - -1.0 203,019 + -1.0 203,019 + +1.0 203,046 + -0.1 203,076 + +0.4 203,076 + +0.8 203,076 + -0.1 203,076 + -0.1 203,076 + -0.2 203,076 + +1.0 203,076 + -1.5 203,076 + -0.7 203,076 + -0.3 203,076 + -0.5 203,076 + +1.2 203,084 - -0.3 203,084 - -1.2 203,084 - +0.2 203,084 - +0.6 203,084 - +0.8 203,084 - +0.5 203,086 + -1.0 203,086 + +0.5 203,086 + -1.0 203,089 - +0.8 203,094 - -0.4 203,094 - +1.0 203,097 + +0.0 203,107 + +0.6 203,108 + -1.6 203,108 + +0.0 203,108 + -0.7 203,113 + -1.9 203,113 + +1.4 203,116 - GFF202 0.10 +0.9 203,116 - GFF202 0.10 -0.1 203,116 - GFF202 0.10 +0.2 203,121 - GFF202 0.10 +0.9 203,121 - GFF202 0.10 -0.3 203,147 + GFF202 0.12 -0.0 203,150 - GFF202 0.13 +0.4 203,160 - GFF202 0.13 -0.2 203,166 - GFF202 0.14 -1.0 203,171 - GFF202 0.14 -0.5 203,171 - GFF202 0.14 +0.8 203,185 + GFF202 0.15 -0.4 203,185 + GFF202 0.15 +0.6 203,195 - GFF202 0.16 -0.5 203,230 + GFF202 0.19 +1.1 203,231 - GFF202 0.19 -1.2 203,238 - GFF202 0.19 +0.8 203,238 - GFF202 0.19 -1.1 203,261 + GFF202 0.21 +1.2 203,276 - GFF202 0.22 +0.9 203,278 + GFF202 0.22 -0.4 203,286 - GFF202 0.23 +0.9 203,286 - GFF202 0.23 -1.8 203,286 - GFF202 0.23 +0.3 203,309 + GFF202 0.25 +0.2 203,331 + GFF202 0.26 +0.9 203,331 + GFF202 0.26 -0.7 203,342 - GFF202 0.27 +0.9 203,365 + GFF202 0.29 -0.1 203,365 + GFF202 0.29 -0.9 203,365 + GFF202 0.29 +0.5 203,365 - GFF202 0.29 +1.0 203,373 - GFF202 0.30 -0.3 203,373 - GFF202 0.30 -1.2 203,373 - GFF202 0.30 -0.2 203,373 - GFF202 0.30 -1.4 203,379 + GFF202 0.30 -0.4 203,397 - GFF202 0.32 -0.3 203,399 - GFF202 0.32 -0.1 203,404 + GFF202 0.32 -0.2 203,404 + GFF202 0.32 -0.3 203,412 - GFF202 0.33 -0.2 203,412 - GFF202 0.33 -1.0 203,412 - GFF202 0.33 -0.6 203,462 - GFF202 0.36 -0.6 203,467 - GFF202 0.37 +0.2 203,476 + GFF202 0.38 -1.5 203,477 - GFF202 0.38 -0.9 203,502 + GFF202 0.40 -1.0 203,504 + GFF202 0.40 -1.3 203,504 + GFF202 0.40 +0.3 203,504 + GFF202 0.40 +1.1 203,512 - GFF202 0.40 -0.3 203,512 - GFF202 0.40 -0.2 203,512 - GFF202 0.40 -1.2 203,547 - GFF202 0.43 -0.0 203,572 - GFF202 0.45 -0.5 203,582 + GFF202 0.46 -1.5 203,590 - GFF202 0.46 +0.7 203,590 - GFF202 0.46 -0.5 203,590 - GFF202 0.46 -0.2 203,590 - GFF202 0.46 +1.2 203,607 + GFF202 0.48 -0.8 203,615 - GFF202 0.48 +0.2 203,616 + GFF202 0.48 -1.0 203,624 - GFF202 0.49 -0.3 203,644 + GFF202 0.50 +0.0 203,661 + GFF202 0.52 +0.4 203,661 + GFF202 0.52 -1.6 203,669 - GFF202 0.52 -0.1 203,669 - GFF202 0.52 +1.1 203,684 + GFF202 0.53 -0.8 203,686 + GFF202 0.54 +0.4 203,694 - GFF202 0.54 -1.2 203,694 - GFF202 0.54 -1.0 203,700 - GFF202 0.55 -0.0 203,714 + GFF202 0.56 +0.6 203,714 + GFF202 0.56 -0.4 203,714 + GFF202 0.56 +0.1 203,719 + GFF202 0.56 -1.0 203,719 + GFF202 0.56 +0.6 203,719 + GFF202 0.56 -1.0 203,719 + GFF202 0.56 +0.9 203,722 - GFF202 0.56 -0.7 203,722 - GFF202 0.56 -1.3 203,722 - GFF202 0.56 +0.8 203,722 - GFF202 0.56 +0.5 203,722 - GFF202 0.56 -0.5 203,722 - GFF202 0.56 -0.2 203,722 - GFF202 0.56 +0.8 203,727 - GFF202 0.57 -0.1 203,727 - GFF202 0.57 -0.2 203,739 - GFF202 0.58 +0.2 203,754 - GFF202 0.59 -0.3 203,758 + GFF202 0.59 -1.7 203,762 - GFF202 0.59 +0.2 203,766 - GFF202 0.60 -1.6 203,794 - GFF202 0.62 -1.4 203,794 - GFF202 0.62 +0.3 203,797 + GFF202 0.62 -0.7 203,814 - GFF202 0.63 +0.2 203,819 + GFF202 0.64 -1.0 203,841 - GFF202 0.65 +0.5 203,858 - GFF202 0.67 -1.0 203,866 - GFF202 0.67 -0.9 203,866 - GFF202 0.67 -0.8 203,931 + GFF202 0.72 +0.8 203,944 - GFF202 0.73 -0.7 203,950 - GFF202 0.74 -1.2 203,959 + GFF202 0.74 -0.2 203,969 + GFF202 0.75 +0.5 203,969 + GFF202 0.75 +0.2 203,977 - GFF202 0.76 +1.5 203,977 - GFF202 0.76 +0.2 203,977 - GFF202 0.76 +0.4 203,977 - GFF202 0.76 +0.6 203,977 - GFF202 0.76 +1.0 203,979 + GFF202 0.76 -0.9 203,985 + GFF202 0.76 +0.0 203,985 + GFF202 0.76 +1.6
Or see this region's nucleotide sequence