Strain Fitness in Sphingobium sp. HT1-2 around GFF1529

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,558,865	+		GFF1527	0.79	-0.9
1,558,886	+		GFF1527	0.81	+0.2
1,558,886	+		GFF1527	0.81	-1.2
1,558,894	-		GFF1527	0.82	-0.4
1,558,894	-		GFF1527	0.82	+0.2
1,558,894	-		GFF1527	0.82	-2.2
1,558,901	-		GFF1527	0.83	-0.6
1,558,916	-		GFF1527	0.85	+1.2
1,558,916	-		GFF1527	0.85	-1.2
1,558,942	+		GFF1527	0.89	+1.1
1,558,945	-		GFF1527	0.89	-0.1
1,558,945	-		GFF1527	0.89	-0.3
1,558,950	-		GFF1527	0.90	-1.5
1,558,984	-				-0.2
1,559,003	+				+0.8
1,559,003	+				-1.2
1,559,013	+				-0.1
1,559,013	+				-0.6
1,559,013	+				+1.3
1,559,013	+				-0.3
1,559,013	+				+0.0
1,559,013	+				+0.2
1,559,013	+				-1.2
1,559,016	-				-0.0
1,559,020	+				-0.3
1,559,021	-				+0.4
1,559,021	-				-0.3
1,559,021	-				+0.4
1,559,021	-				-1.1
1,559,021	-				-0.7
1,559,021	-				-0.5
1,559,021	-				+1.0
1,559,021	-				-0.2
1,559,021	-				-0.8
1,559,021	-				-1.2
1,559,027	-				-0.1
1,559,034	-				+0.4
1,559,034	-				+0.2
1,559,073	+				-0.7
1,559,089	+				-0.9
1,559,089	+				+1.2
1,559,089	+				-0.6
1,559,089	+				-1.2
1,559,091	+				-1.0
1,559,094	+				-0.2
1,559,094	+				+0.3
1,559,094	+				+0.2
1,559,094	+				-1.2
1,559,102	-				-1.6
1,559,102	-				+0.7
1,559,102	-				-0.1
1,559,102	-				+0.7
1,559,102	-				-0.6
1,559,115	-				-0.1
1,559,116	+				-1.2
1,559,126	+				-0.2
1,559,126	+				-0.4
1,559,126	+				-0.0
1,559,131	+				-1.7
1,559,149	+		GFF1528	0.12	+0.1
1,559,149	-		GFF1528	0.12	+0.3
1,559,150	-		GFF1528	0.12	-1.1
1,559,157	-		GFF1528	0.13	-0.2
1,559,157	-		GFF1528	0.13	-1.5
1,559,157	-		GFF1528	0.13	+0.6
1,559,174	+		GFF1528	0.15	-1.3
1,559,177	-		GFF1528	0.16	+0.3
1,559,182	-		GFF1528	0.16	+0.1
1,559,185	-		GFF1528	0.17	-1.1
1,559,202	+		GFF1528	0.19	-1.7
1,559,202	+		GFF1528	0.19	-0.2
1,559,202	+		GFF1528	0.19	-1.2
1,559,210	+		GFF1528	0.20	+0.2
1,559,210	-		GFF1528	0.20	-0.7
1,559,210	-		GFF1528	0.20	-1.1
1,559,210	-		GFF1528	0.20	+0.7
1,559,223	+		GFF1528	0.21	-0.6
1,559,231	-		GFF1528	0.22	-0.1
1,559,239	+		GFF1528	0.23	-0.6
1,559,247	-		GFF1528	0.24	+0.3
1,559,253	+		GFF1528	0.25	-0.3
1,559,253	+		GFF1528	0.25	-1.4
1,559,253	+		GFF1528	0.25	-0.1
1,559,256	-		GFF1528	0.25	-2.0
1,559,258	+		GFF1528	0.26	+1.1
1,559,258	+		GFF1528	0.26	+0.9
1,559,258	+		GFF1528	0.26	-1.2
1,559,258	+		GFF1528	0.26	-0.1
1,559,258	+		GFF1528	0.26	-0.5
1,559,258	+		GFF1528	0.26	+0.9
1,559,258	+		GFF1528	0.26	-1.2
1,559,258	+		GFF1528	0.26	+1.0
1,559,261	-		GFF1528	0.26	-1.5
1,559,261	-		GFF1528	0.26	-1.5
1,559,261	-		GFF1528	0.26	+0.5
1,559,261	-		GFF1528	0.26	+0.4
1,559,261	-		GFF1528	0.26	-1.2
1,559,266	-		GFF1528	0.27	-0.1
1,559,266	-		GFF1528	0.27	-0.2
1,559,266	-		GFF1528	0.27	-0.8
1,559,266	-		GFF1528	0.27	-2.3
1,559,266	-		GFF1528	0.27	+0.3
1,559,266	-		GFF1528	0.27	-1.0
1,559,266	-		GFF1528	0.27	+0.2
1,559,266	-		GFF1528	0.27	+0.3
1,559,266	-		GFF1528	0.27	+1.1
1,559,266	-		GFF1528	0.27	-1.2
1,559,266	-		GFF1528	0.27	-0.2
1,559,266	-		GFF1528	0.27	-0.7
1,559,271	-		GFF1528	0.27	+0.9
1,559,276	-		GFF1528	0.28	+0.6
1,559,282	-		GFF1528	0.29	-1.2
1,559,282	-		GFF1528	0.29	+0.4
1,559,302	+		GFF1528	0.31	+0.5
1,559,307	+		GFF1528	0.32	-1.9
1,559,310	-		GFF1528	0.32	+0.9
1,559,310	-		GFF1528	0.32	-0.7
1,559,320	-		GFF1528	0.33	+1.1
1,559,320	-		GFF1528	0.33	-0.7
1,559,320	-		GFF1528	0.33	-0.4
1,559,331	-		GFF1528	0.35	-0.5
1,559,336	-		GFF1528	0.35	-0.4
1,559,341	-		GFF1528	0.36	+0.5
1,559,355	-		GFF1528	0.38	-1.2
1,559,370	+		GFF1528	0.40	-0.4
1,559,406	+		GFF1528	0.44	+2.2
1,559,406	+		GFF1528	0.44	-1.7
1,559,406	+		GFF1528	0.44	-0.5
1,559,425	+		GFF1528	0.47	-0.2
1,559,425	+		GFF1528	0.47	-0.6
1,559,425	+		GFF1528	0.47	-1.0
1,559,425	+		GFF1528	0.47	-0.2
1,559,425	+		GFF1528	0.47	+0.5
1,559,425	+		GFF1528	0.47	+0.3
1,559,433	-		GFF1528	0.48	+0.4
1,559,433	-		GFF1528	0.48	-2.1
1,559,433	-		GFF1528	0.48	-0.5
1,559,433	-		GFF1528	0.48	-0.1
1,559,433	-		GFF1528	0.48	-1.3
1,559,433	-		GFF1528	0.48	-0.4
1,559,433	-		GFF1528	0.48	-0.2
1,559,433	-		GFF1528	0.48	-0.2
1,559,446	+		GFF1528	0.49	-0.5
1,559,454	+		GFF1528	0.50	+0.0
1,559,454	+		GFF1528	0.50	-0.8
1,559,454	+		GFF1528	0.50	-0.7
1,559,462	-		GFF1528	0.51	-1.0
1,559,462	-		GFF1528	0.51	+1.8
1,559,462	-		GFF1528	0.51	-0.7
1,559,467	-		GFF1528	0.52	+2.0
1,559,467	-		GFF1528	0.52	-0.8
1,559,467	-		GFF1528	0.52	-0.5
1,559,475	-		GFF1528	0.53	-1.4
1,559,494	+		GFF1528	0.55	+0.3
1,559,494	+		GFF1528	0.55	+0.6
1,559,494	-		GFF1528	0.55	+0.6
1,559,502	-		GFF1528	0.56	-0.4
1,559,515	-		GFF1528	0.58	+0.5
1,559,515	-		GFF1528	0.58	+0.3
1,559,518	+		GFF1528	0.58	-1.2
1,559,523	+		GFF1528	0.59	-0.2
1,559,526	-		GFF1528	0.59	-0.2
1,559,526	-		GFF1528	0.59	+0.4
1,559,526	-		GFF1528	0.59	-1.2
1,559,528	+		GFF1528	0.59	-1.2
1,559,528	+		GFF1528	0.59	-0.8
1,559,531	-		GFF1528	0.60	-1.1
1,559,536	-		GFF1528	0.60	+0.5
1,559,546	-		GFF1528	0.62	-0.1
1,559,622	-		GFF1528	0.71	+0.6
1,559,651	+		GFF1528	0.75	+1.2
1,559,703	+		GFF1528	0.81	-0.9
1,559,711	-		GFF1528	0.82	-0.9
1,559,711	-		GFF1528	0.82	-0.7
1,559,711	-		GFF1528	0.82	-1.3
1,559,711	-		GFF1528	0.82	-0.8
1,559,713	+		GFF1528	0.83	+0.7
1,559,745	-		GFF1528	0.87	-0.0
1,559,747	+		GFF1528	0.87	+1.0
1,559,756	+		GFF1528	0.88	+0.0
1,559,764	-		GFF1528	0.89	-0.6
1,559,775	-				+1.0
1,559,793	+				-0.5
1,559,796	-				-0.1
1,559,803	+				-0.6
1,559,803	+				+0.1
1,559,817	-				-1.1
1,559,823	+				+0.0
1,559,846	+				-0.2
1,559,846	+				+1.6
1,559,846	+				-0.8
1,559,846	+				-0.5
1,559,854	-				-0.5
1,559,854	-				-0.9
1,559,854	-				-0.6
1,559,854	-				-1.7
1,559,855	+				-1.3
1,559,863	-				-0.1
1,559,870	+				-0.6
1,559,878	-				-2.4
1,559,878	-				+0.0
1,559,880	-				-1.8
1,559,913	-				-0.7
1,559,932	+				-2.1
1,559,935	-		GFF1529	0.10	-0.1
1,559,940	-		GFF1529	0.11	-1.2
1,559,940	-		GFF1529	0.11	-1.1
1,559,957	+		GFF1529	0.13	+0.3
1,559,957	+		GFF1529	0.13	-1.0
1,560,011	+		GFF1529	0.20	-0.6
1,560,011	+		GFF1529	0.20	+0.3
1,560,011	+		GFF1529	0.20	-0.2
1,560,011	+		GFF1529	0.20	+1.0
1,560,019	-		GFF1529	0.21	-0.9
1,560,019	-		GFF1529	0.21	+1.7
1,560,059	+		GFF1529	0.27	+0.0
1,560,111	+		GFF1529	0.33	-0.2
1,560,111	+		GFF1529	0.33	+0.6
1,560,119	-		GFF1529	0.35	-1.1
1,560,119	-		GFF1529	0.35	-1.3
1,560,119	-		GFF1529	0.35	+0.4
1,560,120	+		GFF1529	0.35	-1.4
1,560,120	+		GFF1529	0.35	-0.1
1,560,121	+		GFF1529	0.35	-0.5
1,560,128	-		GFF1529	0.36	-0.7
1,560,128	-		GFF1529	0.36	-0.2
1,560,159	+		GFF1529	0.40	-1.9
1,560,159	+		GFF1529	0.40	-1.6
1,560,159	+		GFF1529	0.40	+0.1
1,560,167	-		GFF1529	0.41	-2.5
1,560,167	-		GFF1529	0.41	-0.6
1,560,167	-		GFF1529	0.41	-1.8
1,560,172	-		GFF1529	0.42	-1.0
1,560,181	+		GFF1529	0.43	+0.0
1,560,227	+		GFF1529	0.49	+0.4
1,560,229	-		GFF1529	0.49	+0.0
1,560,232	+		GFF1529	0.49	-1.4
1,560,240	-		GFF1529	0.51	-2.3
1,560,249	+		GFF1529	0.52	+1.0
1,560,257	-		GFF1529	0.53	-0.7
1,560,282	-		GFF1529	0.56	+1.5
1,560,297	+		GFF1529	0.58	-0.1
1,560,298	-		GFF1529	0.58	-1.0
1,560,306	-		GFF1529	0.59	-1.4
1,560,324	+		GFF1529	0.62	-0.9
1,560,337	-		GFF1529	0.63	-1.0
1,560,342	+		GFF1529	0.64	+0.1
1,560,342	+		GFF1529	0.64	-1.0
1,560,342	+		GFF1529	0.64	-0.9
1,560,342	+		GFF1529	0.64	-2.1
1,560,342	+		GFF1529	0.64	-0.0
1,560,342	+		GFF1529	0.64	-0.7
1,560,343	-		GFF1529	0.64	-1.1
1,560,350	-		GFF1529	0.65	-0.7
1,560,350	-		GFF1529	0.65	+0.3
1,560,350	-		GFF1529	0.65	+0.3
1,560,350	-		GFF1529	0.65	+0.6
1,560,350	-		GFF1529	0.65	-0.2
1,560,354	+		GFF1529	0.66	+0.4
1,560,355	-		GFF1529	0.66	-0.6
1,560,362	-		GFF1529	0.67	-1.1
1,560,362	-		GFF1529	0.67	-1.0
1,560,430	-		GFF1529	0.76	-2.0
1,560,447	+		GFF1529	0.78	-0.7
1,560,447	+		GFF1529	0.78	-0.9
1,560,447	+		GFF1529	0.78	+1.3
1,560,460	+		GFF1529	0.80	-0.4
1,560,460	+		GFF1529	0.80	-0.3
1,560,460	+		GFF1529	0.80	-1.2
1,560,460	+		GFF1529	0.80	-0.5
1,560,460	+		GFF1529	0.80	+0.5
1,560,467	+		GFF1529	0.81	-0.2
1,560,468	-		GFF1529	0.81	-0.4
1,560,468	-		GFF1529	0.81	-0.4
1,560,494	-		GFF1529	0.84	+0.3
1,560,501	-		GFF1529	0.85	+0.3
1,560,503	+		GFF1529	0.85	-0.6
1,560,504	-		GFF1529	0.85	-0.9
1,560,512	+		GFF1529	0.87	+0.4
1,560,513	+		GFF1529	0.87	-1.0
1,560,513	+		GFF1529	0.87	-1.0
1,560,513	+		GFF1529	0.87	-1.4
1,560,513	+		GFF1529	0.87	-0.5
1,560,516	-		GFF1529	0.87	-0.5
1,560,523	+		GFF1529	0.88	+1.6
1,560,531	-		GFF1529	0.89	-0.1
1,560,531	-		GFF1529	0.89	+0.2
1,560,531	-		GFF1529	0.89	-1.5
1,560,548	+				-0.4
1,560,554	+				+0.3
1,560,556	-				-1.5
1,560,556	-				+0.3
1,560,556	-				-0.6
1,560,564	+				+0.3
1,560,564	+				+0.3
1,560,582	+				-1.0
1,560,582	+				-1.2
1,560,582	+				-0.5
1,560,582	+				+0.5
1,560,590	-				+0.2
1,560,590	-				-0.8
1,560,590	-				+0.8
1,560,590	-				+0.6
1,560,593	+				+0.3
1,560,608	+				-0.6
1,560,616	-				-1.5
1,560,632	+				-0.4
1,560,632	+				+1.4
1,560,632	+				-0.5
1,560,632	+				-1.1
1,560,632	+				-1.1
1,560,632	+				-1.0
1,560,632	+				+1.0
1,560,632	+				+0.5
1,560,637	+				-1.0
1,560,637	+				-2.2
1,560,640	-				-1.4
1,560,640	-				+0.4
1,560,640	-				+0.4
1,560,645	-				-2.0
1,560,645	-				+0.4
1,560,646	-				-1.3
1,560,650	-				-0.2
1,560,660	-				+0.1
1,560,684	+				+0.5
1,560,695	+		GFF1530	0.11	-2.6
1,560,708	-		GFF1530	0.12	-1.2
1,560,714	+		GFF1530	0.13	-0.6
1,560,744	+		GFF1530	0.17	+1.0
1,560,744	+		GFF1530	0.17	+0.0
1,560,744	+		GFF1530	0.17	-0.7
1,560,744	+		GFF1530	0.17	-0.6
1,560,744	+		GFF1530	0.17	+0.0
1,560,744	+		GFF1530	0.17	-0.5
1,560,752	-		GFF1530	0.18	-1.9
1,560,763	-		GFF1530	0.19	+1.3
1,560,801	+		GFF1530	0.24	-0.4
1,560,858	+		GFF1530	0.31	-0.7
1,560,859	+		GFF1530	0.31	-0.3
1,560,864	+		GFF1530	0.31	-0.7
1,560,866	-		GFF1530	0.32	-0.6
1,560,866	-		GFF1530	0.32	-1.9
1,560,866	-		GFF1530	0.32	-1.1
1,560,874	+		GFF1530	0.33	-1.1
1,560,904	-		GFF1530	0.36	-1.2
1,560,912	+		GFF1530	0.37	-0.6
1,560,912	+		GFF1530	0.37	-0.9
1,560,912	+		GFF1530	0.37	+0.6
1,560,912	+		GFF1530	0.37	-1.6
1,560,912	+		GFF1530	0.37	-0.1
1,560,912	+		GFF1530	0.37	+0.3
1,560,913	-		GFF1530	0.38	-0.1
1,560,917	+		GFF1530	0.38	-0.6
1,560,917	+		GFF1530	0.38	+0.3
1,560,920	-		GFF1530	0.38	-0.7
1,560,920	-		GFF1530	0.38	-0.7
1,560,920	-		GFF1530	0.38	-0.6
1,560,922	+		GFF1530	0.39	+0.9
1,560,927	+		GFF1530	0.39	-1.0
1,560,927	+		GFF1530	0.39	-0.9
1,560,927	+		GFF1530	0.39	-1.2
1,560,930	-		GFF1530	0.40	+0.4
1,560,935	-		GFF1530	0.40	-0.1
1,560,935	-		GFF1530	0.40	-0.3
1,560,953	+		GFF1530	0.43	-0.8
1,560,955	+		GFF1530	0.43	+1.0
1,560,955	+		GFF1530	0.43	-1.1
1,560,955	+		GFF1530	0.43	+0.9
1,560,955	+		GFF1530	0.43	-0.0
1,560,956	-		GFF1530	0.43	-1.5
1,560,963	-		GFF1530	0.44	-1.0
1,560,963	-		GFF1530	0.44	+0.3
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