Strain Fitness in Sphingobium sp. HT1-2 around GFF1536

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,567,313	+		GFF1535	0.19	+0.5
1,567,321	+		GFF1535	0.20	-0.1
1,567,321	-		GFF1535	0.20	-0.4
1,567,323	+		GFF1535	0.20	+0.2
1,567,331	+		GFF1535	0.21	+1.8
1,567,331	+		GFF1535	0.21	+1.0
1,567,337	-		GFF1535	0.21	-1.2
1,567,410	-		GFF1535	0.28	-1.4
1,567,413	-		GFF1535	0.28	-0.2
1,567,415	+		GFF1535	0.29	+1.3
1,567,431	-		GFF1535	0.30	-0.7
1,567,438	+		GFF1535	0.31	-2.2
1,567,438	+		GFF1535	0.31	-0.3
1,567,445	+		GFF1535	0.32	-0.1
1,567,448	+		GFF1535	0.32	-1.7
1,567,458	+		GFF1535	0.33	-0.9
1,567,465	+		GFF1535	0.33	+0.0
1,567,482	+		GFF1535	0.35	-0.4
1,567,491	-		GFF1535	0.36	+0.3
1,567,493	+		GFF1535	0.36	+0.4
1,567,493	+		GFF1535	0.36	-1.1
1,567,493	+		GFF1535	0.36	-1.5
1,567,493	+		GFF1535	0.36	-0.8
1,567,501	-		GFF1535	0.37	+0.6
1,567,501	-		GFF1535	0.37	-0.9
1,567,501	-		GFF1535	0.37	-0.2
1,567,519	+		GFF1535	0.39	-0.7
1,567,519	+		GFF1535	0.39	-1.4
1,567,532	-		GFF1535	0.40	-0.4
1,567,532	-		GFF1535	0.40	-0.2
1,567,537	-		GFF1535	0.40	+0.5
1,567,566	-		GFF1535	0.43	-0.5
1,567,571	+		GFF1535	0.44	+0.3
1,567,573	+		GFF1535	0.44	+1.0
1,567,578	+		GFF1535	0.44	-0.2
1,567,579	-		GFF1535	0.44	-1.8
1,567,579	-		GFF1535	0.44	+1.2
1,567,579	-		GFF1535	0.44	+1.1
1,567,579	-		GFF1535	0.44	-0.1
1,567,581	-		GFF1535	0.45	-1.5
1,567,581	-		GFF1535	0.45	-1.0
1,567,586	-		GFF1535	0.45	-1.8
1,567,586	-		GFF1535	0.45	+1.5
1,567,586	-		GFF1535	0.45	-0.9
1,567,586	-		GFF1535	0.45	-0.4
1,567,613	+		GFF1535	0.48	-0.6
1,567,646	+		GFF1535	0.51	-1.4
1,567,647	-		GFF1535	0.51	-0.9
1,567,652	-		GFF1535	0.51	-0.1
1,567,667	+		GFF1535	0.53	-0.4
1,567,667	+		GFF1535	0.53	-1.4
1,567,693	+		GFF1535	0.55	+0.3
1,567,727	+		GFF1535	0.59	-0.7
1,567,730	-		GFF1535	0.59	+0.8
1,567,732	+		GFF1535	0.59	-0.8
1,567,747	+		GFF1535	0.60	-0.5
1,567,747	+		GFF1535	0.60	-0.5
1,567,755	-		GFF1535	0.61	-1.0
1,567,755	-		GFF1535	0.61	+1.1
1,567,755	-		GFF1535	0.61	-1.4
1,567,757	+		GFF1535	0.61	-0.6
1,567,769	-		GFF1535	0.63	+2.1
1,567,793	-		GFF1535	0.65	-0.9
1,567,798	-		GFF1535	0.65	-1.8
1,567,812	-		GFF1535	0.67	+0.1
1,567,831	+		GFF1535	0.68	-0.2
1,567,839	-		GFF1535	0.69	+0.7
1,567,839	-		GFF1535	0.69	-0.3
1,567,879	+		GFF1535	0.73	-0.3
1,567,879	+		GFF1535	0.73	+0.6
1,567,897	-		GFF1535	0.75	-1.4
1,567,897	-		GFF1535	0.75	-0.7
1,567,897	-		GFF1535	0.75	-1.3
1,567,914	-		GFF1535	0.76	-0.7
1,567,924	+		GFF1535	0.77	-1.2
1,567,924	+		GFF1535	0.77	-0.6
1,567,924	+		GFF1535	0.77	-0.1
1,567,929	+		GFF1535	0.78	-1.9
1,567,932	-		GFF1535	0.78	-0.7
1,567,937	-		GFF1535	0.79	-0.5
1,567,960	-		GFF1535	0.81	+0.8
1,567,965	+		GFF1535	0.81	-0.7
1,567,969	+		GFF1535	0.82	-0.2
1,567,970	-		GFF1535	0.82	-0.2
1,567,973	-		GFF1535	0.82	-0.6
1,567,976	+		GFF1535	0.82	+1.3
1,567,979	+		GFF1535	0.83	-0.1
1,568,006	-		GFF1535	0.85	-0.3
1,568,008	+		GFF1535	0.85	+0.8
1,568,017	-		GFF1535	0.86	-0.7
1,568,020	-		GFF1535	0.87	-0.9
1,568,036	-		GFF1535	0.88	+0.2
1,568,075	+				+1.3
1,568,087	+				-0.5
1,568,094	+				-1.5
1,568,095	-				-1.5
1,568,095	-				+0.4
1,568,096	-				-0.7
1,568,119	+				-0.1
1,568,129	-				-0.7
1,568,144	+				-0.0
1,568,152	-				-0.9
1,568,153	+				-1.1
1,568,161	-				-0.1
1,568,163	+				+0.2
1,568,166	-				-0.9
1,568,197	+				+1.3
1,568,214	+				+1.4
1,568,219	+				+0.3
1,568,219	+				-0.9
1,568,227	-				+0.2
1,568,227	-				+0.0
1,568,229	+				-1.2
1,568,229	+				-0.5
1,568,234	+				-0.1
1,568,234	+				-0.3
1,568,234	+				-0.4
1,568,242	-				-0.2
1,568,242	-				+0.7
1,568,242	-				-0.3
1,568,244	+				-0.1
1,568,282	-				+1.3
1,568,324	+				+0.6
1,568,408	-		GFF1536	0.10	-0.8
1,568,412	+		GFF1536	0.10	-1.5
1,568,435	-		GFF1536	0.13	+0.3
1,568,453	+		GFF1536	0.14	+0.2
1,568,453	+		GFF1536	0.14	-0.6
1,568,453	+		GFF1536	0.14	-0.5
1,568,453	+		GFF1536	0.14	-0.2
1,568,453	+		GFF1536	0.14	-0.6
1,568,453	+		GFF1536	0.14	-0.8
1,568,461	-		GFF1536	0.15	-1.2
1,568,461	-		GFF1536	0.15	-1.6
1,568,461	-		GFF1536	0.15	+0.2
1,568,461	-		GFF1536	0.15	-0.2
1,568,461	-		GFF1536	0.15	-0.1
1,568,461	-		GFF1536	0.15	+0.8
1,568,462	-		GFF1536	0.15	-2.2
1,568,470	-		GFF1536	0.16	-0.9
1,568,489	+		GFF1536	0.18	-1.4
1,568,489	+		GFF1536	0.18	-0.8
1,568,491	-		GFF1536	0.18	-0.8
1,568,504	-		GFF1536	0.19	-1.8
1,568,514	-		GFF1536	0.20	-0.4
1,568,528	+		GFF1536	0.22	+0.1
1,568,534	-		GFF1536	0.22	-0.7
1,568,557	-		GFF1536	0.24	+0.3
1,568,562	+		GFF1536	0.25	-0.0
1,568,576	+		GFF1536	0.26	-0.2
1,568,592	+		GFF1536	0.28	-1.0
1,568,592	+		GFF1536	0.28	-1.7
1,568,600	-		GFF1536	0.29	+1.3
1,568,618	+		GFF1536	0.30	-1.2
1,568,626	-		GFF1536	0.31	-0.1
1,568,628	+		GFF1536	0.31	-1.4
1,568,631	-		GFF1536	0.32	+0.1
1,568,636	-		GFF1536	0.32	-1.1
1,568,636	-		GFF1536	0.32	+0.5
1,568,653	+		GFF1536	0.34	+1.3
1,568,658	-		GFF1536	0.34	-0.7
1,568,669	-		GFF1536	0.35	-2.2
1,568,669	-		GFF1536	0.35	-1.2
1,568,673	+		GFF1536	0.36	-1.2
1,568,690	+		GFF1536	0.37	-0.1
1,568,698	-		GFF1536	0.38	+0.8
1,568,706	+		GFF1536	0.39	+0.1
1,568,749	+		GFF1536	0.43	+0.1
1,568,749	+		GFF1536	0.43	-0.2
1,568,749	+		GFF1536	0.43	-2.9
1,568,749	+		GFF1536	0.43	-1.1
1,568,757	-		GFF1536	0.44	-1.0
1,568,764	+		GFF1536	0.44	+1.0
1,568,779	+		GFF1536	0.46	-0.6
1,568,779	+		GFF1536	0.46	+0.3
1,568,787	-		GFF1536	0.47	+0.1
1,568,787	-		GFF1536	0.47	-1.0
1,568,787	-		GFF1536	0.47	-0.7
1,568,789	+		GFF1536	0.47	-0.7
1,568,843	+		GFF1536	0.52	+0.6
1,568,849	+		GFF1536	0.53	+0.8
1,568,849	+		GFF1536	0.53	+0.8
1,568,852	-		GFF1536	0.53	-0.7
1,568,852	-		GFF1536	0.53	-0.5
1,568,857	-		GFF1536	0.53	-1.4
1,568,879	+		GFF1536	0.55	+1.3
1,568,903	-		GFF1536	0.58	-0.2
1,568,904	-		GFF1536	0.58	+0.1
1,568,922	-		GFF1536	0.60	-1.0
1,568,951	+		GFF1536	0.62	-0.0
1,568,979	-		GFF1536	0.65	+0.5
1,569,016	+		GFF1536	0.69	-0.4
1,569,034	-		GFF1536	0.70	-0.0
1,569,071	-		GFF1536	0.74	+0.0
1,569,082	+		GFF1536	0.75	+0.8
1,569,083	+		GFF1536	0.75	-0.3
1,569,083	+		GFF1536	0.75	+1.6
1,569,091	-		GFF1536	0.76	-0.1
1,569,113	+		GFF1536	0.78	-1.4
1,569,113	+		GFF1536	0.78	+0.7
1,569,113	+		GFF1536	0.78	-1.6
1,569,119	-		GFF1536	0.79	-0.8
1,569,124	+		GFF1536	0.79	+0.3
1,569,128	+		GFF1536	0.79	+0.9
1,569,128	+		GFF1536	0.79	-0.5
1,569,128	+		GFF1536	0.79	-0.6
1,569,136	-		GFF1536	0.80	-1.4
1,569,141	+		GFF1536	0.81	+0.0
1,569,142	-		GFF1536	0.81	-1.4
1,569,147	-		GFF1536	0.81	-2.0
1,569,159	-		GFF1536	0.82	+0.9
1,569,168	-		GFF1536	0.83	+0.5
1,569,172	+		GFF1536	0.84	-1.0
1,569,172	+		GFF1536	0.84	-0.5
1,569,172	+		GFF1536	0.84	+0.8
1,569,172	+		GFF1536	0.84	-1.6
1,569,177	+		GFF1536	0.84	+0.6
1,569,180	-		GFF1536	0.84	-0.3
1,569,180	-		GFF1536	0.84	-0.1
1,569,180	-		GFF1536	0.84	-1.0
1,569,180	-		GFF1536	0.84	-0.7
1,569,185	-		GFF1536	0.85	-0.6
1,569,198	+		GFF1536	0.86	-0.3
1,569,198	+		GFF1536	0.86	+0.2
1,569,208	+		GFF1536	0.87	+2.0
1,569,224	+		GFF1536	0.89	-0.6
1,569,224	+		GFF1536	0.89	+0.1
1,569,224	+		GFF1536	0.89	-1.5
1,569,232	-		GFF1536	0.89	-1.0
1,569,240	-				+0.0
1,569,264	+				-1.4
1,569,264	+				-0.7
1,569,264	+				+2.3
1,569,264	+				+0.4
1,569,264	+				-2.1
1,569,264	+				-1.1
1,569,264	+				-0.2
1,569,264	+				-0.3
1,569,264	+				-0.9
1,569,264	+				-0.4
1,569,264	+				-0.3
1,569,264	+				+1.6
1,569,264	+				-0.5
1,569,264	+				-0.8
1,569,264	+				+1.1
1,569,264	+				+0.0
1,569,264	+				-0.2
1,569,264	+				+0.8
1,569,264	+				-1.9
1,569,264	+				-1.3
1,569,264	+				+1.5
1,569,264	+				+0.1
1,569,272	-				-1.1
1,569,272	-				+0.0
1,569,272	-				-0.1
1,569,272	-				+0.9
1,569,272	-				+0.5
1,569,272	-				+0.3
1,569,272	-				-0.4
1,569,272	-				-0.7
1,569,272	-				+1.1
1,569,272	-				-0.1
1,569,272	-				-1.7
1,569,272	-				-1.2
1,569,272	-				-0.0
1,569,272	-				-1.6
1,569,272	-				-0.5
1,569,272	-				-0.4
1,569,272	-				+1.0
1,569,272	-				+0.1
1,569,272	-				+0.5
1,569,272	-				-0.8
1,569,272	-				-0.8
1,569,272	-				-0.7
1,569,272	-				-0.6
1,569,272	-				-0.4
1,569,272	-				+0.8
1,569,272	-				-0.4
1,569,278	+				-0.7
1,569,282	-				-0.2
1,569,318	-				-1.3
1,569,322	-				-0.6
1,569,324	+				+0.5
1,569,324	+				-1.2
1,569,330	+				-0.5
1,569,332	-				-0.0
1,569,332	-				-0.1
1,569,332	-				-0.4
1,569,335	+				-0.8
1,569,335	+				-0.1
1,569,335	+				-0.7
1,569,335	+				-0.0
1,569,335	+				+0.9
1,569,335	+				+0.3
1,569,338	-				+0.8
1,569,343	-				+0.6
1,569,343	-				-1.0
1,569,343	-				-1.5
1,569,343	-				-1.0
1,569,343	-				-0.1
1,569,343	-				-1.1
1,569,343	-				-1.3
1,569,343	-				-0.1
1,569,343	-				+0.4
1,569,377	+				+0.3
1,569,385	+				-0.4
1,569,388	+				+0.5
1,569,396	-				+0.6
1,569,401	+				+1.8
1,569,404	-				-1.3
1,569,404	-				-2.4
1,569,414	+				-1.0
1,569,414	-				-1.7
1,569,422	-				-1.1
1,569,439	-				-1.1
1,569,449	+				+0.6
1,569,449	-				-1.1
1,569,467	-				-0.4
1,569,469	+				-0.1
1,569,480	-				-1.5
1,569,496	-				-1.4
1,569,563	+				-0.8
1,569,572	+				-0.0
1,569,579	+				+0.1
1,569,579	+				+0.8
1,569,597	-		GFF1537	0.11	-1.9
1,569,640	+		GFF1537	0.14	-0.5
1,569,640	+		GFF1537	0.14	-0.9
1,569,645	+		GFF1537	0.15	+1.5
1,569,645	+		GFF1537	0.15	+0.7
1,569,648	-		GFF1537	0.15	-0.7
1,569,653	-		GFF1537	0.15	-1.4
1,569,667	+		GFF1537	0.16	-0.1
1,569,675	-		GFF1537	0.17	-1.2
1,569,707	+		GFF1537	0.20	-0.6
1,569,707	+		GFF1537	0.20	-1.1
1,569,707	+		GFF1537	0.20	-0.4
1,569,707	+		GFF1537	0.20	-0.9
1,569,707	+		GFF1537	0.20	+0.3
1,569,715	-		GFF1537	0.20	-0.0
1,569,715	-		GFF1537	0.20	-1.6
1,569,715	-		GFF1537	0.20	-0.2
1,569,715	-		GFF1537	0.20	+0.9
1,569,715	-		GFF1537	0.20	-0.6
1,569,715	-		GFF1537	0.20	+0.0
1,569,715	-		GFF1537	0.20	-1.8
1,569,734	+		GFF1537	0.22	+0.6
1,569,742	-		GFF1537	0.23	-1.1
1,569,776	+		GFF1537	0.25	-1.6
1,569,776	+		GFF1537	0.25	-0.2
1,569,784	-		GFF1537	0.26	-1.6
1,569,804	-		GFF1537	0.28	+0.9
1,569,806	-		GFF1537	0.28	-1.2
1,569,836	+		GFF1537	0.30	-0.7
1,569,836	+		GFF1537	0.30	-1.2
1,569,843	+		GFF1537	0.31	+2.6
1,569,844	-		GFF1537	0.31	+1.0
1,569,864	-		GFF1537	0.33	-0.7
1,569,892	+		GFF1537	0.35	-0.7
1,569,892	+		GFF1537	0.35	-0.1
1,569,925	+		GFF1537	0.37	-1.0
1,569,938	-		GFF1537	0.39	-0.5
1,569,939	-		GFF1537	0.39	-1.3
1,569,953	+		GFF1537	0.40	-0.1
1,569,953	+		GFF1537	0.40	+1.3
1,569,953	+		GFF1537	0.40	-2.2
1,569,961	-		GFF1537	0.40	-1.6
1,569,970	+		GFF1537	0.41	-0.7
1,569,975	+		GFF1537	0.42	-0.0
1,569,978	-		GFF1537	0.42	-2.2
1,569,987	+		GFF1537	0.43	-0.0
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