Strain Fitness in Sphingobium sp. HT1-2 around GFF1730

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,755,052	-		GFF1727	0.75	+1.5
1,755,061	-		GFF1727	0.76	-0.8
1,755,069	+		GFF1727	0.76	-0.7
1,755,079	+		GFF1727	0.77	-0.6
1,755,089	+		GFF1727	0.78	-0.2
1,755,095	-		GFF1727	0.78	-0.9
1,755,105	-		GFF1727	0.79	-0.9
1,755,114	+		GFF1727	0.79	-0.3
1,755,114	+		GFF1727	0.79	-1.7
1,755,114	+		GFF1727	0.79	-0.6
1,755,114	+		GFF1727	0.79	-1.3
1,755,114	+		GFF1727	0.79	-1.4
1,755,114	+		GFF1727	0.79	-2.1
1,755,117	-		GFF1727	0.80	-1.2
1,755,122	-		GFF1727	0.80	-0.2
1,755,122	-		GFF1727	0.80	-2.6
1,755,122	-		GFF1727	0.80	-0.8
1,755,122	-		GFF1727	0.80	+0.1
1,755,122	-		GFF1727	0.80	-1.6
1,755,126	+		GFF1727	0.80	-2.0
1,755,126	+		GFF1727	0.80	-1.1
1,755,126	+		GFF1727	0.80	+1.0
1,755,126	+		GFF1727	0.80	+1.6
1,755,126	+		GFF1727	0.80	-1.1
1,755,126	+		GFF1727	0.80	-1.0
1,755,126	-		GFF1727	0.80	+2.2
1,755,128	+		GFF1727	0.80	-1.4
1,755,129	-		GFF1727	0.81	-1.5
1,755,134	-		GFF1727	0.81	+1.7
1,755,134	-		GFF1727	0.81	-0.5
1,755,134	-		GFF1727	0.81	+0.0
1,755,180	+		GFF1727	0.84	-0.3
1,755,188	-		GFF1727	0.85	-0.0
1,755,253	-		GFF1727	0.89	-0.7
1,755,255	+		GFF1727	0.90	-2.0
1,755,255	+		GFF1727	0.90	+0.2
1,755,333	-				-1.5
1,755,349	-				+0.5
1,755,388	+				+0.0
1,755,395	+				-1.9
1,755,410	-				+0.8
1,755,447	+		GFF1728	0.13	+0.9
1,755,463	+		GFF1728	0.17	-0.1
1,755,507	+		GFF1728	0.28	+1.5
1,755,508	-		GFF1728	0.28	-0.9
1,755,541	+		GFF1728	0.37	-0.5
1,755,549	+		GFF1728	0.39	+0.5
1,755,549	+		GFF1728	0.39	-0.5
1,755,549	+		GFF1728	0.39	-1.1
1,755,557	-		GFF1728	0.41	+0.1
1,755,557	-		GFF1728	0.41	-0.8
1,755,557	-		GFF1728	0.41	-0.6
1,755,557	-		GFF1728	0.41	-1.2
1,755,567	-		GFF1728	0.44	-0.1
1,755,609	+		GFF1728	0.55	+0.3
1,755,617	-		GFF1728	0.57	+0.9
1,755,619	+		GFF1728	0.57	+0.5
1,755,624	+		GFF1728	0.58	-0.7
1,755,624	+		GFF1728	0.58	-0.4
1,755,624	+		GFF1728	0.58	-0.5
1,755,624	+		GFF1728	0.58	-1.8
1,755,627	-		GFF1728	0.59	-0.9
1,755,630	-		GFF1728	0.60	+0.4
1,755,632	-		GFF1728	0.60	-0.7
1,755,632	-		GFF1728	0.60	-1.2
1,755,632	-		GFF1728	0.60	-1.7
1,755,645	+		GFF1728	0.64	-0.4
1,755,645	+		GFF1728	0.64	-0.7
1,755,652	-		GFF1728	0.66	-1.1
1,755,673	+		GFF1728	0.71	-0.5
1,755,693	-		GFF1728	0.76	+0.5
1,755,701	+		GFF1728	0.78	+0.1
1,755,709	-		GFF1728	0.80	-0.5
1,755,755	-				+0.4
1,755,755	-				-0.9
1,755,757	+				-0.6
1,755,757	+				-0.3
1,755,768	+				-0.7
1,755,778	+				-0.5
1,755,824	-		GFF1729	0.17	+0.1
1,755,844	-		GFF1729	0.28	-0.2
1,755,860	-		GFF1729	0.37	-1.0
1,755,861	+		GFF1729	0.38	+0.1
1,755,870	-		GFF1729	0.43	-1.3
1,755,874	-		GFF1729	0.45	+1.5
1,755,875	+		GFF1729	0.46	-2.4
1,755,880	+		GFF1729	0.49	-0.2
1,755,888	-		GFF1729	0.53	-0.9
1,755,905	+		GFF1729	0.63	+0.5
1,755,905	+		GFF1729	0.63	-1.5
1,755,905	+		GFF1729	0.63	-0.1
1,755,913	-		GFF1729	0.67	-1.6
1,755,913	-		GFF1729	0.67	-0.2
1,755,913	-		GFF1729	0.67	+0.1
1,755,913	-		GFF1729	0.67	-0.8
1,755,913	-		GFF1729	0.67	+0.5
1,755,936	-		GFF1729	0.80	-0.8
1,755,966	+				+0.2
1,755,984	-				-1.8
1,755,984	-				-0.5
1,755,984	-				+0.6
1,755,994	+				+1.1
1,755,994	-				+0.7
1,756,041	+				-0.3
1,756,041	+				-0.3
1,756,041	+				-0.1
1,756,041	+				-0.1
1,756,049	-				+0.9
1,756,049	-				-1.5
1,756,049	-				-1.4
1,756,059	+				+0.2
1,756,059	+				+0.9
1,756,060	+				+1.3
1,756,060	+				+0.1
1,756,061	+				-1.2
1,756,067	-				+0.4
1,756,068	-				-0.5
1,756,075	+				+1.1
1,756,075	+				-0.1
1,756,075	+				-0.3
1,756,083	-				+1.3
1,756,089	+				-0.6
1,756,094	+				-2.2
1,756,121	-				+0.8
1,756,128	-				+0.5
1,756,142	+				+0.8
1,756,189	-				-0.3
1,756,192	+				+0.7
1,756,192	+				-0.2
1,756,192	+				+0.7
1,756,198	-				+0.8
1,756,198	-				+0.2
1,756,224	-		GFF1730	0.11	+0.2
1,756,238	-		GFF1730	0.12	-0.9
1,756,238	-		GFF1730	0.12	+0.6
1,756,252	+		GFF1730	0.13	-0.0
1,756,257	-		GFF1730	0.14	-0.9
1,756,262	-		GFF1730	0.14	-1.8
1,756,266	-		GFF1730	0.14	-0.5
1,756,299	+		GFF1730	0.16	-2.5
1,756,325	+		GFF1730	0.18	-0.1
1,756,332	-		GFF1730	0.18	-0.9
1,756,332	-		GFF1730	0.18	-1.5
1,756,354	-		GFF1730	0.20	+0.8
1,756,364	+		GFF1730	0.20	-0.3
1,756,368	+		GFF1730	0.21	-0.9
1,756,374	+		GFF1730	0.21	-0.3
1,756,382	-		GFF1730	0.21	+0.1
1,756,384	+		GFF1730	0.22	-0.1
1,756,418	-		GFF1730	0.24	+0.8
1,756,425	-		GFF1730	0.24	-0.5
1,756,425	-		GFF1730	0.24	-0.5
1,756,428	+		GFF1730	0.24	+0.6
1,756,436	-		GFF1730	0.25	+0.4
1,756,441	-		GFF1730	0.25	+0.6
1,756,461	-		GFF1730	0.27	-1.7
1,756,468	-		GFF1730	0.27	+0.7
1,756,471	-		GFF1730	0.27	+0.2
1,756,476	+		GFF1730	0.27	-0.9
1,756,484	-		GFF1730	0.28	+0.1
1,756,485	+		GFF1730	0.28	+1.2
1,756,485	+		GFF1730	0.28	-0.3
1,756,493	-		GFF1730	0.29	+1.2
1,756,504	+		GFF1730	0.29	-0.0
1,756,512	-		GFF1730	0.30	-0.1
1,756,512	-		GFF1730	0.30	+0.2
1,756,512	-		GFF1730	0.30	-0.5
1,756,516	+		GFF1730	0.30	-0.3
1,756,526	+		GFF1730	0.31	+1.0
1,756,545	+		GFF1730	0.32	-0.2
1,756,576	-		GFF1730	0.34	+1.5
1,756,577	-		GFF1730	0.34	-1.5
1,756,578	+		GFF1730	0.34	-0.1
1,756,587	-		GFF1730	0.35	-0.5
1,756,593	+		GFF1730	0.35	-1.7
1,756,611	-		GFF1730	0.36	-0.5
1,756,629	+		GFF1730	0.37	-1.8
1,756,629	+		GFF1730	0.37	-1.7
1,756,629	+		GFF1730	0.37	-0.6
1,756,629	+		GFF1730	0.37	+0.5
1,756,632	-		GFF1730	0.37	-0.8
1,756,637	-		GFF1730	0.38	-0.3
1,756,639	-		GFF1730	0.38	-0.9
1,756,642	+		GFF1730	0.38	-1.1
1,756,642	+		GFF1730	0.38	-0.9
1,756,645	-		GFF1730	0.38	+1.4
1,756,645	-		GFF1730	0.38	-1.1
1,756,645	-		GFF1730	0.38	-0.1
1,756,661	+		GFF1730	0.39	-1.6
1,756,661	+		GFF1730	0.39	+0.1
1,756,662	+		GFF1730	0.39	-1.7
1,756,685	+		GFF1730	0.41	+0.8
1,756,685	+		GFF1730	0.41	-2.2
1,756,693	-		GFF1730	0.41	+0.3
1,756,710	+		GFF1730	0.42	-0.7
1,756,723	-		GFF1730	0.43	-1.6
1,756,725	-		GFF1730	0.43	+0.7
1,756,725	-		GFF1730	0.43	-0.6
1,756,730	+		GFF1730	0.44	+0.1
1,756,730	-		GFF1730	0.44	-1.2
1,756,732	+		GFF1730	0.44	-1.4
1,756,732	+		GFF1730	0.44	+0.1
1,756,738	-		GFF1730	0.44	-0.3
1,756,740	-		GFF1730	0.44	-0.8
1,756,740	-		GFF1730	0.44	+0.7
1,756,741	-		GFF1730	0.44	-1.8
1,756,747	+		GFF1730	0.45	-0.6
1,756,752	+		GFF1730	0.45	-1.1
1,756,752	+		GFF1730	0.45	-0.1
1,756,753	+		GFF1730	0.45	-0.1
1,756,755	-		GFF1730	0.45	-0.1
1,756,759	+		GFF1730	0.46	-2.1
1,756,759	+		GFF1730	0.46	-1.2
1,756,761	-		GFF1730	0.46	+0.9
1,756,769	+		GFF1730	0.46	-0.4
1,756,777	-		GFF1730	0.47	-0.8
1,756,778	+		GFF1730	0.47	-0.4
1,756,783	-		GFF1730	0.47	-0.2
1,756,811	+		GFF1730	0.49	-0.7
1,756,814	-		GFF1730	0.49	-0.1
1,756,816	-		GFF1730	0.49	-0.5
1,756,819	+		GFF1730	0.49	+0.6
1,756,819	-		GFF1730	0.49	-1.1
1,756,819	-		GFF1730	0.49	+0.4
1,756,837	-		GFF1730	0.50	-1.1
1,756,840	-		GFF1730	0.51	+0.1
1,756,843	+		GFF1730	0.51	+0.5
1,756,847	+		GFF1730	0.51	-0.8
1,756,847	+		GFF1730	0.51	-1.1
1,756,847	+		GFF1730	0.51	-0.8
1,756,847	+		GFF1730	0.51	-0.2
1,756,850	-		GFF1730	0.51	-1.7
1,756,852	+		GFF1730	0.51	-0.1
1,756,852	+		GFF1730	0.51	-1.1
1,756,853	+		GFF1730	0.51	+0.4
1,756,855	-		GFF1730	0.52	-1.5
1,756,855	-		GFF1730	0.52	+0.8
1,756,855	-		GFF1730	0.52	-0.1
1,756,855	-		GFF1730	0.52	-0.9
1,756,855	-		GFF1730	0.52	-1.0
1,756,855	-		GFF1730	0.52	-1.3
1,756,889	+		GFF1730	0.54	+0.2
1,756,897	-		GFF1730	0.54	-0.2
1,756,915	-		GFF1730	0.55	-1.9
1,756,924	+		GFF1730	0.56	-0.4
1,756,930	-		GFF1730	0.56	-1.6
1,756,932	-		GFF1730	0.57	-2.1
1,756,979	+		GFF1730	0.60	+0.4
1,756,996	+		GFF1730	0.61	-1.4
1,756,996	+		GFF1730	0.61	-1.1
1,757,004	-		GFF1730	0.61	+0.7
1,757,004	-		GFF1730	0.61	+0.3
1,757,055	-		GFF1730	0.64	-0.7
1,757,057	+		GFF1730	0.64	+0.5
1,757,065	-		GFF1730	0.65	+0.2
1,757,065	-		GFF1730	0.65	+0.8
1,757,074	-		GFF1730	0.66	-1.5
1,757,076	+		GFF1730	0.66	-0.9
1,757,081	+		GFF1730	0.66	+0.5
1,757,084	-		GFF1730	0.66	+1.4
1,757,084	-		GFF1730	0.66	-0.8
1,757,109	-		GFF1730	0.68	-1.3
1,757,128	-		GFF1730	0.69	-1.2
1,757,151	+		GFF1730	0.70	-1.0
1,757,159	-		GFF1730	0.71	-0.9
1,757,163	+		GFF1730	0.71	-0.5
1,757,169	+		GFF1730	0.72	+0.4
1,757,171	+		GFF1730	0.72	-1.3
1,757,171	+		GFF1730	0.72	+1.9
1,757,171	+		GFF1730	0.72	-0.4
1,757,171	+		GFF1730	0.72	-0.5
1,757,176	+		GFF1730	0.72	+0.5
1,757,179	-		GFF1730	0.72	-0.4
1,757,179	-		GFF1730	0.72	-1.3
1,757,179	-		GFF1730	0.72	-1.3
1,757,179	-		GFF1730	0.72	-0.7
1,757,179	-		GFF1730	0.72	+0.1
1,757,181	+		GFF1730	0.72	-0.4
1,757,184	-		GFF1730	0.73	-1.1
1,757,184	-		GFF1730	0.73	+0.8
1,757,198	+		GFF1730	0.73	-0.5
1,757,206	-		GFF1730	0.74	-0.9
1,757,226	+		GFF1730	0.75	+0.1
1,757,250	-		GFF1730	0.77	-0.4
1,757,280	+		GFF1730	0.79	+1.5
1,757,280	+		GFF1730	0.79	+0.3
1,757,280	+		GFF1730	0.79	-0.5
1,757,280	+		GFF1730	0.79	-0.2
1,757,288	-		GFF1730	0.79	-1.4
1,757,288	-		GFF1730	0.79	-0.4
1,757,288	-		GFF1730	0.79	-0.8
1,757,288	-		GFF1730	0.79	-1.8
1,757,288	-		GFF1730	0.79	-1.6
1,757,288	-		GFF1730	0.79	-0.2
1,757,288	-		GFF1730	0.79	-0.3
1,757,293	+		GFF1730	0.80	-0.8
1,757,307	+		GFF1730	0.80	+0.2
1,757,311	+		GFF1730	0.81	-1.0
1,757,336	+		GFF1730	0.82	-0.3
1,757,336	+		GFF1730	0.82	-0.0
1,757,346	+		GFF1730	0.83	+0.5
1,757,346	+		GFF1730	0.83	-0.4
1,757,346	+		GFF1730	0.83	+0.1
1,757,351	+		GFF1730	0.83	-1.8
1,757,351	+		GFF1730	0.83	+0.2
1,757,354	-		GFF1730	0.83	-0.5
1,757,354	-		GFF1730	0.83	+0.5
1,757,354	-		GFF1730	0.83	-1.1
1,757,369	-		GFF1730	0.84	+0.1
1,757,376	+		GFF1730	0.85	-0.0
1,757,379	+		GFF1730	0.85	-0.2
1,757,414	+		GFF1730	0.87	-0.9
1,757,416	-		GFF1730	0.87	-0.3
1,757,422	-		GFF1730	0.88	-0.4
1,757,437	+		GFF1730	0.89	-0.1
1,757,437	+		GFF1730	0.89	-0.8
1,757,437	+		GFF1730	0.89	-0.2
1,757,445	-		GFF1730	0.89	-0.8
1,757,445	-		GFF1730	0.89	-0.1
1,757,445	-		GFF1730	0.89	-1.3
1,757,445	-		GFF1730	0.89	-0.4
1,757,472	-				-1.6
1,757,472	-				-0.3
1,757,474	-				-1.4
1,757,520	-				-1.0
1,757,542	-				-0.8
1,757,557	+				-0.5
1,757,558	+				-1.5
1,757,558	+				-0.9
1,757,566	-				-1.1
1,757,566	-				+0.1
1,757,584	-				-1.9
1,757,589	-				-0.9
1,757,589	-				-1.5
1,757,589	-				+0.4
1,757,637	+				+0.3
1,757,639	+				+0.2
1,757,658	-				-0.5
1,757,661	+				-0.8
1,757,661	+				+1.4
1,757,661	+				+0.6
1,757,661	+				-0.9
1,757,661	+				+1.6
1,757,661	+				-0.5
1,757,664	-				-0.4
1,757,666	+				-1.1
1,757,669	-				-0.5
1,757,669	-				+0.6
1,757,669	-				+0.1
1,757,669	-				-0.1
1,757,669	-				-0.2
1,757,669	-				-0.5
1,757,669	-				-0.2
1,757,678	+				+0.1
1,757,678	+				-0.7
1,757,679	-				+1.3
1,757,686	-				-0.5
1,757,686	-				-0.2
1,757,695	-				-0.2
1,757,705	-				+0.5
1,757,759	-				+0.6
1,757,776	+				-1.1
1,757,786	-		GFF1731	0.10	+0.9
1,757,787	-		GFF1731	0.11	-0.3
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