Strain Fitness in Sphingobium sp. HT1-2 around GFF1500

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,526,171	-		GFF1499	0.31	+0.2
1,526,181	+		GFF1499	0.32	+0.4
1,526,189	-		GFF1499	0.32	+1.6
1,526,224	+		GFF1499	0.35	-1.2
1,526,230	+		GFF1499	0.35	-0.4
1,526,230	+		GFF1499	0.35	-1.2
1,526,232	-		GFF1499	0.36	-0.2
1,526,232	-		GFF1499	0.36	-0.7
1,526,232	-		GFF1499	0.36	-0.2
1,526,232	-		GFF1499	0.36	+1.5
1,526,232	-		GFF1499	0.36	-1.9
1,526,232	-		GFF1499	0.36	-0.2
1,526,235	+		GFF1499	0.36	-0.1
1,526,238	-		GFF1499	0.36	-0.5
1,526,238	-		GFF1499	0.36	-1.4
1,526,238	-		GFF1499	0.36	-1.2
1,526,262	+		GFF1499	0.38	+0.0
1,526,267	+		GFF1499	0.38	-0.5
1,526,270	-		GFF1499	0.38	-0.6
1,526,272	+		GFF1499	0.38	-0.1
1,526,274	+		GFF1499	0.39	-0.2
1,526,274	+		GFF1499	0.39	-1.1
1,526,280	-		GFF1499	0.39	-2.1
1,526,292	-		GFF1499	0.40	+0.9
1,526,425	-		GFF1499	0.50	+0.6
1,526,425	-		GFF1499	0.50	-1.0
1,526,428	-		GFF1499	0.50	+0.9
1,526,434	+		GFF1499	0.50	+0.7
1,526,447	-		GFF1499	0.51	-0.6
1,526,478	-		GFF1499	0.53	+0.8
1,526,504	+		GFF1499	0.55	-0.2
1,526,504	+		GFF1499	0.55	-0.4
1,526,513	+		GFF1499	0.56	-0.6
1,526,536	-		GFF1499	0.58	+0.6
1,526,546	+		GFF1499	0.58	-0.4
1,526,607	+		GFF1499	0.63	+0.7
1,526,611	+		GFF1499	0.63	-0.8
1,526,650	-		GFF1499	0.66	-1.4
1,526,683	+		GFF1499	0.68	-0.2
1,526,703	+		GFF1499	0.70	-0.1
1,526,704	-		GFF1499	0.70	-0.7
1,526,727	-		GFF1499	0.72	+0.7
1,526,758	-		GFF1499	0.74	-0.5
1,526,759	+		GFF1499	0.74	+0.9
1,526,759	+		GFF1499	0.74	+0.6
1,526,760	+		GFF1499	0.74	+0.6
1,526,767	-		GFF1499	0.75	-0.0
1,526,784	+		GFF1499	0.76	-0.2
1,526,792	-		GFF1499	0.76	-0.3
1,526,802	-		GFF1499	0.77	+0.1
1,526,816	-		GFF1499	0.78	+0.1
1,526,831	-		GFF1499	0.79	-0.5
1,526,834	+		GFF1499	0.79	-1.0
1,526,840	-		GFF1499	0.80	+0.3
1,526,865	+		GFF1499	0.82	+0.9
1,526,887	-		GFF1499	0.83	+0.2
1,526,892	+		GFF1499	0.84	+1.1
1,526,892	+		GFF1499	0.84	-0.1
1,526,892	+		GFF1499	0.84	-1.6
1,526,892	+		GFF1499	0.84	-1.0
1,526,892	+		GFF1499	0.84	-0.3
1,526,895	+		GFF1499	0.84	-0.5
1,526,897	+		GFF1499	0.84	-0.4
1,526,897	+		GFF1499	0.84	-0.3
1,526,897	+		GFF1499	0.84	-1.0
1,526,897	+		GFF1499	0.84	-0.2
1,526,897	+		GFF1499	0.84	-1.0
1,526,897	+		GFF1499	0.84	+0.6
1,526,900	-		GFF1499	0.84	+0.2
1,526,900	-		GFF1499	0.84	-0.5
1,526,905	-		GFF1499	0.85	-1.3
1,526,905	-		GFF1499	0.85	+0.0
1,526,905	-		GFF1499	0.85	-1.9
1,526,905	-		GFF1499	0.85	+1.6
1,526,905	-		GFF1499	0.85	+0.4
1,526,916	+		GFF1499	0.85	+1.0
1,526,951	+		GFF1499	0.88	-1.5
1,526,951	+		GFF1499	0.88	-0.4
1,526,951	+		GFF1499	0.88	+1.4
1,526,959	-		GFF1499	0.89	-0.5
1,526,959	-		GFF1499	0.89	-0.3
1,526,959	-		GFF1499	0.89	-0.2
1,526,960	-		GFF1499	0.89	+0.4
1,527,015	+				+0.9
1,527,025	+				-0.3
1,527,042	+				-0.1
1,527,050	-				+0.8
1,527,050	-				-0.6
1,527,050	-				-0.6
1,527,050	-				-0.4
1,527,088	+				+0.4
1,527,106	+				+0.4
1,527,120	-				-1.2
1,527,122	+				+0.8
1,527,145	-				-1.2
1,527,147	+				-1.0
1,527,155	-				-0.5
1,527,171	-				-1.1
1,527,171	-				-0.3
1,527,200	+				-0.7
1,527,200	+				+0.8
1,527,208	-				+0.4
1,527,213	-				-0.8
1,527,240	-				-0.3
1,527,250	+				+0.4
1,527,289	+				-0.8
1,527,294	+				+1.1
1,527,294	+				-1.1
1,527,294	+				+0.5
1,527,297	-				-1.2
1,527,297	-				-0.8
1,527,297	-				+0.3
1,527,299	+				-1.3
1,527,319	+				-1.0
1,527,390	+		GFF1500	0.12	-1.4
1,527,390	+		GFF1500	0.12	-1.0
1,527,390	+		GFF1500	0.12	+0.4
1,527,390	+		GFF1500	0.12	+1.2
1,527,395	+		GFF1500	0.12	-0.9
1,527,398	-		GFF1500	0.13	-1.7
1,527,402	-		GFF1500	0.13	-0.3
1,527,423	-		GFF1500	0.14	-0.0
1,527,429	+		GFF1500	0.14	-1.8
1,527,467	+		GFF1500	0.16	-1.3
1,527,467	+		GFF1500	0.16	-1.9
1,527,472	+		GFF1500	0.17	-0.5
1,527,527	+		GFF1500	0.19	-2.2
1,527,527	+		GFF1500	0.19	-0.4
1,527,527	+		GFF1500	0.19	-0.9
1,527,535	-		GFF1500	0.20	-1.8
1,527,535	-		GFF1500	0.20	+0.5
1,527,535	-		GFF1500	0.20	-1.5
1,527,535	-		GFF1500	0.20	-0.2
1,527,535	-		GFF1500	0.20	+0.5
1,527,540	+		GFF1500	0.20	-0.2
1,527,549	+		GFF1500	0.21	+1.0
1,527,553	-		GFF1500	0.21	-0.1
1,527,554	-		GFF1500	0.21	+1.0
1,527,559	+		GFF1500	0.21	+0.9
1,527,569	+		GFF1500	0.22	-0.5
1,527,577	-		GFF1500	0.22	+0.2
1,527,577	-		GFF1500	0.22	+0.9
1,527,606	-		GFF1500	0.24	+0.0
1,527,608	-		GFF1500	0.24	+0.0
1,527,608	-		GFF1500	0.24	-1.5
1,527,613	+		GFF1500	0.24	-0.3
1,527,655	+		GFF1500	0.26	-0.4
1,527,657	+		GFF1500	0.26	-0.3
1,527,661	-		GFF1500	0.26	+0.9
1,527,711	-		GFF1500	0.29	+0.1
1,527,728	+		GFF1500	0.30	+0.0
1,527,733	-		GFF1500	0.30	+1.3
1,527,734	+		GFF1500	0.30	-0.5
1,527,736	-		GFF1500	0.30	+0.5
1,527,740	-		GFF1500	0.31	+0.6
1,527,746	-		GFF1500	0.31	-1.9
1,527,754	+		GFF1500	0.31	+0.2
1,527,754	+		GFF1500	0.31	-2.6
1,527,762	-		GFF1500	0.32	+0.4
1,527,762	-		GFF1500	0.32	+0.4
1,527,762	-		GFF1500	0.32	-0.9
1,527,762	-		GFF1500	0.32	-0.9
1,527,762	-		GFF1500	0.32	-0.3
1,527,762	-		GFF1500	0.32	-1.1
1,527,762	-		GFF1500	0.32	-0.8
1,527,762	-		GFF1500	0.32	+0.6
1,527,762	-		GFF1500	0.32	-1.6
1,527,762	-		GFF1500	0.32	+1.0
1,527,782	+		GFF1500	0.33	-1.6
1,527,782	+		GFF1500	0.33	-0.5
1,527,782	+		GFF1500	0.33	+0.8
1,527,782	+		GFF1500	0.33	+0.9
1,527,790	-		GFF1500	0.33	-0.1
1,527,790	-		GFF1500	0.33	-0.5
1,527,800	-		GFF1500	0.34	+0.8
1,527,826	-		GFF1500	0.35	-0.1
1,527,829	+		GFF1500	0.35	-0.2
1,527,829	+		GFF1500	0.35	+1.4
1,527,835	+		GFF1500	0.36	-1.1
1,527,843	-		GFF1500	0.36	-0.2
1,527,858	+		GFF1500	0.37	+0.4
1,527,858	+		GFF1500	0.37	+1.3
1,527,858	+		GFF1500	0.37	+0.6
1,527,858	+		GFF1500	0.37	+0.6
1,527,858	+		GFF1500	0.37	-0.6
1,527,866	-		GFF1500	0.37	+0.1
1,527,880	+		GFF1500	0.38	-1.1
1,527,888	-		GFF1500	0.38	-2.0
1,527,889	+		GFF1500	0.39	-1.2
1,527,899	+		GFF1500	0.39	-1.7
1,527,899	+		GFF1500	0.39	+0.5
1,527,899	+		GFF1500	0.39	-0.4
1,527,899	+		GFF1500	0.39	-0.4
1,527,899	+		GFF1500	0.39	+0.3
1,527,899	+		GFF1500	0.39	+0.4
1,527,899	+		GFF1500	0.39	+0.0
1,527,907	-		GFF1500	0.39	-2.0
1,527,907	-		GFF1500	0.39	+0.1
1,527,907	-		GFF1500	0.39	+1.1
1,527,907	-		GFF1500	0.39	+0.6
1,527,907	-		GFF1500	0.39	+1.2
1,527,909	-		GFF1500	0.40	+1.3
1,527,953	-		GFF1500	0.42	-0.3
1,527,958	-		GFF1500	0.42	-0.7
1,527,971	+		GFF1500	0.43	-0.5
1,527,971	+		GFF1500	0.43	-0.5
1,527,971	+		GFF1500	0.43	-0.9
1,527,976	+		GFF1500	0.43	+0.3
1,527,979	-		GFF1500	0.43	-0.8
1,527,984	-		GFF1500	0.44	-0.5
1,527,984	-		GFF1500	0.44	-0.3
1,528,007	+		GFF1500	0.45	-0.8
1,528,015	-		GFF1500	0.45	-1.0
1,528,077	+		GFF1500	0.48	-0.8
1,528,077	+		GFF1500	0.48	+1.4
1,528,085	-		GFF1500	0.49	+1.5
1,528,112	+		GFF1500	0.50	-0.1
1,528,144	+		GFF1500	0.52	-1.3
1,528,144	+		GFF1500	0.52	-0.9
1,528,144	+		GFF1500	0.52	-1.2
1,528,147	-		GFF1500	0.52	-0.4
1,528,152	-		GFF1500	0.52	+0.9
1,528,163	+		GFF1500	0.53	-1.0
1,528,186	+		GFF1500	0.54	+0.4
1,528,186	+		GFF1500	0.54	+1.2
1,528,186	+		GFF1500	0.54	-0.2
1,528,191	+		GFF1500	0.54	-1.3
1,528,191	+		GFF1500	0.54	-0.9
1,528,191	+		GFF1500	0.54	+1.4
1,528,191	+		GFF1500	0.54	+0.2
1,528,191	+		GFF1500	0.54	-1.2
1,528,191	+		GFF1500	0.54	+0.6
1,528,191	+		GFF1500	0.54	+0.2
1,528,191	+		GFF1500	0.54	+1.4
1,528,191	+		GFF1500	0.54	+0.9
1,528,191	+		GFF1500	0.54	-1.2
1,528,194	-		GFF1500	0.55	+0.4
1,528,194	-		GFF1500	0.55	-2.0
1,528,194	-		GFF1500	0.55	+0.6
1,528,194	-		GFF1500	0.55	-1.0
1,528,199	-		GFF1500	0.55	-1.4
1,528,199	-		GFF1500	0.55	-0.2
1,528,199	-		GFF1500	0.55	-0.2
1,528,199	-		GFF1500	0.55	+0.0
1,528,199	-		GFF1500	0.55	-0.4
1,528,199	-		GFF1500	0.55	+0.8
1,528,199	-		GFF1500	0.55	+0.4
1,528,199	-		GFF1500	0.55	+0.3
1,528,199	-		GFF1500	0.55	-1.9
1,528,199	-		GFF1500	0.55	+1.7
1,528,199	-		GFF1500	0.55	-0.3
1,528,224	-		GFF1500	0.56	-0.9
1,528,242	+		GFF1500	0.57	-0.3
1,528,243	-		GFF1500	0.57	+1.3
1,528,260	-		GFF1500	0.58	+0.4
1,528,270	-		GFF1500	0.59	+1.9
1,528,289	-		GFF1500	0.60	+0.1
1,528,289	-		GFF1500	0.60	-0.1
1,528,289	-		GFF1500	0.60	+0.4
1,528,297	-		GFF1500	0.60	+0.1
1,528,326	-		GFF1500	0.62	+0.5
1,528,348	+		GFF1500	0.63	-0.9
1,528,348	+		GFF1500	0.63	+0.4
1,528,348	+		GFF1500	0.63	+0.2
1,528,348	+		GFF1500	0.63	-0.3
1,528,354	+		GFF1500	0.63	-1.2
1,528,356	-		GFF1500	0.63	-1.3
1,528,367	+		GFF1500	0.64	-0.3
1,528,374	+		GFF1500	0.64	-1.6
1,528,375	-		GFF1500	0.64	+1.7
1,528,382	-		GFF1500	0.65	-0.3
1,528,404	-		GFF1500	0.66	-0.2
1,528,404	-		GFF1500	0.66	-1.0
1,528,406	+		GFF1500	0.66	-0.7
1,528,413	+		GFF1500	0.66	-1.2
1,528,414	-		GFF1500	0.66	-0.7
1,528,414	-		GFF1500	0.66	+2.1
1,528,421	-		GFF1500	0.67	+0.7
1,528,421	-		GFF1500	0.67	+0.1
1,528,446	-		GFF1500	0.68	-1.4
1,528,450	-		GFF1500	0.68	+0.8
1,528,459	+		GFF1500	0.69	-0.5
1,528,467	-		GFF1500	0.69	-0.3
1,528,468	+		GFF1500	0.69	-0.3
1,528,484	+		GFF1500	0.70	-0.2
1,528,484	-		GFF1500	0.70	+1.4
1,528,497	+		GFF1500	0.71	+0.2
1,528,497	+		GFF1500	0.71	+0.4
1,528,506	+		GFF1500	0.71	+0.7
1,528,523	+		GFF1500	0.72	+0.2
1,528,523	+		GFF1500	0.72	+0.4
1,528,523	+		GFF1500	0.72	+0.2
1,528,523	+		GFF1500	0.72	-1.1
1,528,523	+		GFF1500	0.72	+0.0
1,528,523	+		GFF1500	0.72	+0.9
1,528,523	+		GFF1500	0.72	+0.6
1,528,523	+		GFF1500	0.72	+0.2
1,528,523	+		GFF1500	0.72	+0.7
1,528,523	+		GFF1500	0.72	-0.1
1,528,523	+		GFF1500	0.72	+0.8
1,528,531	-		GFF1500	0.72	-0.7
1,528,531	-		GFF1500	0.72	-0.1
1,528,531	-		GFF1500	0.72	-1.1
1,528,531	-		GFF1500	0.72	+0.4
1,528,531	-		GFF1500	0.72	-0.6
1,528,531	-		GFF1500	0.72	-0.7
1,528,531	-		GFF1500	0.72	-0.2
1,528,531	-		GFF1500	0.72	-0.2
1,528,531	-		GFF1500	0.72	-0.5
1,528,538	+		GFF1500	0.73	+0.4
1,528,540	+		GFF1500	0.73	-0.4
1,528,540	+		GFF1500	0.73	+0.4
1,528,540	+		GFF1500	0.73	-0.5
1,528,548	-		GFF1500	0.73	-0.6
1,528,559	+		GFF1500	0.74	-1.4
1,528,563	+		GFF1500	0.74	+1.4
1,528,563	+		GFF1500	0.74	+0.9
1,528,563	+		GFF1500	0.74	-0.5
1,528,563	+		GFF1500	0.74	-0.7
1,528,563	+		GFF1500	0.74	-0.3
1,528,563	+		GFF1500	0.74	-0.5
1,528,568	+		GFF1500	0.74	-1.0
1,528,571	-		GFF1500	0.74	-0.5
1,528,571	-		GFF1500	0.74	-0.6
1,528,571	-		GFF1500	0.74	-2.2
1,528,571	-		GFF1500	0.74	-0.1
1,528,571	-		GFF1500	0.74	-0.3
1,528,571	-		GFF1500	0.74	+0.1
1,528,571	-		GFF1500	0.74	-0.2
1,528,571	-		GFF1500	0.74	-0.5
1,528,571	-		GFF1500	0.74	-1.9
1,528,589	-		GFF1500	0.75	-1.0
1,528,589	-		GFF1500	0.75	+1.2
1,528,594	+		GFF1500	0.76	+0.4
1,528,606	+		GFF1500	0.76	-0.2
1,528,606	+		GFF1500	0.76	-0.6
1,528,612	-		GFF1500	0.77	+0.3
1,528,612	-		GFF1500	0.77	-0.9
1,528,612	-		GFF1500	0.77	+0.2
1,528,614	-		GFF1500	0.77	-1.8
1,528,614	-		GFF1500	0.77	-0.6
1,528,614	-		GFF1500	0.77	+0.7
1,528,614	-		GFF1500	0.77	+0.6
1,528,625	+		GFF1500	0.77	+1.0
1,528,633	-		GFF1500	0.78	-0.2
1,528,676	+		GFF1500	0.80	-1.4
1,528,676	+		GFF1500	0.80	-1.3
1,528,676	+		GFF1500	0.80	-0.1
1,528,679	-		GFF1500	0.80	-0.1
1,528,684	-		GFF1500	0.80	-0.9
1,528,693	+		GFF1500	0.81	+0.6
1,528,713	+		GFF1500	0.82	+0.6
1,528,713	+		GFF1500	0.82	-1.5
1,528,713	+		GFF1500	0.82	-1.0
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1,528,721	-		GFF1500	0.82	-0.5
1,528,723	-		GFF1500	0.82	-0.5
1,528,723	-		GFF1500	0.82	-1.3
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1,528,750	-		GFF1500	0.84	-1.0
1,528,773	+		GFF1500	0.85	+0.4
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1,528,773	-		GFF1500	0.85	-0.0
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1,528,780	-		GFF1500	0.85	+1.2
1,528,782	-		GFF1500	0.86	-0.6
1,528,782	-		GFF1500	0.86	+1.5
1,528,796	-		GFF1500	0.86	+0.6
1,528,836	+		GFF1500	0.88	-1.2
1,528,836	+		GFF1500	0.88	+0.6
1,528,856	-		GFF1500	0.90	+0.2
1,528,857	-		GFF1500	0.90	+0.2
1,528,879	-				+0.1
1,528,916	-				-0.9
1,528,919	+				+1.0
1,528,919	+				+0.4
1,528,926	+				+0.6
1,528,927	-				-1.7
1,528,931	+				+0.4
1,528,936	+				-0.2
1,528,936	+				+0.5
1,528,936	+				+1.5
1,528,936	+				+0.2
1,528,936	+				-1.2
1,528,939	-				-2.0
1,528,939	-				-1.8
1,528,944	-				+1.0
1,528,944	-				-0.9
1,528,944	-				+0.2
1,528,944	-				+0.7
1,528,944	-				-0.4
1,528,944	-				-1.1
1,528,944	-				+0.8
1,528,976	+				-0.1
1,528,977	+				-0.4
1,528,987	+				-0.9
1,528,990	-				-1.8
1,528,995	-				+0.3
1,528,995	-				+0.4
1,529,002	+				-0.1
1,529,002	+				-0.2
1,529,056	+				-0.3
1,529,056	+				-0.2
1,529,062	+				-0.1
1,529,062	+				-0.2
1,529,062	+				-2.0
1,529,062	+				+0.1
1,529,062	+				-0.7
1,529,062	+				-0.2
1,529,062	+				-1.3
1,529,062	+				-0.7
1,529,064	-				-0.6
1,529,070	-				-0.9
1,529,070	-				+0.8
1,529,070	-				-1.6
1,529,070	-				-1.5
1,529,070	-				+0.3
1,529,070	-				-1.0
1,529,070	-				-0.7
1,529,070	-				+1.0
1,529,070	-				-0.3
1,529,070	-				-0.9
1,529,070	-				+0.1
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1,529,070	-				+0.6
1,529,070	-				+1.2
1,529,070	-				-1.3
1,529,070	-				-2.5
1,529,070	-				-0.7
1,529,076	-				+1.4
1,529,102	+				-0.3
1,529,154	-				-1.0
1,529,179	+				-0.4
1,529,196	+				-0.5
1,529,204	-				-0.5
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1,529,292	-		GFF1501	0.15	-1.8
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1,529,328	-		GFF1501	0.17	+0.0
1,529,365	-		GFF1501	0.20	-0.9
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1,529,377	-		GFF1501	0.20	-0.1
1,529,391	-		GFF1501	0.21	-0.3
1,529,400	+		GFF1501	0.22	-0.3
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1,529,408	-		GFF1501	0.22	-1.3
1,529,413	-		GFF1501	0.23	-0.6
1,529,413	-		GFF1501	0.23	+1.1
1,529,413	-		GFF1501	0.23	-0.3
1,529,415	+		GFF1501	0.23	-1.0
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1,529,423	-		GFF1501	0.23	-2.1
1,529,423	-		GFF1501	0.23	-1.8
1,529,428	-		GFF1501	0.24	-1.7
1,529,436	+		GFF1501	0.24	-0.3
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1,529,557	-		GFF1501	0.32	-1.8
1,529,560	+		GFF1501	0.32	-1.6
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1,529,574	+		GFF1501	0.33	-1.0
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1,529,592	+		GFF1501	0.34	+0.2
1,529,630	+		GFF1501	0.37	-1.0
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1,529,649	+		GFF1501	0.38	-0.1
1,529,700	+		GFF1501	0.41	-0.1
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1,529,737	-		GFF1501	0.44	-1.9
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1,529,835	-		GFF1501	0.50	-0.1
1,529,854	+		GFF1501	0.51	-0.8
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1,529,894	+		GFF1501	0.54	-1.3
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1,529,894	+		GFF1501	0.54	-0.2
1,529,894	+		GFF1501	0.54	-0.1
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1,529,899	+		GFF1501	0.54	-0.9
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1,529,909	+		GFF1501	0.55	-1.2
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1,529,922	-		GFF1501	0.56	-1.6
1,529,964	+		GFF1501	0.59	-1.3
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1,529,969	+		GFF1501	0.59	-0.9
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