Strain Fitness in Sphingobium sp. HT1-2 around GFF1887

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,911,674	+				-0.1
1,911,961	+				+1.2
1,911,970	+				-1.0
1,911,970	+				+2.3
1,911,992	+				-0.9
1,912,000	-				-0.2
1,912,061	-				-0.2
1,912,093	+				-0.6
1,912,095	+				-0.1
1,912,125	-				-0.2
1,912,133	+				-1.2
1,912,164	+				-0.9
1,912,164	+				+0.8
1,912,164	+				-0.1
1,912,167	-				-1.1
1,912,181	-				-0.1
1,912,184	+				+1.3
1,912,208	+				-0.6
1,912,235	-				-1.0
1,912,252	+				-0.9
1,912,260	-				+0.2
1,912,279	+				-0.8
1,912,279	+				-0.6
1,912,284	+				-1.5
1,912,287	-				+0.3
1,912,290	+				-0.3
1,912,291	+				-0.1
1,912,291	+				-0.5
1,912,296	+				-1.6
1,912,297	+		GFF1887	0.10	-1.1
1,912,301	+		GFF1887	0.11	-1.9
1,912,301	+		GFF1887	0.11	-1.8
1,912,301	+		GFF1887	0.11	+0.4
1,912,301	+		GFF1887	0.11	-0.6
1,912,302	+		GFF1887	0.11	-0.9
1,912,304	-		GFF1887	0.11	-0.1
1,912,309	-		GFF1887	0.12	-1.4
1,912,309	-		GFF1887	0.12	-0.1
1,912,309	-		GFF1887	0.12	-2.4
1,912,315	-		GFF1887	0.13	-1.0
1,912,326	+		GFF1887	0.15	-0.1
1,912,326	+		GFF1887	0.15	-1.2
1,912,326	+		GFF1887	0.15	-0.2
1,912,326	+		GFF1887	0.15	-1.7
1,912,334	-		GFF1887	0.16	+0.0
1,912,334	-		GFF1887	0.16	-0.1
1,912,340	+		GFF1887	0.18	+1.1
1,912,344	-		GFF1887	0.18	+1.5
1,912,357	+		GFF1887	0.20	+0.1
1,912,357	+		GFF1887	0.20	+0.1
1,912,357	+		GFF1887	0.20	-2.3
1,912,362	+		GFF1887	0.21	-2.2
1,912,365	-		GFF1887	0.22	-0.2
1,912,365	-		GFF1887	0.22	-0.0
1,912,365	-		GFF1887	0.22	+0.8
1,912,367	+		GFF1887	0.22	-1.2
1,912,370	-		GFF1887	0.23	-1.0
1,912,371	-		GFF1887	0.23	-0.9
1,912,374	+		GFF1887	0.23	+2.1
1,912,382	-		GFF1887	0.25	+0.1
1,912,382	-		GFF1887	0.25	-2.1
1,912,382	-		GFF1887	0.25	-0.1
1,912,390	-		GFF1887	0.26	+0.3
1,912,392	-		GFF1887	0.27	+1.3
1,912,411	+		GFF1887	0.30	-0.5
1,912,413	-		GFF1887	0.30	+0.7
1,912,436	+		GFF1887	0.34	-0.6
1,912,436	+		GFF1887	0.34	-0.7
1,912,440	-		GFF1887	0.35	-0.2
1,912,473	-		GFF1887	0.41	+0.2
1,912,490	-		GFF1887	0.44	-0.6
1,912,505	+		GFF1887	0.46	-0.5
1,912,513	+		GFF1887	0.48	-0.7
1,912,526	+		GFF1887	0.50	-1.6
1,912,528	+		GFF1887	0.50	-0.7
1,912,528	+		GFF1887	0.50	-0.4
1,912,528	+		GFF1887	0.50	-1.3
1,912,528	+		GFF1887	0.50	-0.3
1,912,533	+		GFF1887	0.51	-1.5
1,912,533	+		GFF1887	0.51	-0.9
1,912,536	-		GFF1887	0.52	-0.1
1,912,536	-		GFF1887	0.52	+0.6
1,912,541	-		GFF1887	0.52	-1.3
1,912,541	-		GFF1887	0.52	+0.4
1,912,541	-		GFF1887	0.52	-1.2
1,912,564	+		GFF1887	0.56	+0.3
1,912,566	+		GFF1887	0.57	-0.3
1,912,566	+		GFF1887	0.57	+0.5
1,912,569	-		GFF1887	0.57	-1.1
1,912,574	-		GFF1887	0.58	-0.3
1,912,611	+		GFF1887	0.65	-1.3
1,912,639	+		GFF1887	0.69	+0.1
1,912,639	+		GFF1887	0.69	-1.2
1,912,639	+		GFF1887	0.69	+0.0
1,912,639	+		GFF1887	0.69	+0.3
1,912,639	+		GFF1887	0.69	-0.0
1,912,641	-		GFF1887	0.70	-0.2
1,912,647	-		GFF1887	0.71	-1.0
1,912,647	-		GFF1887	0.71	+0.7
1,912,686	-		GFF1887	0.78	-1.1
1,912,688	-		GFF1887	0.78	-0.7
1,912,691	+		GFF1887	0.78	-1.6
1,912,699	-		GFF1887	0.80	-1.7
1,912,699	-		GFF1887	0.80	-1.2
1,912,704	+		GFF1887	0.81	-0.9
1,912,704	-		GFF1887	0.81	-0.2
1,912,704	-		GFF1887	0.81	-1.9
1,912,728	+		GFF1887	0.85	-0.3
1,912,747	-		GFF1887	0.88	-1.3
1,912,747	-		GFF1887	0.88	-1.3
1,912,757	-				-0.9
1,912,767	-				+1.0
1,912,812	+				-0.0
1,912,820	-				+0.0
1,912,857	-				-0.9
1,912,871	-				-0.1
1,912,889	-				-2.1
1,912,921	-		GFF1888	0.13	-0.7
1,912,939	+		GFF1888	0.17	-0.4
1,912,944	+		GFF1888	0.18	-0.6
1,912,947	-		GFF1888	0.18	-1.0
1,912,947	-		GFF1888	0.18	-1.2
1,913,015	-		GFF1888	0.31	-1.2
1,913,073	+		GFF1888	0.42	-1.3
1,913,082	-		GFF1888	0.44	+0.9
1,913,105	-		GFF1888	0.48	-0.3
1,913,127	+		GFF1888	0.52	-2.1
1,913,130	-		GFF1888	0.53	-1.6
1,913,135	-		GFF1888	0.54	-1.3
1,913,135	-		GFF1888	0.54	+0.7
1,913,183	+		GFF1888	0.63	+0.1
1,913,191	-		GFF1888	0.64	-0.2
1,913,205	+		GFF1888	0.67	-1.7
1,913,206	-		GFF1888	0.67	-0.9
1,913,207	+		GFF1888	0.67	+0.1
1,913,213	-		GFF1888	0.69	-0.6
1,913,215	-		GFF1888	0.69	-1.0
1,913,217	+		GFF1888	0.69	+1.0
1,913,229	+		GFF1888	0.72	-0.7
1,913,237	-		GFF1888	0.73	+2.1
1,913,279	+		GFF1888	0.81	-1.1
1,913,280	+		GFF1888	0.81	+0.6
1,913,289	+		GFF1888	0.83	-0.2
1,913,293	-		GFF1888	0.84	+1.5
1,913,311	+		GFF1888	0.87	-0.6
1,913,311	+		GFF1888	0.87	-2.2
1,913,319	-		GFF1888	0.89	+1.2
1,913,319	-		GFF1888	0.89	-1.0
1,913,339	+				-0.0
1,913,339	+				+0.3
1,913,339	+				-1.1
1,913,339	+				-2.6
1,913,339	+				-1.0
1,913,347	-				-0.9
1,913,361	+				-0.7
1,913,363	-				+0.3
1,913,366	+				+0.5
1,913,366	+				+1.0
1,913,366	+				+0.8
1,913,369	-				+0.3
1,913,374	-				-1.4
1,913,374	-				-0.9
1,913,374	-				-2.0
1,913,382	-				-1.0
1,913,392	-				-1.6
1,913,399	+				+0.7
1,913,409	+				-0.5
1,913,417	-				+0.3
1,913,426	-				-0.3
1,913,426	-				-0.2
1,913,426	-				+0.0
1,913,430	+				+1.2
1,913,430	+				-0.0
1,913,430	+				+1.0
1,913,430	+				-0.2
1,913,430	+				-0.2
1,913,430	+				+0.6
1,913,430	+				+0.0
1,913,430	+				-1.0
1,913,430	+				-1.0
1,913,438	-				-0.7
1,913,438	-				+1.3
1,913,438	-				-0.6
1,913,438	-				-0.2
1,913,438	-				-0.0
1,913,438	-				-1.2
1,913,438	-				-1.0
1,913,438	-				-0.1
1,913,444	-				+0.4
1,913,455	+				-1.0
1,913,455	+				+0.1
1,913,455	+				-0.2
1,913,455	+				-1.2
1,913,458	-				+0.4
1,913,487	+				-0.6
1,913,489	+				-0.7
1,913,504	+		GFF1889	0.10	-0.7
1,913,510	-		GFF1889	0.11	+0.2
1,913,514	+		GFF1889	0.12	+0.7
1,913,545	+		GFF1889	0.16	-1.0
1,913,566	-		GFF1889	0.20	+1.1
1,913,569	+		GFF1889	0.20	+0.7
1,913,570	+		GFF1889	0.20	-1.5
1,913,578	+		GFF1889	0.21	+0.2
1,913,611	+		GFF1889	0.26	+0.9
1,913,619	-		GFF1889	0.27	-1.2
1,913,620	+		GFF1889	0.27	-0.3
1,913,628	-		GFF1889	0.29	-0.0
1,913,723	-		GFF1889	0.43	+0.2
1,913,725	-		GFF1889	0.43	-1.0
1,913,730	-		GFF1889	0.44	+0.2
1,913,735	-		GFF1889	0.44	-1.7
1,913,756	-		GFF1889	0.47	-0.2
1,913,770	+		GFF1889	0.49	-0.5
1,913,802	+		GFF1889	0.54	-1.4
1,913,807	+		GFF1889	0.55	+1.5
1,913,807	+		GFF1889	0.55	-0.6
1,913,807	+		GFF1889	0.55	+1.1
1,913,807	+		GFF1889	0.55	-1.5
1,913,807	+		GFF1889	0.55	-1.7
1,913,812	+		GFF1889	0.56	+0.8