Strain Fitness in Sphingobium sp. HT1-2 around GFF1634

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,661,175	-		GFF1632	0.83	-0.2
1,661,176	+		GFF1632	0.83	+1.5
1,661,191	+		GFF1632	0.84	-0.7
1,661,199	-		GFF1632	0.84	-0.9
1,661,217	-		GFF1632	0.86	-0.2
1,661,227	-		GFF1632	0.87	+1.6
1,661,253	+		GFF1632	0.89	-2.2
1,661,266	-		GFF1632	0.90	-1.6
1,661,276	+				+0.9
1,661,276	+				+1.6
1,661,276	+				-0.0
1,661,284	-				-0.4
1,661,284	-				+0.5
1,661,298	+				-0.2
1,661,298	+				-0.2
1,661,298	+				+1.5
1,661,342	+				-0.8
1,661,343	+				-1.2
1,661,350	+				-1.0
1,661,351	+				-1.2
1,661,355	+				-0.7
1,661,355	+				-0.8
1,661,355	+				-0.8
1,661,357	+				-2.1
1,661,363	-				-1.6
1,661,371	+				-0.7
1,661,406	+				+0.6
1,661,424	-				+1.0
1,661,455	+				+0.9
1,661,466	-				-1.2
1,661,485	-				+0.5
1,661,490	+				+0.2
1,661,493	-				-1.5
1,661,498	-				+0.9
1,661,498	-				+2.1
1,661,503	-				+0.3
1,661,528	+				-0.4
1,661,528	+				+0.8
1,661,528	+				-0.9
1,661,528	+				+1.0
1,661,528	+				-1.8
1,661,528	+				-0.7
1,661,528	+				+0.0
1,661,536	-				-0.6
1,661,536	-				-1.5
1,661,536	-				+0.1
1,661,536	-				-0.1
1,661,560	+		GFF1633	0.11	+0.3
1,661,560	+		GFF1633	0.11	+1.0
1,661,563	-		GFF1633	0.11	-1.0
1,661,565	+		GFF1633	0.12	-0.2
1,661,568	-		GFF1633	0.12	+0.3
1,661,568	-		GFF1633	0.12	+0.3
1,661,570	+		GFF1633	0.13	-1.2
1,661,573	+		GFF1633	0.13	-0.4
1,661,573	-		GFF1633	0.13	+0.2
1,661,575	+		GFF1633	0.14	-1.7
1,661,578	-		GFF1633	0.14	+1.4
1,661,583	-		GFF1633	0.16	-1.0
1,661,583	-		GFF1633	0.16	-1.6
1,661,583	-		GFF1633	0.16	+0.1
1,661,622	-		GFF1633	0.24	+0.3
1,661,662	+		GFF1633	0.32	-0.2
1,661,674	+		GFF1633	0.34	+0.2
1,661,675	-		GFF1633	0.35	+0.4
1,661,675	-		GFF1633	0.35	-1.8
1,661,710	-		GFF1633	0.42	-1.3
1,661,728	+		GFF1633	0.46	-0.2
1,661,728	-		GFF1633	0.46	-1.5
1,661,731	-		GFF1633	0.46	-0.5
1,661,755	-		GFF1633	0.51	-1.2
1,661,755	-		GFF1633	0.51	-0.6
1,661,755	-		GFF1633	0.51	+0.2
1,661,804	+		GFF1633	0.61	-1.0
1,661,804	+		GFF1633	0.61	-0.9
1,661,807	-		GFF1633	0.62	+0.6
1,661,812	-		GFF1633	0.63	-1.0
1,661,812	-		GFF1633	0.63	+0.5
1,661,812	-		GFF1633	0.63	-0.5
1,661,813	-		GFF1633	0.63	-1.4
1,661,819	-		GFF1633	0.64	-0.1
1,661,819	-		GFF1633	0.64	+0.2
1,661,850	-		GFF1633	0.71	-1.2
1,661,854	-		GFF1633	0.72	-1.2
1,661,858	+		GFF1633	0.72	-0.2
1,661,859	-		GFF1633	0.73	-1.2
1,661,859	-		GFF1633	0.73	+0.8
1,661,865	+		GFF1633	0.74	-0.6
1,661,881	+		GFF1633	0.77	+1.0
1,661,882	+		GFF1633	0.77	-1.0
1,661,882	+		GFF1633	0.77	-1.1
1,661,907	+		GFF1633	0.83	-0.2
1,661,914	+		GFF1633	0.84	-2.2
1,661,914	+		GFF1633	0.84	-0.7
1,661,914	+		GFF1633	0.84	+0.2
1,661,914	+		GFF1633	0.84	-0.8
1,661,914	+		GFF1633	0.84	+0.3
1,661,914	+		GFF1633	0.84	+0.3
1,661,930	-		GFF1633	0.87	-0.4
1,661,935	-		GFF1633	0.88	-0.6
1,661,935	-		GFF1633	0.88	-0.4
1,661,937	+		GFF1633	0.89	+0.9
1,661,943	+				+0.7
1,661,947	-				-0.2
1,661,949	+				-1.8
1,661,959	+				+0.4
1,661,961	+				-0.7
1,661,968	+				-0.4
1,661,968	+				-1.6
1,661,996	+				-2.0
1,661,996	+				+0.4
1,661,996	-				-0.6
1,662,004	-				+1.7
1,662,004	-				-0.5
1,662,004	-				+1.3
1,662,023	+				-2.3
1,662,026	-				-1.1
1,662,059	-				-0.1
1,662,062	+				-0.3
1,662,083	-				-0.7
1,662,085	+				-0.6
1,662,088	+				-0.1
1,662,096	+				-1.5
1,662,098	+				+0.8
1,662,199	+				+0.3
1,662,199	+				+0.4
1,662,199	+				+0.3
1,662,199	+				-0.8
1,662,199	+				+1.3
1,662,199	+				-0.4
1,662,199	+				-0.4
1,662,199	+				-0.1
1,662,204	+				-0.5
1,662,204	+				-1.1
1,662,204	+				+0.5
1,662,207	-				-0.5
1,662,207	-				+0.3
1,662,207	-				+1.9
1,662,207	-				+0.0
1,662,207	-				-0.6
1,662,207	-				-0.1
1,662,207	-				+0.6
1,662,207	-				-0.1
1,662,207	-				-1.5
1,662,207	-				+0.4
1,662,212	-				-1.3
1,662,212	-				+0.8
1,662,212	-				-0.5
1,662,212	-				-0.7
1,662,212	-				-1.0
1,662,212	-				-0.4
1,662,212	-				+0.0
1,662,212	-				+0.3
1,662,222	-				+2.3
1,662,240	-				-0.4
1,662,267	+				-1.2
1,662,268	+				-0.6
1,662,269	+				-0.4
1,662,275	-				-0.6
1,662,321	+		GFF1634	0.11	+0.2
1,662,352	-		GFF1634	0.14	-0.5
1,662,399	+		GFF1634	0.17	+0.8
1,662,399	+		GFF1634	0.17	-1.1
1,662,458	+		GFF1634	0.21	+0.6
1,662,477	+		GFF1634	0.23	-1.9
1,662,537	+		GFF1634	0.27	+0.0
1,662,543	+		GFF1634	0.28	+1.3
1,662,543	+		GFF1634	0.28	-0.9
1,662,551	-		GFF1634	0.28	-0.7
1,662,609	-		GFF1634	0.32	+2.0
1,662,612	+		GFF1634	0.33	+0.7
1,662,650	+		GFF1634	0.35	-1.0
1,662,695	+		GFF1634	0.39	-1.1
1,662,703	+		GFF1634	0.39	+0.6
1,662,760	+		GFF1634	0.43	+0.2
1,662,790	+		GFF1634	0.46	+1.3
1,662,797	-		GFF1634	0.46	-0.1
1,662,807	+		GFF1634	0.47	-2.4
1,662,807	+		GFF1634	0.47	-0.7
1,662,815	-		GFF1634	0.48	-0.1
1,662,817	+		GFF1634	0.48	-0.6
1,662,825	+		GFF1634	0.48	-0.4
1,662,825	-		GFF1634	0.48	+1.5
1,662,825	-		GFF1634	0.48	-0.4
1,662,833	-		GFF1634	0.49	-0.7
1,662,909	+		GFF1634	0.54	-1.5
1,662,917	-		GFF1634	0.55	-0.7
1,662,982	+		GFF1634	0.60	+0.8
1,662,990	-		GFF1634	0.60	-1.2
1,663,022	+		GFF1634	0.63	+0.3
1,663,027	+		GFF1634	0.63	-1.2
1,663,085	+		GFF1634	0.67	+0.5
1,663,115	+		GFF1634	0.69	-0.1
1,663,201	+		GFF1634	0.76	+0.3
1,663,201	+		GFF1634	0.76	+1.0
1,663,201	-		GFF1634	0.76	-0.5
1,663,216	+		GFF1634	0.77	+0.9
1,663,239	-		GFF1634	0.79	+0.7
1,663,249	-		GFF1634	0.79	+0.2
1,663,253	+		GFF1634	0.80	+0.3
1,663,284	-		GFF1634	0.82	-0.6
1,663,292	+		GFF1634	0.82	-0.3
1,663,295	-		GFF1634	0.83	-2.1
1,663,311	-		GFF1634	0.84	-0.4
1,663,311	-		GFF1634	0.84	-0.0
1,663,339	+		GFF1634	0.86	-0.4
1,663,339	+		GFF1634	0.86	-0.7
1,663,339	+		GFF1634	0.86	-1.5
1,663,339	+		GFF1634	0.86	-0.2
1,663,345	+		GFF1634	0.86	-0.2
1,663,356	+		GFF1634	0.87	+1.0
1,663,379	-		GFF1634	0.89	-0.2
1,663,381	+		GFF1634	0.89	-0.7
1,663,381	+		GFF1634	0.89	+1.2
1,663,424	-				-0.6
1,663,426	+				+0.4
1,663,426	+				+0.5
1,663,434	-				-0.2
1,663,434	-				+1.0
1,663,462	-				+1.0
1,663,483	+				+0.2
1,663,483	+				-1.7
1,663,483	+				-0.2
1,663,488	+				+0.5
1,663,491	-				-0.9
1,663,491	-				+1.0
1,663,491	-				-1.1
1,663,510	-				+0.6
1,663,544	+				-0.0
1,663,579	+				-0.5
1,663,579	+				-1.0
1,663,598	+		GFF1635	0.12	+0.9
1,663,644	+		GFF1635	0.21	-0.1
1,663,652	-		GFF1635	0.22	-2.1
1,663,669	-		GFF1635	0.25	-0.8
1,663,733	-		GFF1635	0.37	+1.0
1,663,753	+		GFF1635	0.40	-0.5
1,663,753	+		GFF1635	0.40	-1.0
1,663,753	+		GFF1635	0.40	-0.1
1,663,753	+		GFF1635	0.40	+0.3
1,663,753	+		GFF1635	0.40	+0.8
1,663,753	+		GFF1635	0.40	+0.4
1,663,753	+		GFF1635	0.40	-0.1
1,663,753	+		GFF1635	0.40	-0.7
1,663,753	+		GFF1635	0.40	-1.0
1,663,753	+		GFF1635	0.40	+0.5
1,663,756	-		GFF1635	0.41	-0.6
1,663,761	-		GFF1635	0.42	-1.2
1,663,761	-		GFF1635	0.42	+0.3
1,663,802	-		GFF1635	0.49	-0.1
1,663,817	+		GFF1635	0.52	-0.1
1,663,825	-		GFF1635	0.53	-0.1
1,663,844	-		GFF1635	0.57	+0.8
1,663,850	-		GFF1635	0.58	-0.4
1,663,872	+		GFF1635	0.62	+1.0
1,663,883	+		GFF1635	0.64	-0.8
1,663,891	-		GFF1635	0.65	+0.9
1,663,893	-		GFF1635	0.66	-1.2
1,663,901	+		GFF1635	0.67	-0.5
1,663,909	-		GFF1635	0.68	-0.9
1,663,909	-		GFF1635	0.68	+2.2
1,663,909	-		GFF1635	0.68	-0.2
1,663,933	+		GFF1635	0.73	+1.3
1,663,933	+		GFF1635	0.73	-0.5
1,663,934	+		GFF1635	0.73	+0.8
1,663,936	-		GFF1635	0.73	-0.8
1,663,952	+		GFF1635	0.76	-0.6
1,663,952	-		GFF1635	0.76	-0.1
1,663,960	-		GFF1635	0.78	-1.0
1,664,001	-		GFF1635	0.85	+0.6
1,664,035	+				-0.3
1,664,040	+				-0.4
1,664,045	+				-1.6
1,664,055	+				+0.3
1,664,058	-				-0.2
1,664,060	+				-1.5
1,664,062	+				+0.9
1,664,063	-				-0.9
1,664,063	-				+0.0
1,664,063	-				+0.5
1,664,068	-				+0.1
1,664,068	-				-0.7
1,664,070	-				+0.0
1,664,070	-				-0.9
1,664,080	-				-1.8
1,664,080	-				-1.0
1,664,080	-				-0.1
1,664,080	-				-0.6
1,664,095	+				+0.8
1,664,096	+				-1.8
1,664,102	+				-0.9
1,664,104	+				+0.1
1,664,111	-				-0.4
1,664,111	-				-1.4
1,664,114	+				-1.2
1,664,117	-				-0.7
1,664,124	-				-0.8
1,664,124	-				+1.5
1,664,124	-				-0.1
1,664,138	+				+0.0
1,664,138	+				-1.9
1,664,138	+				-0.2
1,664,138	+				+1.2
1,664,138	+				-1.5
1,664,146	-				-1.8
1,664,146	-				+1.3
1,664,146	-				+2.2
1,664,146	-				-0.1
1,664,146	-				+0.7
1,664,153	-				+1.2
1,664,158	-				-0.4
1,664,178	-				-1.0
1,664,188	+				-0.5
1,664,237	+		GFF1636	0.15	-0.2
1,664,253	+		GFF1636	0.18	-0.0
1,664,263	-		GFF1636	0.20	+0.6
1,664,267	+		GFF1636	0.21	+0.5
1,664,269	+		GFF1636	0.21	-1.6
1,664,294	+		GFF1636	0.26	-2.1
1,664,302	-		GFF1636	0.28	-0.9
1,664,302	-		GFF1636	0.28	-1.0
1,664,304	+		GFF1636	0.28	-0.8
1,664,305	+		GFF1636	0.28	+2.1
1,664,305	+		GFF1636	0.28	+0.5
1,664,358	+		GFF1636	0.38	+0.0
1,664,371	+		GFF1636	0.41	+0.8
1,664,371	+		GFF1636	0.41	+0.1
1,664,379	-		GFF1636	0.42	-0.7
1,664,379	-		GFF1636	0.42	-0.6
1,664,389	+		GFF1636	0.44	-0.2
1,664,444	+		GFF1636	0.54	+0.5
1,664,444	+		GFF1636	0.54	+2.1
1,664,453	+		GFF1636	0.56	-0.3
1,664,453	+		GFF1636	0.56	+0.7
1,664,461	+		GFF1636	0.58	-1.5
1,664,461	+		GFF1636	0.58	-0.1
1,664,461	+		GFF1636	0.58	-0.2
1,664,461	+		GFF1636	0.58	-1.0
1,664,467	-		GFF1636	0.59	-1.7
1,664,469	-		GFF1636	0.59	-1.0
1,664,482	+		GFF1636	0.62	+0.0
1,664,482	+		GFF1636	0.62	-0.9
1,664,482	+		GFF1636	0.62	+0.2
1,664,482	+		GFF1636	0.62	-0.9
1,664,490	-		GFF1636	0.63	-0.0
1,664,493	+		GFF1636	0.64	-0.1
1,664,493	+		GFF1636	0.64	-0.7
1,664,501	-		GFF1636	0.65	-1.4
1,664,516	+		GFF1636	0.68	+0.2
1,664,516	+		GFF1636	0.68	-0.1
1,664,517	+		GFF1636	0.68	-0.1
1,664,518	+		GFF1636	0.68	-1.0
1,664,524	-		GFF1636	0.69	-0.3
1,664,526	+		GFF1636	0.70	+0.2
1,664,526	+		GFF1636	0.70	-0.6
1,664,526	+		GFF1636	0.70	-0.3
1,664,526	+		GFF1636	0.70	-0.2
1,664,526	+		GFF1636	0.70	-0.6
1,664,526	+		GFF1636	0.70	-0.5
1,664,526	+		GFF1636	0.70	-2.0
1,664,526	+		GFF1636	0.70	+0.6
1,664,526	+		GFF1636	0.70	+0.2
1,664,526	+		GFF1636	0.70	-0.7
1,664,526	+		GFF1636	0.70	-0.6