Strain Fitness in Sphingobium sp. HT1-2 around GFF1619

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,644,739	-				+0.2
1,644,742	-				-0.7
1,644,766	-				-0.2
1,644,766	-				-0.4
1,644,946	+				-1.0
1,644,954	-				+0.8
1,644,964	+				+0.4
1,644,967	-				+0.6
1,644,973	-				+0.3
1,644,973	-				-1.3
1,644,999	+				-0.6
1,644,999	+				-0.1
1,644,999	+				+0.8
1,645,007	-				-0.2
1,645,007	-				+0.2
1,645,007	-				-0.4
1,645,098	+				-0.7
1,645,161	-		GFF1618	0.15	-1.8
1,645,261	-		GFF1618	0.36	-0.7
1,645,281	+		GFF1618	0.40	-0.2
1,645,289	-		GFF1618	0.42	-0.1
1,645,326	+		GFF1618	0.50	-0.2
1,645,393	+		GFF1618	0.64	+0.6
1,645,401	-		GFF1618	0.66	+0.1
1,645,441	-		GFF1618	0.74	-0.5
1,645,499	+		GFF1618	0.86	-0.1
1,645,557	+				+0.9
1,645,557	+				-2.1
1,645,557	+				+0.3
1,645,562	+				-1.0
1,645,562	+				+0.1
1,645,565	-				-1.4
1,645,565	-				+1.3
1,645,565	-				-1.7
1,645,580	-				+0.2
1,645,580	-				+0.6
1,645,593	+				-0.6
1,645,615	-				-0.8
1,645,677	+				+0.5
1,645,685	-				-1.0
1,645,685	-				-1.3
1,645,685	-				-0.2
1,645,700	-				-0.4
1,645,708	+				-0.4
1,645,712	+				+0.4
1,645,712	+				-0.6
1,645,720	-				-1.3
1,645,725	-				+1.0
1,645,761	+				-1.7
1,645,766	+				-1.0
1,645,769	-				+0.0
1,645,774	-				-1.9
1,645,813	-		GFF1619	0.12	+0.0
1,645,823	-		GFF1619	0.13	+1.4
1,645,825	-		GFF1619	0.13	+0.4
1,645,828	+		GFF1619	0.13	-0.5
1,645,832	+		GFF1619	0.14	-0.2
1,645,832	+		GFF1619	0.14	+1.9
1,645,838	+		GFF1619	0.14	-1.3
1,645,838	+		GFF1619	0.14	-0.2
1,645,838	+		GFF1619	0.14	-0.1
1,645,841	-		GFF1619	0.14	+0.2
1,645,841	-		GFF1619	0.14	-0.2
1,645,848	+		GFF1619	0.15	-1.3
1,645,848	+		GFF1619	0.15	-1.6
1,645,848	+		GFF1619	0.15	-0.6
1,645,851	-		GFF1619	0.15	+0.7
1,645,854	+		GFF1619	0.15	+0.3
1,645,856	-		GFF1619	0.15	-1.6
1,645,856	-		GFF1619	0.15	-0.9
1,645,856	-		GFF1619	0.15	-0.2
1,645,859	+		GFF1619	0.16	-2.0
1,645,859	+		GFF1619	0.16	-2.6
1,645,862	-		GFF1619	0.16	+0.8
1,645,862	-		GFF1619	0.16	-0.2
1,645,862	-		GFF1619	0.16	+0.1
1,645,862	-		GFF1619	0.16	-1.4
1,645,867	-		GFF1619	0.16	-1.2
1,645,874	+		GFF1619	0.17	-1.0
1,645,877	-		GFF1619	0.17	-2.1
1,645,877	-		GFF1619	0.17	-1.9
1,645,879	+		GFF1619	0.17	+1.5
1,645,885	-		GFF1619	0.18	+0.8
1,645,889	-		GFF1619	0.18	-0.3
1,645,902	-		GFF1619	0.19	-0.6
1,645,917	-		GFF1619	0.20	-0.4
1,645,918	+		GFF1619	0.20	-1.4
1,645,951	-		GFF1619	0.23	-0.5
1,645,954	+		GFF1619	0.23	-0.6
1,645,965	+		GFF1619	0.24	-1.1
1,646,001	+		GFF1619	0.27	-2.3
1,646,013	-		GFF1619	0.28	-0.4
1,646,042	+		GFF1619	0.30	+0.1
1,646,045	-		GFF1619	0.30	-1.4
1,646,087	-		GFF1619	0.34	-1.8
1,646,093	-		GFF1619	0.34	-1.0
1,646,117	+		GFF1619	0.36	-0.2
1,646,128	+		GFF1619	0.37	-0.7
1,646,128	+		GFF1619	0.37	-0.4
1,646,131	+		GFF1619	0.37	+0.2
1,646,133	+		GFF1619	0.37	-1.5
1,646,136	-		GFF1619	0.37	-1.0
1,646,136	-		GFF1619	0.37	-0.4
1,646,136	-		GFF1619	0.37	-0.5
1,646,138	+		GFF1619	0.38	-0.4
1,646,139	-		GFF1619	0.38	+0.6
1,646,141	-		GFF1619	0.38	-1.1
1,646,141	-		GFF1619	0.38	-1.4
1,646,146	-		GFF1619	0.38	-1.7
1,646,187	+		GFF1619	0.41	-0.2
1,646,190	-		GFF1619	0.42	-0.5
1,646,197	-		GFF1619	0.42	-0.3
1,646,199	+		GFF1619	0.42	+0.8
1,646,207	-		GFF1619	0.43	-1.0
1,646,207	-		GFF1619	0.43	+0.7
1,646,271	+		GFF1619	0.48	-0.1
1,646,277	+		GFF1619	0.48	-0.9
1,646,277	+		GFF1619	0.48	+0.6
1,646,286	-		GFF1619	0.49	-1.0
1,646,308	+		GFF1619	0.51	-0.1
1,646,316	-		GFF1619	0.51	+0.5
1,646,326	-		GFF1619	0.52	-0.2
1,646,334	+		GFF1619	0.53	-0.7
1,646,351	+		GFF1619	0.54	-0.9
1,646,387	-		GFF1619	0.57	+0.4
1,646,393	-		GFF1619	0.58	-0.6
1,646,427	+		GFF1619	0.60	-1.6
1,646,427	+		GFF1619	0.60	-0.1
1,646,435	-		GFF1619	0.61	-0.6
1,646,435	-		GFF1619	0.61	+0.2
1,646,435	-		GFF1619	0.61	+0.9
1,646,435	-		GFF1619	0.61	-0.4
1,646,435	-		GFF1619	0.61	-2.0
1,646,435	-		GFF1619	0.61	-0.1
1,646,467	+		GFF1619	0.63	-0.9
1,646,473	-		GFF1619	0.64	-1.2
1,646,475	-		GFF1619	0.64	+0.7
1,646,518	+		GFF1619	0.67	-1.7
1,646,527	+		GFF1619	0.68	-0.7
1,646,535	-		GFF1619	0.69	-0.7
1,646,545	+		GFF1619	0.69	+0.3
1,646,547	+		GFF1619	0.70	-1.4
1,646,547	+		GFF1619	0.70	-0.7
1,646,547	+		GFF1619	0.70	+0.4
1,646,547	+		GFF1619	0.70	+1.0
1,646,547	+		GFF1619	0.70	+1.6
1,646,547	+		GFF1619	0.70	-0.9
1,646,547	+		GFF1619	0.70	-0.5
1,646,555	-		GFF1619	0.70	-0.8
1,646,555	-		GFF1619	0.70	-0.8
1,646,555	-		GFF1619	0.70	+0.1
1,646,555	-		GFF1619	0.70	-1.0
1,646,555	-		GFF1619	0.70	-1.4
1,646,599	+		GFF1619	0.74	-0.0
1,646,599	+		GFF1619	0.74	-0.1
1,646,600	-		GFF1619	0.74	+1.0
1,646,605	+		GFF1619	0.74	+1.4
1,646,618	-		GFF1619	0.75	-1.4
1,646,619	+		GFF1619	0.75	-2.2
1,646,643	+		GFF1619	0.77	-0.2
1,646,650	+		GFF1619	0.78	-0.9
1,646,651	-		GFF1619	0.78	-0.8
1,646,651	-		GFF1619	0.78	-0.1
1,646,678	+		GFF1619	0.80	+0.0
1,646,686	-		GFF1619	0.80	-0.7
1,646,730	+		GFF1619	0.84	-1.5
1,646,799	-		GFF1619	0.89	-0.3
1,646,805	+		GFF1619	0.90	+0.2
1,646,813	-				-0.0
1,646,813	-				-0.7
1,646,885	-				-0.4
1,646,885	-				+0.6
1,646,885	-				-0.7
1,646,899	+				-0.9
1,646,907	-				-0.3
1,646,930	+				+0.3
1,646,935	+				-0.1
1,646,940	+				+1.9
1,646,941	+				-1.5
1,646,943	+				+0.9
1,646,943	-				+0.2
1,646,948	-				-0.8
1,646,959	-				+0.1
1,646,959	-				-2.2
1,646,966	-				-0.5
1,646,978	-				+1.6
1,646,993	+				-0.5
1,647,011	-				+0.1
1,647,012	-				-0.1
1,647,014	+				+0.5
1,647,022	-				-1.0
1,647,040	+				-0.7
1,647,048	-				-1.4
1,647,048	-				-0.4
1,647,069	+				-0.7
1,647,099	+				-0.7
1,647,099	+				+0.3
1,647,099	+				-0.4
1,647,099	+				+1.7
1,647,099	+				+0.8
1,647,099	+				+0.5
1,647,099	+				-1.0
1,647,099	+				-2.0
1,647,099	+				+0.6
1,647,099	+				-2.6
1,647,099	+				-0.5
1,647,099	+				+1.2
1,647,099	+				-0.8
1,647,099	+				-0.1
1,647,099	+				-0.4
1,647,099	+				-1.8
1,647,099	+				-1.0
1,647,099	+				-1.4
1,647,099	+				+0.3
1,647,099	+				-0.7
1,647,099	+				-0.6
1,647,099	+				-2.1
1,647,099	+				-1.4
1,647,099	+				-0.2
1,647,099	+				+0.6
1,647,099	+				+0.0
1,647,099	+				-1.2
1,647,099	+				-1.0
1,647,099	+				-0.5
1,647,099	+				-0.9
1,647,104	+				-0.4
1,647,107	-				-1.1
1,647,107	-				-0.1
1,647,107	-				-2.0
1,647,107	-				-0.2
1,647,107	-				-1.5
1,647,107	-				+0.2
1,647,107	-				+1.5
1,647,107	-				-0.5
1,647,107	-				-0.0
1,647,107	-				+0.0
1,647,107	-				+0.8
1,647,107	-				+1.0
1,647,107	-				-0.6
1,647,107	-				+0.0
1,647,107	-				-1.8
1,647,107	-				-0.2
1,647,107	-				-0.6
1,647,107	-				+1.0
1,647,107	-				-0.8
1,647,107	-				-2.3
1,647,107	-				-0.5
1,647,107	-				-0.9
1,647,107	-				+0.8
1,647,107	-				-1.9
1,647,107	-				+0.2
1,647,107	-				-0.6
1,647,109	+				-1.2
1,647,112	-				-1.5
1,647,145	+				-0.5
1,647,151	+				-0.7
1,647,153	-				-0.8
1,647,153	-				-1.6
1,647,153	-				+0.9
1,647,162	+				-1.7
1,647,162	+				-2.2
1,647,162	+				-1.7
1,647,170	-		GFF1620	0.10	-0.3
1,647,172	+		GFF1620	0.10	-0.5
1,647,172	+		GFF1620	0.10	-0.7
1,647,175	-		GFF1620	0.10	+0.4
1,647,233	+		GFF1620	0.15	-0.7
1,647,241	-		GFF1620	0.16	+0.0
1,647,247	+		GFF1620	0.16	+0.8
1,647,252	+		GFF1620	0.17	-0.2
1,647,255	-		GFF1620	0.17	-0.7
1,647,255	-		GFF1620	0.17	-0.8
1,647,260	-		GFF1620	0.17	-1.0
1,647,264	-		GFF1620	0.17	+0.6
1,647,291	-		GFF1620	0.20	+1.5
1,647,322	-		GFF1620	0.22	-0.8
1,647,394	-		GFF1620	0.28	+0.4
1,647,401	-		GFF1620	0.28	+0.8
1,647,403	+		GFF1620	0.28	-2.1
1,647,403	+		GFF1620	0.28	-1.5
1,647,403	+		GFF1620	0.28	+0.8
1,647,411	-		GFF1620	0.29	+0.5
1,647,411	-		GFF1620	0.29	-0.2
1,647,411	-		GFF1620	0.29	-1.5
1,647,466	+		GFF1620	0.33	-0.6
1,647,474	-		GFF1620	0.34	-2.2
1,647,484	-		GFF1620	0.35	+0.0
1,647,493	+		GFF1620	0.35	-0.5
1,647,498	+		GFF1620	0.36	-0.7
1,647,499	+		GFF1620	0.36	+0.3
1,647,499	+		GFF1620	0.36	-0.5
1,647,499	+		GFF1620	0.36	-1.4
1,647,506	-		GFF1620	0.36	+0.1
1,647,506	-		GFF1620	0.36	+0.5
1,647,507	+		GFF1620	0.37	-0.2
1,647,566	-		GFF1620	0.41	-0.9
1,647,575	+		GFF1620	0.42	+0.3
1,647,575	+		GFF1620	0.42	-0.6
1,647,579	-		GFF1620	0.42	+0.5
1,647,580	+		GFF1620	0.42	+0.3
1,647,583	-		GFF1620	0.43	+0.6
1,647,584	+		GFF1620	0.43	-1.6
1,647,588	-		GFF1620	0.43	-0.7
1,647,599	+		GFF1620	0.44	-0.0
1,647,607	-		GFF1620	0.44	+0.8
1,647,622	-		GFF1620	0.46	-0.8
1,647,679	-		GFF1620	0.50	-0.9
1,647,686	-		GFF1620	0.51	+0.4
1,647,706	+		GFF1620	0.52	-0.1
1,647,706	+		GFF1620	0.52	-0.8
1,647,711	+		GFF1620	0.53	-0.8
1,647,711	+		GFF1620	0.53	-0.1
1,647,719	-		GFF1620	0.53	-1.6
1,647,719	-		GFF1620	0.53	-1.0
1,647,726	-		GFF1620	0.54	+0.3
1,647,747	+		GFF1620	0.55	-1.9
1,647,755	-		GFF1620	0.56	-1.0
1,647,765	+		GFF1620	0.57	-0.2
1,647,770	+		GFF1620	0.57	-0.8
1,647,770	+		GFF1620	0.57	-1.0
1,647,778	-		GFF1620	0.58	+0.1
1,647,778	-		GFF1620	0.58	+0.4
1,647,778	-		GFF1620	0.58	-0.2
1,647,800	-		GFF1620	0.60	-1.0
1,647,808	+		GFF1620	0.60	-0.7
1,647,808	+		GFF1620	0.60	-0.5
1,647,808	+		GFF1620	0.60	+0.5
1,647,816	-		GFF1620	0.61	-0.1
1,647,823	+		GFF1620	0.61	+0.2
1,647,831	-		GFF1620	0.62	-1.1
1,647,831	-		GFF1620	0.62	-1.8
1,647,840	+		GFF1620	0.63	+0.2
1,647,844	+		GFF1620	0.63	-0.6
1,647,849	+		GFF1620	0.63	-0.7
1,647,852	-		GFF1620	0.64	-1.1
1,647,852	-		GFF1620	0.64	+0.4
1,647,852	-		GFF1620	0.64	+1.4
1,647,854	+		GFF1620	0.64	+1.2
1,647,857	-		GFF1620	0.64	-1.4
1,647,857	-		GFF1620	0.64	-1.1
1,647,907	+		GFF1620	0.68	-0.9