Strain Fitness in Sphingobium sp. HT1-2 around GFF1590

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,615,619	-		GFF1587	0.52	-1.4
1,615,627	+		GFF1587	0.54	-0.3
1,615,634	-		GFF1587	0.56	-1.7
1,615,635	-		GFF1587	0.56	-0.3
1,615,635	-		GFF1587	0.56	-0.7
1,615,635	-		GFF1587	0.56	+0.4
1,615,665	-		GFF1587	0.64	-0.7
1,615,711	-		GFF1587	0.76	-1.2
1,615,738	-		GFF1587	0.84	-0.9
1,615,765	+				-1.1
1,615,765	+				-0.7
1,615,770	+				-0.5
1,615,770	+				+1.2
1,615,773	-				-1.2
1,615,773	-				-0.5
1,615,778	-				+0.4
1,615,803	+				-0.1
1,615,816	-		GFF1588	0.10	-0.1
1,615,836	-		GFF1588	0.17	-1.0
1,615,836	-		GFF1588	0.17	-1.1
1,615,840	+		GFF1588	0.18	-1.7
1,615,850	-		GFF1588	0.21	+0.9
1,615,852	+		GFF1588	0.22	-0.4
1,615,860	-		GFF1588	0.25	-0.5
1,615,860	-		GFF1588	0.25	-1.0
1,615,860	-		GFF1588	0.25	+0.7
1,615,939	-		GFF1588	0.50	-1.9
1,615,952	-		GFF1588	0.54	-0.7
1,615,954	-		GFF1588	0.55	-0.1
1,615,954	-		GFF1588	0.55	-0.9
1,615,995	-		GFF1588	0.68	+0.7
1,616,005	+		GFF1588	0.72	+0.2
1,616,026	-		GFF1588	0.78	-0.2
1,616,026	-		GFF1588	0.78	-0.4
1,616,042	-		GFF1588	0.83	-1.3
1,616,065	-				-0.4
1,616,065	-				-1.5
1,616,065	-				-0.6
1,616,074	-				+1.6
1,616,081	-				-1.0
1,616,081	-				-1.7
1,616,139	-				-0.5
1,616,152	-				+0.7
1,616,162	+				-0.6
1,616,174	-				-1.0
1,616,212	-				+0.7
1,616,229	+				-1.2
1,616,238	+				-0.2
1,616,238	+				-1.4
1,616,281	+		GFF1589	0.21	-0.2
1,616,318	-		GFF1589	0.32	-0.4
1,616,325	-		GFF1589	0.34	-0.7
1,616,325	-		GFF1589	0.34	-0.9
1,616,336	-		GFF1589	0.37	-1.8
1,616,346	-		GFF1589	0.40	+1.0
1,616,372	-		GFF1589	0.48	-1.7
1,616,407	+		GFF1589	0.58	-0.7
1,616,443	+		GFF1589	0.69	+0.9
1,616,443	+		GFF1589	0.69	-0.7
1,616,443	+		GFF1589	0.69	-0.2
1,616,443	+		GFF1589	0.69	-1.6
1,616,443	+		GFF1589	0.69	-0.7
1,616,451	-		GFF1589	0.71	+0.9
1,616,475	+		GFF1589	0.78	-0.6
1,616,502	+		GFF1589	0.86	-1.0
1,616,536	+				+0.3
1,616,541	+				-0.6
1,616,541	+				+0.0
1,616,546	+				-1.4
1,616,549	-				-1.4
1,616,586	+				+0.8
1,616,586	+				+0.5
1,616,586	+				-0.2
1,616,592	+				+0.5
1,616,592	+				+0.0
1,616,592	+				-1.7
1,616,592	+				-0.6
1,616,594	-				-0.4
1,616,600	-				-1.5
1,616,600	-				-1.2
1,616,600	-				+0.0
1,616,600	-				+1.8
1,616,609	+				+1.9
1,616,609	+				+2.2
1,616,609	+				-1.1
1,616,609	+				-0.0
1,616,609	+				+0.6
1,616,609	+				-0.8
1,616,609	+				-1.1
1,616,609	+				-0.5
1,616,609	+				+0.1
1,616,609	+				-2.0
1,616,617	-				+0.1
1,616,617	-				+2.2
1,616,617	-				+0.3
1,616,617	-				-0.8
1,616,617	-				-0.4
1,616,617	-				-1.3
1,616,617	-				-1.7
1,616,617	-				+0.7
1,616,619	+				-0.6
1,616,656	-				-0.1
1,616,673	-				-0.5
1,616,679	-				-0.4
1,616,687	-				-0.6
1,616,708	+				-0.8
1,616,708	+				-0.7
1,616,708	+				-0.3
1,616,708	+				+0.3
1,616,716	-				-1.9
1,616,716	-				+0.9
1,616,716	-				+0.9
1,616,716	-				+0.2
1,616,723	-				+0.0
1,616,733	+		GFF1590	0.10	+0.2
1,616,733	+		GFF1590	0.10	-1.1
1,616,733	+		GFF1590	0.10	+0.6
1,616,733	+		GFF1590	0.10	+0.6
1,616,741	-		GFF1590	0.11	-0.4
1,616,764	-		GFF1590	0.12	-0.3
1,616,808	+		GFF1590	0.16	-0.2
1,616,810	+		GFF1590	0.16	+0.7
1,616,853	-		GFF1590	0.19	-0.4
1,616,859	+		GFF1590	0.19	-1.0
1,616,859	+		GFF1590	0.19	+0.3
1,616,859	+		GFF1590	0.19	+0.9
1,616,859	+		GFF1590	0.19	-0.7
1,616,859	+		GFF1590	0.19	-0.6
1,616,859	+		GFF1590	0.19	-0.5
1,616,859	+		GFF1590	0.19	-0.5
1,616,859	+		GFF1590	0.19	-1.0
1,616,859	+		GFF1590	0.19	+0.5
1,616,859	+		GFF1590	0.19	-1.3
1,616,859	+		GFF1590	0.19	-0.1
1,616,859	+		GFF1590	0.19	-0.2
1,616,859	+		GFF1590	0.19	-1.8
1,616,859	+		GFF1590	0.19	+0.2
1,616,859	+		GFF1590	0.19	-1.7
1,616,859	+		GFF1590	0.19	-0.2
1,616,859	+		GFF1590	0.19	-1.0
1,616,859	+		GFF1590	0.19	+1.6
1,616,859	+		GFF1590	0.19	+0.4
1,616,859	+		GFF1590	0.19	+1.0
1,616,859	+		GFF1590	0.19	-1.0
1,616,859	+		GFF1590	0.19	+0.1
1,616,859	+		GFF1590	0.19	-0.9
1,616,862	-		GFF1590	0.19	+0.7
1,616,867	-		GFF1590	0.20	-0.2
1,616,867	-		GFF1590	0.20	-0.7
1,616,867	-		GFF1590	0.20	-1.4
1,616,867	-		GFF1590	0.20	+0.1
1,616,867	-		GFF1590	0.20	-0.6
1,616,867	-		GFF1590	0.20	+0.9
1,616,867	-		GFF1590	0.20	-0.6
1,616,867	-		GFF1590	0.20	-0.5
1,616,867	-		GFF1590	0.20	+0.9
1,616,867	-		GFF1590	0.20	+0.7
1,616,867	-		GFF1590	0.20	+0.3
1,616,867	-		GFF1590	0.20	-0.4
1,616,867	-		GFF1590	0.20	+0.4
1,616,867	-		GFF1590	0.20	-1.0
1,616,867	-		GFF1590	0.20	-1.2
1,616,867	-		GFF1590	0.20	+0.3
1,616,867	-		GFF1590	0.20	-0.4
1,616,867	-		GFF1590	0.20	-0.1
1,616,867	-		GFF1590	0.20	-0.7
1,616,867	-		GFF1590	0.20	-0.4
1,616,867	-		GFF1590	0.20	-0.6
1,616,867	-		GFF1590	0.20	-0.5
1,616,867	-		GFF1590	0.20	-0.4
1,616,867	-		GFF1590	0.20	-1.9
1,616,867	-		GFF1590	0.20	+1.0
1,616,867	-		GFF1590	0.20	-0.0
1,616,867	-		GFF1590	0.20	+1.3
1,616,867	-		GFF1590	0.20	-0.8
1,616,867	-		GFF1590	0.20	-0.5
1,616,894	-		GFF1590	0.21	+0.2
1,616,902	-		GFF1590	0.22	-1.7
1,616,903	-		GFF1590	0.22	-0.2
1,616,914	+		GFF1590	0.23	-0.2
1,616,922	+		GFF1590	0.23	+0.4
1,616,922	-		GFF1590	0.23	-2.0
1,616,932	+		GFF1590	0.24	+0.3
1,616,938	+		GFF1590	0.24	+1.3
1,616,944	-		GFF1590	0.25	-1.8
1,616,946	-		GFF1590	0.25	+0.8
1,616,950	+		GFF1590	0.25	+0.2
1,616,955	+		GFF1590	0.26	+0.3
1,616,958	-		GFF1590	0.26	+0.3
1,616,959	+		GFF1590	0.26	-0.6
1,616,967	-		GFF1590	0.27	+0.4
1,616,982	-		GFF1590	0.28	-1.0
1,616,990	-		GFF1590	0.28	-1.5
1,617,033	+		GFF1590	0.31	-0.9
1,617,072	-		GFF1590	0.34	-0.5
1,617,099	-		GFF1590	0.36	+0.3
1,617,099	-		GFF1590	0.36	-0.1
1,617,132	+		GFF1590	0.38	-1.3
1,617,132	+		GFF1590	0.38	-1.7
1,617,140	-		GFF1590	0.38	+0.7
1,617,145	+		GFF1590	0.39	-0.1
1,617,173	-		GFF1590	0.41	-0.6
1,617,173	-		GFF1590	0.41	+0.0
1,617,174	+		GFF1590	0.41	-0.4
1,617,174	+		GFF1590	0.41	-1.1
1,617,182	-		GFF1590	0.41	+0.3
1,617,182	-		GFF1590	0.41	-0.4
1,617,183	-		GFF1590	0.41	-0.7
1,617,190	+		GFF1590	0.42	-0.9
1,617,190	+		GFF1590	0.42	-0.8
1,617,190	+		GFF1590	0.42	+0.3
1,617,202	-		GFF1590	0.43	-1.0
1,617,211	+		GFF1590	0.43	-1.7
1,617,221	+		GFF1590	0.44	-0.6
1,617,221	+		GFF1590	0.44	+0.5
1,617,221	+		GFF1590	0.44	-0.9
1,617,221	+		GFF1590	0.44	-0.9
1,617,229	-		GFF1590	0.45	-0.1
1,617,229	-		GFF1590	0.45	-1.9
1,617,237	+		GFF1590	0.45	-1.3
1,617,238	+		GFF1590	0.45	+1.0
1,617,238	+		GFF1590	0.45	-0.2
1,617,246	-		GFF1590	0.46	-0.7
1,617,296	+		GFF1590	0.49	-1.4
1,617,296	+		GFF1590	0.49	-1.6
1,617,296	+		GFF1590	0.49	-0.2
1,617,296	+		GFF1590	0.49	+0.1
1,617,296	+		GFF1590	0.49	-1.4
1,617,296	+		GFF1590	0.49	-1.3
1,617,296	+		GFF1590	0.49	+0.5
1,617,296	+		GFF1590	0.49	-1.0
1,617,296	+		GFF1590	0.49	-0.2
1,617,304	-		GFF1590	0.50	-2.0
1,617,304	-		GFF1590	0.50	-0.5
1,617,304	-		GFF1590	0.50	-0.4
1,617,304	-		GFF1590	0.50	+1.0
1,617,304	-		GFF1590	0.50	+0.3
1,617,304	-		GFF1590	0.50	-1.4
1,617,304	-		GFF1590	0.50	-0.8
1,617,304	-		GFF1590	0.50	-2.6
1,617,304	-		GFF1590	0.50	-0.5
1,617,311	+		GFF1590	0.50	-0.2
1,617,311	+		GFF1590	0.50	+1.0
1,617,319	-		GFF1590	0.51	-0.7
1,617,319	-		GFF1590	0.51	-1.4
1,617,383	+		GFF1590	0.55	-1.4
1,617,383	+		GFF1590	0.55	-0.9
1,617,388	+		GFF1590	0.56	-2.3
1,617,391	-		GFF1590	0.56	-1.7
1,617,412	-		GFF1590	0.57	-1.4
1,617,436	+		GFF1590	0.59	-0.5
1,617,454	-		GFF1590	0.60	-0.0
1,617,455	+		GFF1590	0.60	-0.1
1,617,463	-		GFF1590	0.61	-1.0
1,617,463	-		GFF1590	0.61	-2.9
1,617,463	-		GFF1590	0.61	-1.3
1,617,463	-		GFF1590	0.61	-0.3
1,617,463	-		GFF1590	0.61	-0.2
1,617,463	-		GFF1590	0.61	+0.8
1,617,465	+		GFF1590	0.61	+0.7
1,617,465	+		GFF1590	0.61	+1.9
1,617,465	+		GFF1590	0.61	-0.5
1,617,465	+		GFF1590	0.61	-2.0
1,617,473	-		GFF1590	0.61	+1.1
1,617,473	-		GFF1590	0.61	-1.0
1,617,473	-		GFF1590	0.61	+1.5
1,617,504	-		GFF1590	0.64	+0.3
1,617,504	-		GFF1590	0.64	-0.0
1,617,509	-		GFF1590	0.64	-1.2
1,617,520	+		GFF1590	0.65	-0.2
1,617,537	+		GFF1590	0.66	+0.1
1,617,545	-		GFF1590	0.66	-1.3
1,617,556	+		GFF1590	0.67	-1.4
1,617,566	-		GFF1590	0.68	-0.9
1,617,629	+		GFF1590	0.72	-0.9
1,617,637	-		GFF1590	0.73	-0.0
1,617,637	-		GFF1590	0.73	-0.4
1,617,649	+		GFF1590	0.74	+0.1
1,617,662	+		GFF1590	0.74	-0.4
1,617,665	-		GFF1590	0.75	-0.5
1,617,670	-		GFF1590	0.75	-0.7
1,617,670	-		GFF1590	0.75	-0.6
1,617,683	-		GFF1590	0.76	+1.7
1,617,704	-		GFF1590	0.77	-1.0
1,617,710	+		GFF1590	0.78	-1.5
1,617,725	-		GFF1590	0.79	-0.2
1,617,764	+		GFF1590	0.82	-0.7
1,617,772	-		GFF1590	0.82	-0.1
1,617,772	-		GFF1590	0.82	-0.0
1,617,772	-		GFF1590	0.82	+0.3
1,617,772	-		GFF1590	0.82	-1.0
1,617,772	-		GFF1590	0.82	+0.3
1,617,783	+		GFF1590	0.83	+0.6
1,617,783	+		GFF1590	0.83	-1.7
1,617,783	+		GFF1590	0.83	-0.5
1,617,795	+		GFF1590	0.84	+0.3
1,617,803	-		GFF1590	0.84	+0.9
1,617,813	-		GFF1590	0.85	-0.7
1,617,822	+		GFF1590	0.86	-0.5
1,617,823	-		GFF1590	0.86	-1.2
1,617,837	-		GFF1590	0.87	-0.7
1,617,849	-		GFF1590	0.87	-1.7
1,617,868	+		GFF1590	0.89	-0.4
1,617,868	+		GFF1590	0.89	-1.7
1,617,876	-		GFF1590	0.89	-0.6
1,617,876	-		GFF1590	0.89	-0.5
1,617,881	-		GFF1590	0.90	-0.4
1,617,898	-				-0.7
1,617,908	+				-1.7
1,617,908	+				-0.0
1,617,916	-				-1.9
1,617,916	-				-2.0
1,617,916	-				-0.9
1,617,916	-				-1.1
1,617,916	-				-1.3
1,617,916	-				-0.8
1,617,940	+				+0.5
1,617,949	-				-0.9
1,618,018	+				-0.2
1,618,018	+				-1.8
1,618,018	+				+0.2
1,618,026	-				+0.3
1,618,026	-				+0.1
1,618,026	-				-1.2
1,618,026	-				-0.7
1,618,027	-				+1.3
1,618,044	-				-0.7
1,618,044	-				-0.2
1,618,059	+				-0.6
1,618,073	+				-0.7
1,618,073	+				-0.0
1,618,073	+				-0.0
1,618,081	-				-0.5
1,618,081	-				+0.6
1,618,150	-				-1.7
1,618,156	+				-1.0
1,618,156	+				+0.3
1,618,159	-				-1.1
1,618,164	-				-1.0
1,618,164	-				-0.1
1,618,164	-				-1.4
1,618,250	+				-1.6
1,618,252	-				+0.8
1,618,296	+		GFF1591	0.17	-0.6
1,618,304	+		GFF1591	0.18	-1.2
1,618,305	-		GFF1591	0.19	+0.2
1,618,307	-		GFF1591	0.19	-0.5
1,618,311	+		GFF1591	0.20	-0.2
1,618,311	+		GFF1591	0.20	-0.1
1,618,316	+		GFF1591	0.21	-1.0
1,618,316	+		GFF1591	0.21	-1.5
1,618,316	+		GFF1591	0.21	-0.4
1,618,321	+		GFF1591	0.23	-1.0
1,618,321	+		GFF1591	0.23	-0.2
1,618,324	-		GFF1591	0.23	-0.1
1,618,324	-		GFF1591	0.23	-1.2
1,618,330	-		GFF1591	0.25	-0.6
1,618,332	+		GFF1591	0.25	-0.7
1,618,339	+		GFF1591	0.27	-1.7
1,618,344	+		GFF1591	0.28	-0.2
1,618,344	+		GFF1591	0.28	-0.6
1,618,344	+		GFF1591	0.28	-1.0
1,618,352	-		GFF1591	0.30	-0.1
1,618,352	-		GFF1591	0.30	-1.4
1,618,377	+		GFF1591	0.36	+1.4
1,618,385	-		GFF1591	0.38	-0.0
1,618,402	-		GFF1591	0.42	+0.2
1,618,421	-		GFF1591	0.47	+0.4
1,618,431	-		GFF1591	0.49	-1.0
1,618,446	+		GFF1591	0.53	+0.3
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