Strain Fitness in Sphingobium sp. HT1-2 around GFF1731

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,756,710	+		GFF1730	0.42	-0.7
1,756,723	-		GFF1730	0.43	-1.6
1,756,725	-		GFF1730	0.43	+0.7
1,756,725	-		GFF1730	0.43	-0.6
1,756,730	+		GFF1730	0.44	+0.1
1,756,730	-		GFF1730	0.44	-1.2
1,756,732	+		GFF1730	0.44	-1.4
1,756,732	+		GFF1730	0.44	+0.1
1,756,738	-		GFF1730	0.44	-0.3
1,756,740	-		GFF1730	0.44	-0.8
1,756,740	-		GFF1730	0.44	+0.7
1,756,741	-		GFF1730	0.44	-1.8
1,756,747	+		GFF1730	0.45	-0.6
1,756,752	+		GFF1730	0.45	-1.1
1,756,752	+		GFF1730	0.45	-0.1
1,756,753	+		GFF1730	0.45	-0.1
1,756,755	-		GFF1730	0.45	-0.1
1,756,759	+		GFF1730	0.46	-2.1
1,756,759	+		GFF1730	0.46	-1.2
1,756,761	-		GFF1730	0.46	+0.9
1,756,769	+		GFF1730	0.46	-0.4
1,756,777	-		GFF1730	0.47	-0.8
1,756,778	+		GFF1730	0.47	-0.4
1,756,783	-		GFF1730	0.47	-0.2
1,756,811	+		GFF1730	0.49	-0.7
1,756,814	-		GFF1730	0.49	-0.1
1,756,816	-		GFF1730	0.49	-0.5
1,756,819	+		GFF1730	0.49	+0.6
1,756,819	-		GFF1730	0.49	-1.1
1,756,819	-		GFF1730	0.49	+0.4
1,756,837	-		GFF1730	0.50	-1.1
1,756,840	-		GFF1730	0.51	+0.1
1,756,843	+		GFF1730	0.51	+0.5
1,756,847	+		GFF1730	0.51	-0.8
1,756,847	+		GFF1730	0.51	-1.1
1,756,847	+		GFF1730	0.51	-0.8
1,756,847	+		GFF1730	0.51	-0.2
1,756,850	-		GFF1730	0.51	-1.7
1,756,852	+		GFF1730	0.51	-0.1
1,756,852	+		GFF1730	0.51	-1.1
1,756,853	+		GFF1730	0.51	+0.4
1,756,855	-		GFF1730	0.52	-1.5
1,756,855	-		GFF1730	0.52	+0.8
1,756,855	-		GFF1730	0.52	-0.1
1,756,855	-		GFF1730	0.52	-0.9
1,756,855	-		GFF1730	0.52	-1.0
1,756,855	-		GFF1730	0.52	-1.3
1,756,889	+		GFF1730	0.54	+0.2
1,756,897	-		GFF1730	0.54	-0.2
1,756,915	-		GFF1730	0.55	-1.9
1,756,924	+		GFF1730	0.56	-0.4
1,756,930	-		GFF1730	0.56	-1.6
1,756,932	-		GFF1730	0.57	-2.1
1,756,979	+		GFF1730	0.60	+0.4
1,756,996	+		GFF1730	0.61	-1.4
1,756,996	+		GFF1730	0.61	-1.1
1,757,004	-		GFF1730	0.61	+0.7
1,757,004	-		GFF1730	0.61	+0.3
1,757,055	-		GFF1730	0.64	-0.7
1,757,057	+		GFF1730	0.64	+0.5
1,757,065	-		GFF1730	0.65	+0.2
1,757,065	-		GFF1730	0.65	+0.8
1,757,074	-		GFF1730	0.66	-1.5
1,757,076	+		GFF1730	0.66	-0.9
1,757,081	+		GFF1730	0.66	+0.5
1,757,084	-		GFF1730	0.66	+1.4
1,757,084	-		GFF1730	0.66	-0.8
1,757,109	-		GFF1730	0.68	-1.3
1,757,128	-		GFF1730	0.69	-1.2
1,757,151	+		GFF1730	0.70	-1.0
1,757,159	-		GFF1730	0.71	-0.9
1,757,163	+		GFF1730	0.71	-0.5
1,757,169	+		GFF1730	0.72	+0.4
1,757,171	+		GFF1730	0.72	-1.3
1,757,171	+		GFF1730	0.72	+1.9
1,757,171	+		GFF1730	0.72	-0.4
1,757,171	+		GFF1730	0.72	-0.5
1,757,176	+		GFF1730	0.72	+0.5
1,757,179	-		GFF1730	0.72	-0.4
1,757,179	-		GFF1730	0.72	-1.3
1,757,179	-		GFF1730	0.72	-1.3
1,757,179	-		GFF1730	0.72	-0.7
1,757,179	-		GFF1730	0.72	+0.1
1,757,181	+		GFF1730	0.72	-0.4
1,757,184	-		GFF1730	0.73	-1.1
1,757,184	-		GFF1730	0.73	+0.8
1,757,198	+		GFF1730	0.73	-0.5
1,757,206	-		GFF1730	0.74	-0.9
1,757,226	+		GFF1730	0.75	+0.1
1,757,250	-		GFF1730	0.77	-0.4
1,757,280	+		GFF1730	0.79	+1.5
1,757,280	+		GFF1730	0.79	+0.3
1,757,280	+		GFF1730	0.79	-0.5
1,757,280	+		GFF1730	0.79	-0.2
1,757,288	-		GFF1730	0.79	-1.4
1,757,288	-		GFF1730	0.79	-0.4
1,757,288	-		GFF1730	0.79	-0.8
1,757,288	-		GFF1730	0.79	-1.8
1,757,288	-		GFF1730	0.79	-1.6
1,757,288	-		GFF1730	0.79	-0.2
1,757,288	-		GFF1730	0.79	-0.3
1,757,293	+		GFF1730	0.80	-0.8
1,757,307	+		GFF1730	0.80	+0.2
1,757,311	+		GFF1730	0.81	-1.0
1,757,336	+		GFF1730	0.82	-0.3
1,757,336	+		GFF1730	0.82	-0.0
1,757,346	+		GFF1730	0.83	+0.5
1,757,346	+		GFF1730	0.83	-0.4
1,757,346	+		GFF1730	0.83	+0.1
1,757,351	+		GFF1730	0.83	-1.8
1,757,351	+		GFF1730	0.83	+0.2
1,757,354	-		GFF1730	0.83	-0.5
1,757,354	-		GFF1730	0.83	+0.5
1,757,354	-		GFF1730	0.83	-1.1
1,757,369	-		GFF1730	0.84	+0.1
1,757,376	+		GFF1730	0.85	-0.0
1,757,379	+		GFF1730	0.85	-0.2
1,757,414	+		GFF1730	0.87	-0.9
1,757,416	-		GFF1730	0.87	-0.3
1,757,422	-		GFF1730	0.88	-0.4
1,757,437	+		GFF1730	0.89	-0.1
1,757,437	+		GFF1730	0.89	-0.8
1,757,437	+		GFF1730	0.89	-0.2
1,757,445	-		GFF1730	0.89	-0.8
1,757,445	-		GFF1730	0.89	-0.1
1,757,445	-		GFF1730	0.89	-1.3
1,757,445	-		GFF1730	0.89	-0.4
1,757,472	-				-1.6
1,757,472	-				-0.3
1,757,474	-				-1.4
1,757,520	-				-1.0
1,757,542	-				-0.8
1,757,557	+				-0.5
1,757,558	+				-1.5
1,757,558	+				-0.9
1,757,566	-				-1.1
1,757,566	-				+0.1
1,757,584	-				-1.9
1,757,589	-				-0.9
1,757,589	-				-1.5
1,757,589	-				+0.4
1,757,637	+				+0.3
1,757,639	+				+0.2
1,757,658	-				-0.5
1,757,661	+				-0.8
1,757,661	+				+1.4
1,757,661	+				+0.6
1,757,661	+				-0.9
1,757,661	+				+1.6
1,757,661	+				-0.5
1,757,664	-				-0.4
1,757,666	+				-1.1
1,757,669	-				-0.5
1,757,669	-				+0.6
1,757,669	-				+0.1
1,757,669	-				-0.1
1,757,669	-				-0.2
1,757,669	-				-0.5
1,757,669	-				-0.2
1,757,678	+				+0.1
1,757,678	+				-0.7
1,757,679	-				+1.3
1,757,686	-				-0.5
1,757,686	-				-0.2
1,757,695	-				-0.2
1,757,705	-				+0.5
1,757,759	-				+0.6
1,757,776	+				-1.1
1,757,786	-		GFF1731	0.10	+0.9
1,757,787	-		GFF1731	0.11	-0.3
1,757,944	+		GFF1731	0.31	-1.8
1,757,966	-		GFF1731	0.34	-1.1
1,757,993	+		GFF1731	0.38	-1.1
1,757,993	+		GFF1731	0.38	+0.3
1,757,993	+		GFF1731	0.38	+0.9
1,757,993	+		GFF1731	0.38	+0.3
1,757,993	+		GFF1731	0.38	+0.2
1,757,993	+		GFF1731	0.38	-0.8
1,757,993	+		GFF1731	0.38	+0.1
1,757,993	+		GFF1731	0.38	+0.6
1,757,999	-		GFF1731	0.39	+1.0
1,758,001	-		GFF1731	0.39	-0.3
1,758,001	-		GFF1731	0.39	-0.5
1,758,001	-		GFF1731	0.39	-0.6
1,758,001	-		GFF1731	0.39	-0.8
1,758,014	-		GFF1731	0.41	+2.1
1,758,018	+		GFF1731	0.41	-2.5
1,758,033	-		GFF1731	0.43	-0.7
1,758,038	-		GFF1731	0.44	+1.4
1,758,041	+		GFF1731	0.44	+0.6
1,758,049	-		GFF1731	0.45	-0.6
1,758,064	-		GFF1731	0.47	-0.3
1,758,069	-		GFF1731	0.48	+1.9
1,758,095	+		GFF1731	0.51	+0.3
1,758,108	-		GFF1731	0.53	+0.8
1,758,140	-		GFF1731	0.57	-0.7
1,758,227	-		GFF1731	0.69	-0.1
1,758,244	+		GFF1731	0.71	-0.9
1,758,244	+		GFF1731	0.71	-0.1
1,758,260	+		GFF1731	0.73	-0.1
1,758,315	+		GFF1731	0.80	-0.3
1,758,327	+		GFF1731	0.82	-0.6
1,758,336	+		GFF1731	0.83	-0.3
1,758,497	+				-0.2
1,758,497	+				+0.6
1,758,497	+				-0.4
1,758,497	+				+0.9
1,758,497	+				-1.6
1,758,505	-				-0.3
1,758,505	-				+0.8
1,758,505	-				-1.6
1,758,505	-				-2.7
1,758,507	+				-2.3
1,758,509	+				+0.4
1,758,530	+				+1.0
1,758,538	-				-1.6
1,758,540	+				-0.5
1,758,540	+				-0.2
1,758,540	+				-0.7
1,758,540	+				-0.9
1,758,540	+				-1.0
1,758,548	-				-1.9
1,758,548	-				-0.6
1,758,552	+				-1.2
1,758,561	-				-0.6
1,758,564	-				-1.5
1,758,569	-				+0.6
1,758,579	+				+0.2
1,758,621	-				-1.1
1,758,621	-				-2.0
1,758,640	+				-0.4
1,758,640	+				-0.0
1,758,640	+				-0.9
1,758,647	+				-0.4
1,758,653	+				+0.4
1,758,666	+		GFF1732	0.11	-1.4
1,758,678	-		GFF1732	0.13	-0.7
1,758,683	-		GFF1732	0.13	+1.2
1,758,688	-		GFF1732	0.14	-0.4
1,758,712	+		GFF1732	0.17	+0.5
1,758,727	+		GFF1732	0.19	+1.0
1,758,734	+		GFF1732	0.19	-0.5
1,758,739	+		GFF1732	0.20	-1.1
1,758,740	+		GFF1732	0.20	-0.6
1,758,752	-		GFF1732	0.22	+0.3
1,758,752	-		GFF1732	0.22	-0.6
1,758,839	-		GFF1732	0.32	+0.8
1,758,864	-		GFF1732	0.35	-0.2
1,758,875	+		GFF1732	0.36	-0.7
1,758,933	+		GFF1732	0.43	+1.6
1,758,942	+		GFF1732	0.44	-2.1
1,758,952	+		GFF1732	0.45	-1.4
1,758,977	+		GFF1732	0.48	-0.6
1,758,985	-		GFF1732	0.49	+0.1
1,758,985	-		GFF1732	0.49	-1.1
1,758,987	+		GFF1732	0.50	-0.6
1,758,990	-		GFF1732	0.50	-0.0
1,758,995	-		GFF1732	0.50	+1.2
1,759,005	-		GFF1732	0.52	-1.9
1,759,005	-		GFF1732	0.52	+1.6
1,759,006	+		GFF1732	0.52	-0.2
1,759,101	+		GFF1732	0.63	-0.8
1,759,101	+		GFF1732	0.63	+0.0
1,759,108	+		GFF1732	0.64	-2.0
1,759,108	+		GFF1732	0.64	-2.5
1,759,108	+		GFF1732	0.64	-0.0
1,759,108	+		GFF1732	0.64	+0.7
1,759,108	+		GFF1732	0.64	-0.8
1,759,128	+		GFF1732	0.66	-0.6
1,759,146	-		GFF1732	0.68	-0.8
1,759,146	-		GFF1732	0.68	-0.4
1,759,189	+		GFF1732	0.74	-0.1
1,759,189	+		GFF1732	0.74	-0.4
1,759,211	+		GFF1732	0.76	-1.1
1,759,224	-		GFF1732	0.78	-0.5
1,759,386	+				-1.0
1,759,388	+				+0.5
1,759,408	+				+0.3