Strain Fitness in Sphingobium sp. HT1-2 around GFF1592

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,617,795	+		GFF1590	0.84	+0.3
1,617,803	-		GFF1590	0.84	+0.9
1,617,813	-		GFF1590	0.85	-0.7
1,617,822	+		GFF1590	0.86	-0.5
1,617,823	-		GFF1590	0.86	-1.2
1,617,837	-		GFF1590	0.87	-0.7
1,617,849	-		GFF1590	0.87	-1.7
1,617,868	+		GFF1590	0.89	-0.4
1,617,868	+		GFF1590	0.89	-1.7
1,617,876	-		GFF1590	0.89	-0.6
1,617,876	-		GFF1590	0.89	-0.5
1,617,881	-		GFF1590	0.90	-0.4
1,617,898	-				-0.7
1,617,908	+				-1.7
1,617,908	+				-0.0
1,617,916	-				-1.9
1,617,916	-				-2.0
1,617,916	-				-0.9
1,617,916	-				-1.1
1,617,916	-				-1.3
1,617,916	-				-0.8
1,617,940	+				+0.5
1,617,949	-				-0.9
1,618,018	+				-0.2
1,618,018	+				-1.8
1,618,018	+				+0.2
1,618,026	-				+0.3
1,618,026	-				+0.1
1,618,026	-				-1.2
1,618,026	-				-0.7
1,618,027	-				+1.3
1,618,044	-				-0.7
1,618,044	-				-0.2
1,618,059	+				-0.6
1,618,073	+				-0.7
1,618,073	+				-0.0
1,618,073	+				-0.0
1,618,081	-				-0.5
1,618,081	-				+0.6
1,618,150	-				-1.7
1,618,156	+				-1.0
1,618,156	+				+0.3
1,618,159	-				-1.1
1,618,164	-				-1.0
1,618,164	-				-0.1
1,618,164	-				-1.4
1,618,250	+				-1.6
1,618,252	-				+0.8
1,618,296	+		GFF1591	0.17	-0.6
1,618,304	+		GFF1591	0.18	-1.2
1,618,305	-		GFF1591	0.19	+0.2
1,618,307	-		GFF1591	0.19	-0.5
1,618,311	+		GFF1591	0.20	-0.2
1,618,311	+		GFF1591	0.20	-0.1
1,618,316	+		GFF1591	0.21	-1.0
1,618,316	+		GFF1591	0.21	-1.5
1,618,316	+		GFF1591	0.21	-0.4
1,618,321	+		GFF1591	0.23	-1.0
1,618,321	+		GFF1591	0.23	-0.2
1,618,324	-		GFF1591	0.23	-0.1
1,618,324	-		GFF1591	0.23	-1.2
1,618,330	-		GFF1591	0.25	-0.6
1,618,332	+		GFF1591	0.25	-0.7
1,618,339	+		GFF1591	0.27	-1.7
1,618,344	+		GFF1591	0.28	-0.2
1,618,344	+		GFF1591	0.28	-0.6
1,618,344	+		GFF1591	0.28	-1.0
1,618,352	-		GFF1591	0.30	-0.1
1,618,352	-		GFF1591	0.30	-1.4
1,618,377	+		GFF1591	0.36	+1.4
1,618,385	-		GFF1591	0.38	-0.0
1,618,402	-		GFF1591	0.42	+0.2
1,618,421	-		GFF1591	0.47	+0.4
1,618,431	-		GFF1591	0.49	-1.0
1,618,446	+		GFF1591	0.53	+0.3
1,618,446	+		GFF1591	0.53	-1.2
1,618,454	-		GFF1591	0.55	-1.2
1,618,454	-		GFF1591	0.55	-1.3
1,618,454	-		GFF1591	0.55	+0.1
1,618,454	-		GFF1591	0.55	-1.5
1,618,506	+		GFF1591	0.68	-1.2
1,618,510	-		GFF1591	0.69	-1.5
1,618,514	-		GFF1591	0.70	-0.6
1,618,528	+		GFF1591	0.73	-1.0
1,618,528	+		GFF1591	0.73	-0.4
1,618,528	+		GFF1591	0.73	-0.1
1,618,536	-		GFF1591	0.75	+1.5
1,618,536	-		GFF1591	0.75	+0.5
1,618,543	+		GFF1591	0.77	-1.2
1,618,543	+		GFF1591	0.77	+1.2
1,618,543	+		GFF1591	0.77	+0.6
1,618,551	-		GFF1591	0.79	+0.6
1,618,551	-		GFF1591	0.79	-0.1
1,618,557	+		GFF1591	0.80	+0.5
1,618,557	+		GFF1591	0.80	-2.0
1,618,557	+		GFF1591	0.80	-0.8
1,618,565	-		GFF1591	0.82	-1.0
1,618,567	+		GFF1591	0.82	+0.8
1,618,582	+		GFF1591	0.86	-0.7
1,618,587	-		GFF1591	0.87	+0.6
1,618,592	-		GFF1591	0.89	+1.1
1,618,613	+				-1.2
1,618,618	+				-0.9
1,618,626	-				-1.4
1,618,632	+				-1.1
1,618,637	+				-0.0
1,618,642	+				+0.3
1,618,645	+				+1.9
1,618,645	+				-1.6
1,618,645	+				+0.1
1,618,652	+				+0.3
1,618,653	-				-0.8
1,618,657	-				-2.1
1,618,701	+				+0.8
1,618,709	-				-1.8
1,618,709	-				-0.1
1,618,710	-				+1.2
1,618,734	+				-0.2
1,618,772	+				-0.3
1,618,785	-				-0.4
1,618,788	+				-1.1
1,618,792	-				-0.9
1,618,851	-				-0.6
1,618,866	+				-0.1
1,618,869	-				-0.6
1,618,874	-				-0.7
1,618,946	-		GFF1592	0.11	-0.6
1,618,978	-		GFF1592	0.13	-0.5
1,619,091	-		GFF1592	0.21	-1.1
1,619,157	-		GFF1592	0.25	-1.0
1,619,168	+		GFF1592	0.26	-0.6
1,619,171	-		GFF1592	0.26	-0.7
1,619,183	+		GFF1592	0.27	-0.5
1,619,242	-		GFF1592	0.31	-1.5
1,619,242	-		GFF1592	0.31	-0.4
1,619,242	-		GFF1592	0.31	-0.4
1,619,265	+		GFF1592	0.33	-0.2
1,619,270	+		GFF1592	0.33	-0.5
1,619,283	-		GFF1592	0.34	-0.6
1,619,315	-		GFF1592	0.36	-0.1
1,619,383	-		GFF1592	0.41	-1.5
1,619,405	+		GFF1592	0.42	-1.0
1,619,405	+		GFF1592	0.42	-0.2
1,619,405	+		GFF1592	0.42	-0.6
1,619,413	-		GFF1592	0.43	-1.1
1,619,413	-		GFF1592	0.43	-0.4
1,619,441	-		GFF1592	0.45	-0.7
1,619,443	-		GFF1592	0.45	-0.5
1,619,491	+		GFF1592	0.48	-0.2
1,619,501	+		GFF1592	0.49	-0.5
1,619,518	-		GFF1592	0.50	-1.7
1,619,572	+		GFF1592	0.54	-0.9
1,619,572	+		GFF1592	0.54	-1.0
1,619,572	+		GFF1592	0.54	-0.2
1,619,572	+		GFF1592	0.54	-0.2
1,619,572	+		GFF1592	0.54	-0.2
1,619,572	+		GFF1592	0.54	-0.9
1,619,580	-		GFF1592	0.54	-0.4
1,619,580	-		GFF1592	0.54	-0.7
1,619,580	-		GFF1592	0.54	-1.7
1,619,580	-		GFF1592	0.54	-0.4
1,619,580	-		GFF1592	0.54	-0.7
1,619,580	-		GFF1592	0.54	-1.1
1,619,596	+		GFF1592	0.55	-0.7
1,619,777	-		GFF1592	0.68	-1.1
1,619,865	+		GFF1592	0.74	-1.1
1,619,879	-		GFF1592	0.75	-0.9
1,619,879	-		GFF1592	0.75	-0.4
1,619,902	-		GFF1592	0.76	-0.7
1,619,926	-		GFF1592	0.78	-1.0
1,619,962	-		GFF1592	0.80	-0.5
1,619,962	-		GFF1592	0.80	-1.0
1,620,054	+		GFF1592	0.87	-0.4
1,620,054	+		GFF1592	0.87	-0.4
1,620,062	-		GFF1592	0.87	-1.0
1,620,079	+		GFF1592	0.88	-0.4
1,620,144	+				-1.0
1,620,158	+				-0.1
1,620,252	-				-1.0
1,620,273	-				-0.2
1,620,294	-				-1.0
1,620,296	-				-1.5
1,620,319	+				-1.6
1,620,366	+				-0.1
1,620,394	+				-0.6
1,620,516	-		GFF1593	0.15	-0.8
1,620,516	-		GFF1593	0.15	-0.6
1,620,516	-		GFF1593	0.15	-0.4
1,620,516	-		GFF1593	0.15	-0.2
1,620,516	-		GFF1593	0.15	-1.2
1,620,589	+		GFF1593	0.19	-0.5
1,620,648	-		GFF1593	0.22	-1.5
1,620,678	-		GFF1593	0.24	-0.1
1,620,678	-		GFF1593	0.24	-0.7
1,620,684	-		GFF1593	0.24	-0.1
1,620,776	-		GFF1593	0.29	-0.5
1,620,848	-		GFF1593	0.33	-0.6
1,620,859	+		GFF1593	0.34	-0.7
1,620,960	+		GFF1593	0.39	-1.2
1,620,968	-		GFF1593	0.40	-0.7
1,620,968	-		GFF1593	0.40	-0.7
1,621,005	-		GFF1593	0.42	-0.7
1,621,005	-		GFF1593	0.42	-0.8
1,621,054	+		GFF1593	0.44	-0.2
1,621,098	-		GFF1593	0.47	-0.1