Strain Fitness in Sphingobium sp. HT1-2 around GFF1463

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,489,129	+		GFF1461	0.15	+0.7
1,489,168	+		GFF1461	0.23	-0.2
1,489,211	+		GFF1461	0.32	-0.7
1,489,211	+		GFF1461	0.32	-0.2
1,489,274	-		GFF1461	0.46	-0.1
1,489,354	+		GFF1461	0.63	-0.8
1,489,385	+		GFF1461	0.69	+0.8
1,489,416	+		GFF1461	0.76	-0.1
1,489,427	-		GFF1461	0.78	-0.8
1,489,450	+		GFF1461	0.83	-0.0
1,489,450	+		GFF1461	0.83	+1.4
1,489,458	-		GFF1461	0.85	-0.5
1,489,471	+		GFF1461	0.87	+0.2
1,489,477	+		GFF1461	0.89	+1.0
1,489,484	+				-0.6
1,489,504	+				-1.2
1,489,511	+				+0.8
1,489,511	+				-2.0
1,489,511	+				-0.7
1,489,511	+				-0.5
1,489,514	+				-0.6
1,489,519	-				-0.2
1,489,535	+				-0.2
1,489,543	-				-0.2
1,489,569	+				-0.1
1,489,658	-		GFF1462	0.22	-0.6
1,489,688	+		GFF1462	0.27	-1.1
1,489,773	-		GFF1462	0.42	-0.1
1,489,883	+		GFF1462	0.62	+0.5
1,489,900	+		GFF1462	0.65	-1.0
1,490,034	+		GFF1462	0.89	+1.3
1,490,076	-				+1.1
1,490,122	+				-1.3
1,490,123	+				+0.4
1,490,123	-				-1.9
1,490,131	-				-0.7
1,490,165	+				-3.4
1,490,170	+				-1.4
1,490,173	+				+0.5
1,490,178	-				+0.5
1,490,187	+				+1.8
1,490,188	-				-0.2
1,490,218	+		GFF1463	0.12	+0.1
1,490,234	+		GFF1463	0.14	-0.2
1,490,235	+		GFF1463	0.14	-0.5
1,490,243	-		GFF1463	0.15	-1.2
1,490,277	+		GFF1463	0.19	-1.0
1,490,307	+		GFF1463	0.23	-0.9
1,490,307	+		GFF1463	0.23	-1.0
1,490,307	+		GFF1463	0.23	+1.2
1,490,307	+		GFF1463	0.23	-0.8
1,490,307	+		GFF1463	0.23	-1.9
1,490,307	+		GFF1463	0.23	-0.8
1,490,307	+		GFF1463	0.23	-0.7
1,490,307	+		GFF1463	0.23	-0.5
1,490,315	-		GFF1463	0.24	+0.3
1,490,315	-		GFF1463	0.24	+0.7
1,490,315	-		GFF1463	0.24	-2.5
1,490,315	-		GFF1463	0.24	+2.0
1,490,315	-		GFF1463	0.24	-0.3
1,490,337	-		GFF1463	0.27	+0.3
1,490,359	+		GFF1463	0.30	-1.6
1,490,368	+		GFF1463	0.31	-0.7
1,490,368	+		GFF1463	0.31	-0.1
1,490,368	+		GFF1463	0.31	-0.8
1,490,368	+		GFF1463	0.31	+0.6
1,490,368	+		GFF1463	0.31	-1.0
1,490,368	+		GFF1463	0.31	-0.2
1,490,368	+		GFF1463	0.31	-0.7
1,490,368	+		GFF1463	0.31	+0.2
1,490,369	+		GFF1463	0.31	-1.2
1,490,376	-		GFF1463	0.32	-1.0
1,490,376	-		GFF1463	0.32	-1.5
1,490,376	-		GFF1463	0.32	-0.5
1,490,376	-		GFF1463	0.32	+0.7
1,490,376	-		GFF1463	0.32	-0.7
1,490,376	-		GFF1463	0.32	-0.4
1,490,376	-		GFF1463	0.32	-0.9
1,490,376	-		GFF1463	0.32	-1.2
1,490,376	-		GFF1463	0.32	+0.0
1,490,376	-		GFF1463	0.32	+0.5
1,490,376	-		GFF1463	0.32	-0.4
1,490,388	-		GFF1463	0.34	-0.3
1,490,397	+		GFF1463	0.35	-1.0
1,490,397	+		GFF1463	0.35	-0.5
1,490,407	+		GFF1463	0.36	-0.7
1,490,407	+		GFF1463	0.36	+0.3
1,490,407	+		GFF1463	0.36	-0.8
1,490,532	+		GFF1463	0.52	-2.2
1,490,540	-		GFF1463	0.53	+1.1
1,490,574	+		GFF1463	0.58	+0.5
1,490,574	+		GFF1463	0.58	-0.1
1,490,582	-		GFF1463	0.59	-1.0
1,490,582	-		GFF1463	0.59	-2.1
1,490,650	-		GFF1463	0.67	+0.2
1,490,664	+		GFF1463	0.69	+0.5
1,490,664	+		GFF1463	0.69	-1.1
1,490,664	+		GFF1463	0.69	-1.4
1,490,667	+		GFF1463	0.70	-0.6
1,490,694	+		GFF1463	0.73	-1.9
1,490,694	+		GFF1463	0.73	+0.2
1,490,699	+		GFF1463	0.74	-0.9
1,490,702	-		GFF1463	0.74	+0.1
1,490,702	-		GFF1463	0.74	+0.5
1,490,704	+		GFF1463	0.74	-0.6
1,490,760	-		GFF1463	0.82	-1.0
1,490,780	-		GFF1463	0.84	-1.1
1,490,832	+				+0.1
1,490,845	-				+0.0
1,490,864	-				-1.7
1,490,872	+				+0.3
1,490,872	+				-0.1
1,490,872	+				-1.0
1,490,872	+				-1.0
1,490,877	+				-0.1
1,490,880	-				-1.2
1,490,891	+				-0.2
1,490,896	+				+0.8
1,490,898	+				-1.2
1,490,898	+				-0.0
1,490,906	-				-0.6
1,490,920	+				+0.7
1,490,920	+				-0.3
1,490,920	-				-1.1
1,490,977	-				+0.1
1,490,977	-				-0.9
1,491,009	-				+0.3
1,491,009	-				-1.4
1,491,011	+				+0.7
1,491,019	-				+1.6
1,491,019	-				-0.8
1,491,035	+				+0.2
1,491,057	+				+0.8
1,491,057	+				-1.1
1,491,057	+				-1.4
1,491,063	+				-1.4
1,491,063	-				-1.5
1,491,079	-				-2.5
1,491,093	+				-1.1
1,491,105	+				-0.5
1,491,106	-				+1.2
1,491,112	-				+0.0
1,491,149	+				-1.0
1,491,152	-				-1.6
1,491,157	-				+1.5
1,491,184	+				+0.3
1,491,184	+				+1.2
1,491,200	+				-1.5
1,491,208	-				+0.7
1,491,246	+				+0.2
1,491,249	-				-1.5
1,491,253	+				-1.7
1,491,254	-				+0.2
1,491,261	-				+2.2
1,491,286	+				+1.5
1,491,296	+				+1.3
1,491,296	+				+0.8
1,491,299	-				-0.6
1,491,304	-		GFF1464	0.10	-1.1
1,491,318	+		GFF1464	0.11	-0.7
1,491,345	+		GFF1464	0.11	-0.3
1,491,388	+		GFF1464	0.13	-0.9
1,491,405	-		GFF1464	0.14	-1.9
1,491,416	-		GFF1464	0.14	+0.8
1,491,422	-		GFF1464	0.14	-0.4
1,491,551	+		GFF1464	0.19	-1.4
1,491,557	-		GFF1464	0.19	+0.2
1,491,575	+		GFF1464	0.20	+0.9
1,491,583	-		GFF1464	0.20	-1.1
1,491,586	+		GFF1464	0.20	+0.6
1,491,586	+		GFF1464	0.20	+0.1
1,491,594	-		GFF1464	0.20	-0.9
1,491,602	-		GFF1464	0.21	-0.5
1,491,602	-		GFF1464	0.21	+0.5
1,491,660	-		GFF1464	0.23	-0.2
1,491,697	+		GFF1464	0.24	+0.9
1,491,699	-		GFF1464	0.24	-0.2
1,491,700	-		GFF1464	0.24	-1.7
1,491,700	-		GFF1464	0.24	-0.7
1,491,705	-		GFF1464	0.24	-0.3
1,491,731	-		GFF1464	0.25	-0.1
1,491,749	+		GFF1464	0.26	+2.0
1,491,749	+		GFF1464	0.26	-0.2
1,491,749	+		GFF1464	0.26	-1.1
1,491,749	+		GFF1464	0.26	-0.1
1,491,752	-		GFF1464	0.26	+0.3
1,491,757	-		GFF1464	0.26	-0.7
1,491,774	+		GFF1464	0.27	+0.0
1,491,774	+		GFF1464	0.27	-0.1
1,491,774	+		GFF1464	0.27	+0.9
1,491,782	-		GFF1464	0.27	+0.5
1,491,782	-		GFF1464	0.27	-0.7
1,491,782	-		GFF1464	0.27	+1.3
1,491,782	-		GFF1464	0.27	-0.2
1,491,782	-		GFF1464	0.27	-1.4
1,491,815	+		GFF1464	0.28	-1.2
1,491,815	-		GFF1464	0.28	-1.8
1,491,828	-		GFF1464	0.29	+0.0
1,491,844	-		GFF1464	0.29	-1.5
1,491,846	+		GFF1464	0.29	-0.5
1,491,873	+		GFF1464	0.30	-0.5
1,491,888	+		GFF1464	0.31	+0.8
1,491,894	-		GFF1464	0.31	-0.4