Strain Fitness in Sphingobium sp. HT1-2 around GFF1398

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,424,256	-				-0.1
1,424,256	-				-0.1
1,424,258	+				-1.1
1,424,258	-				-1.1
1,424,261	-				-1.0
1,424,268	+				-1.4
1,424,275	-		GFF1397	0.10	-0.3
1,424,275	-		GFF1397	0.10	-0.1
1,424,275	-		GFF1397	0.10	-0.4
1,424,276	-		GFF1397	0.10	+1.2
1,424,291	-		GFF1397	0.12	+0.2
1,424,303	+		GFF1397	0.13	-2.1
1,424,304	+		GFF1397	0.13	-1.9
1,424,312	-		GFF1397	0.14	-1.1
1,424,314	+		GFF1397	0.14	+0.0
1,424,321	-		GFF1397	0.15	-0.3
1,424,322	-		GFF1397	0.15	-0.8
1,424,322	-		GFF1397	0.15	-0.5
1,424,356	+		GFF1397	0.18	-0.1
1,424,356	+		GFF1397	0.18	-0.1
1,424,383	+		GFF1397	0.21	+0.6
1,424,389	-		GFF1397	0.21	-2.3
1,424,423	-		GFF1397	0.24	-2.0
1,424,450	+		GFF1397	0.27	-0.6
1,424,458	-		GFF1397	0.28	-1.5
1,424,458	-		GFF1397	0.28	-0.3
1,424,458	-		GFF1397	0.28	-1.4
1,424,480	+		GFF1397	0.30	+0.3
1,424,485	+		GFF1397	0.30	+0.7
1,424,496	+		GFF1397	0.32	+0.0
1,424,496	+		GFF1397	0.32	-0.7
1,424,502	+		GFF1397	0.32	-1.7
1,424,510	-		GFF1397	0.33	+0.5
1,424,510	-		GFF1397	0.33	-0.5
1,424,515	-		GFF1397	0.33	-1.4
1,424,555	+		GFF1397	0.37	-1.3
1,424,563	-		GFF1397	0.38	-0.7
1,424,563	-		GFF1397	0.38	-0.6
1,424,567	+		GFF1397	0.38	-1.2
1,424,613	-		GFF1397	0.43	+1.2
1,424,625	-		GFF1397	0.44	-1.5
1,424,629	+		GFF1397	0.44	-1.1
1,424,634	+		GFF1397	0.45	-0.5
1,424,634	+		GFF1397	0.45	-0.9
1,424,634	+		GFF1397	0.45	-0.3
1,424,634	+		GFF1397	0.45	-1.2
1,424,642	-		GFF1397	0.46	-0.3
1,424,642	-		GFF1397	0.46	-0.4
1,424,642	-		GFF1397	0.46	-0.5
1,424,642	-		GFF1397	0.46	+0.5
1,424,659	-		GFF1397	0.47	-0.7
1,424,661	+		GFF1397	0.47	-0.6
1,424,680	+		GFF1397	0.49	-0.3
1,424,721	+		GFF1397	0.53	-1.4
1,424,736	+		GFF1397	0.55	+0.6
1,424,736	+		GFF1397	0.55	-1.0
1,424,738	+		GFF1397	0.55	+0.7
1,424,744	-		GFF1397	0.55	+0.1
1,424,746	-		GFF1397	0.56	+0.7
1,424,747	-		GFF1397	0.56	-1.3
1,424,753	-		GFF1397	0.56	-1.8
1,424,754	-		GFF1397	0.56	+1.7
1,424,774	+		GFF1397	0.58	-0.7
1,424,774	+		GFF1397	0.58	+0.6
1,424,774	+		GFF1397	0.58	-0.9
1,424,774	+		GFF1397	0.58	-1.5
1,424,774	+		GFF1397	0.58	-1.1
1,424,775	+		GFF1397	0.58	-1.6
1,424,776	-		GFF1397	0.58	+0.0
1,424,780	+		GFF1397	0.59	-0.8
1,424,782	-		GFF1397	0.59	+0.3
1,424,782	-		GFF1397	0.59	-0.2
1,424,800	-		GFF1397	0.61	-0.8
1,424,818	+		GFF1397	0.62	-1.1
1,424,851	+		GFF1397	0.66	+1.2
1,424,866	+		GFF1397	0.67	-1.7
1,424,875	+		GFF1397	0.68	-0.3
1,424,880	+		GFF1397	0.68	-1.1
1,424,893	+		GFF1397	0.70	-0.9
1,424,898	+		GFF1397	0.70	+0.1
1,424,903	+		GFF1397	0.71	-0.3
1,424,951	+		GFF1397	0.75	+0.2
1,424,958	+		GFF1397	0.76	-1.9
1,424,958	+		GFF1397	0.76	+0.7
1,424,965	-		GFF1397	0.77	-1.8
1,424,966	-		GFF1397	0.77	+0.7
1,424,978	+		GFF1397	0.78	-0.3
1,425,000	-		GFF1397	0.80	-1.4
1,425,035	-		GFF1397	0.83	-0.8
1,425,047	-		GFF1397	0.84	-1.1
1,425,081	+		GFF1397	0.88	+0.9
1,425,088	+		GFF1397	0.88	+0.6
1,425,089	-		GFF1397	0.88	-0.5
1,425,091	+		GFF1397	0.89	+1.2
1,425,091	-		GFF1397	0.89	-1.3
1,425,097	+		GFF1397	0.89	-2.6
1,425,099	-		GFF1397	0.89	-1.2
1,425,099	-		GFF1397	0.89	-2.1
1,425,099	-		GFF1397	0.89	+1.7
1,425,102	+		GFF1397	0.90	-0.3
1,425,102	+		GFF1397	0.90	+0.2
1,425,105	-				-0.9
1,425,110	-				-0.5
1,425,117	+				-1.2
1,425,118	+				+0.2
1,425,121	+				-0.7
1,425,121	+				-1.1
1,425,121	+				-0.4
1,425,121	+				-0.9
1,425,123	+				+0.3
1,425,123	+				-0.1
1,425,123	+				-1.6
1,425,125	-				-0.3
1,425,125	-				-1.8
1,425,129	-				-0.2
1,425,131	-				+1.3
1,425,131	-				+2.7
1,425,135	-				-0.3
1,425,142	+				-0.5
1,425,142	+				+0.6
1,425,142	+				+1.3
1,425,142	+				-0.3
1,425,142	+				-0.6
1,425,142	+				+0.2
1,425,150	-				+0.5
1,425,150	-				-0.9
1,425,150	-				+0.2
1,425,150	-				-0.4
1,425,150	-				+0.5
1,425,157	+				-0.3
1,425,165	-				-1.5
1,425,171	-				+1.9
1,425,224	-				-0.3
1,425,228	+				-0.6
1,425,236	-				-0.7
1,425,238	+				-0.5
1,425,238	+				-0.3
1,425,238	+				+0.6
1,425,238	+				-1.4
1,425,246	-				-1.2
1,425,246	-				+0.2
1,425,246	-				-0.8
1,425,246	-				+0.5
1,425,246	-				+0.3
1,425,246	-				-2.6
1,425,246	-				-1.2
1,425,246	-				-1.8
1,425,246	-				+0.2
1,425,246	-				+0.5
1,425,282	+		GFF1398	0.15	-0.3
1,425,294	-		GFF1398	0.22	+0.3
1,425,332	+		GFF1398	0.42	+0.7
1,425,332	+		GFF1398	0.42	-1.0
1,425,332	+		GFF1398	0.42	-2.1
1,425,332	+		GFF1398	0.42	+0.7
1,425,340	-		GFF1398	0.46	-0.4
1,425,340	-		GFF1398	0.46	-0.7
1,425,408	+		GFF1398	0.82	-2.5
1,425,415	+		GFF1398	0.86	-1.2
1,425,416	-		GFF1398	0.86	-2.3
1,425,423	-				-0.7
1,425,430	+				-0.5
1,425,430	+				-0.5
1,425,435	+				-0.5
1,425,436	+				-0.5
1,425,438	-				-0.8
1,425,438	-				-0.9
1,425,442	+				-1.6
1,425,443	-				-1.8
1,425,443	-				-1.3
1,425,445	-				-1.1
1,425,448	-				+0.4
1,425,448	-				+0.4
1,425,450	-				+0.1
1,425,450	-				-0.4
1,425,450	-				-0.5
1,425,452	+				-1.2
1,425,460	-				+0.7
1,425,460	-				-1.8
1,425,460	-				+0.6
1,425,462	+				-1.8
1,425,470	-				-1.7
1,425,483	+				-0.7
1,425,483	+				-0.5
1,425,483	+				-0.8
1,425,483	+				-0.8
1,425,483	+				-1.2
1,425,485	+				-0.2
1,425,488	+				-1.1
1,425,488	+				+0.7
1,425,488	+				+0.2
1,425,488	+				-0.1
1,425,488	+				-1.8
1,425,488	+				-0.5
1,425,489	-				+0.2
1,425,491	-				+0.4
1,425,491	-				+0.4
1,425,491	-				-1.3
1,425,491	-				-1.2
1,425,491	-				+0.3
1,425,491	-				-0.7
1,425,496	-				-2.6
1,425,496	-				-0.8
1,425,513	-				-0.4
1,425,530	+				-1.5
1,425,535	+				-1.2
1,425,535	+				-0.4
1,425,543	-				+0.4
1,425,543	-				+0.9
1,425,543	-				-0.1
1,425,550	-				-1.5
1,425,575	+		GFF1399	0.11	-1.4
1,425,578	-		GFF1399	0.12	-0.4
1,425,579	-		GFF1399	0.12	+1.1
1,425,580	+		GFF1399	0.12	-1.5
1,425,580	+		GFF1399	0.12	+0.1
1,425,580	+		GFF1399	0.12	-0.4
1,425,580	+		GFF1399	0.12	-0.9
1,425,580	+		GFF1399	0.12	-1.4
1,425,580	+		GFF1399	0.12	-1.0
1,425,580	+		GFF1399	0.12	-0.3
1,425,588	-		GFF1399	0.13	+0.0
1,425,588	-		GFF1399	0.13	-1.3
1,425,588	-		GFF1399	0.13	-0.7
1,425,588	-		GFF1399	0.13	-1.1
1,425,588	-		GFF1399	0.13	-1.3
1,425,588	-		GFF1399	0.13	+0.6
1,425,588	-		GFF1399	0.13	+0.5
1,425,588	-		GFF1399	0.13	-2.0
1,425,591	+		GFF1399	0.13	-0.8
1,425,599	-		GFF1399	0.14	-2.0
1,425,599	-		GFF1399	0.14	-1.1
1,425,599	-		GFF1399	0.14	-0.3
1,425,615	+		GFF1399	0.16	-2.1
1,425,623	-		GFF1399	0.16	-1.4
1,425,649	-		GFF1399	0.19	-0.5
1,425,649	-		GFF1399	0.19	-1.5
1,425,649	-		GFF1399	0.19	-0.9
1,425,649	-		GFF1399	0.19	-0.5
1,425,657	-		GFF1399	0.20	-0.6
1,425,675	+		GFF1399	0.22	-1.8
1,425,675	+		GFF1399	0.22	-1.2
1,425,675	+		GFF1399	0.22	-0.8
1,425,675	+		GFF1399	0.22	-1.4
1,425,675	+		GFF1399	0.22	+1.6
1,425,683	-		GFF1399	0.23	-2.0
1,425,683	-		GFF1399	0.23	-0.6
1,425,683	-		GFF1399	0.23	-0.6
1,425,683	-		GFF1399	0.23	-0.1
1,425,683	-		GFF1399	0.23	-0.8
1,425,683	-		GFF1399	0.23	-0.3
1,425,683	-		GFF1399	0.23	-0.6
1,425,689	-		GFF1399	0.23	+0.6
1,425,691	+		GFF1399	0.23	+0.9
1,425,698	-		GFF1399	0.24	-0.8
1,425,733	+		GFF1399	0.28	-1.5
1,425,743	+		GFF1399	0.29	+0.4
1,425,750	+		GFF1399	0.30	-0.1
1,425,750	+		GFF1399	0.30	-1.3
1,425,750	+		GFF1399	0.30	+0.5
1,425,754	+		GFF1399	0.30	-0.7
1,425,757	-		GFF1399	0.30	+0.0
1,425,758	-		GFF1399	0.30	-1.4
1,425,762	-		GFF1399	0.31	-0.6
1,425,779	+		GFF1399	0.33	-0.9
1,425,779	+		GFF1399	0.33	-0.5
1,425,779	+		GFF1399	0.33	-2.0
1,425,782	-		GFF1399	0.33	-0.3
1,425,784	+		GFF1399	0.33	+0.4
1,425,784	+		GFF1399	0.33	-1.2
1,425,787	-		GFF1399	0.33	-1.1
1,425,792	-		GFF1399	0.34	-0.1
1,425,792	-		GFF1399	0.34	+0.7
1,425,819	-		GFF1399	0.37	+1.0
1,425,855	+		GFF1399	0.40	+0.6
1,425,855	+		GFF1399	0.40	-0.9
1,425,863	-		GFF1399	0.41	+1.5
1,425,863	-		GFF1399	0.41	+0.6
1,425,863	-		GFF1399	0.41	+0.1
1,425,867	+		GFF1399	0.42	-0.3
1,425,886	-		GFF1399	0.44	-0.4
1,425,907	+		GFF1399	0.46	-0.4
1,425,915	-		GFF1399	0.47	-1.3
1,425,933	+		GFF1399	0.49	-1.0
1,425,951	+		GFF1399	0.50	+1.6
1,425,951	+		GFF1399	0.50	+1.6
1,425,956	-		GFF1399	0.51	-1.7
1,425,959	-		GFF1399	0.51	-0.3
1,425,959	-		GFF1399	0.51	-0.3
1,425,959	-		GFF1399	0.51	-0.1
1,425,959	-		GFF1399	0.51	-1.4
1,425,959	-		GFF1399	0.51	-1.1
1,425,982	+		GFF1399	0.54	-1.0
1,425,982	+		GFF1399	0.54	-0.8
1,425,982	+		GFF1399	0.54	-0.4
1,425,990	-		GFF1399	0.54	-0.8
1,425,990	-		GFF1399	0.54	+2.0
1,425,990	-		GFF1399	0.54	+0.7
1,425,990	-		GFF1399	0.54	+0.6
1,425,990	-		GFF1399	0.54	+0.4
1,425,990	-		GFF1399	0.54	-1.3
1,425,990	-		GFF1399	0.54	-0.8
1,426,001	+		GFF1399	0.56	-0.9
1,426,001	+		GFF1399	0.56	+2.5
1,426,007	-		GFF1399	0.56	-0.4
1,426,034	-		GFF1399	0.59	-1.3
1,426,041	+		GFF1399	0.60	-0.1
1,426,045	+		GFF1399	0.60	+1.0
1,426,049	-		GFF1399	0.61	-0.1
1,426,055	+		GFF1399	0.61	-0.1
1,426,063	-		GFF1399	0.62	+1.5
1,426,063	-		GFF1399	0.62	+0.6
1,426,068	+		GFF1399	0.63	-0.3
1,426,068	+		GFF1399	0.63	-0.3
1,426,078	+		GFF1399	0.64	-1.1
1,426,086	-		GFF1399	0.64	-1.5
1,426,097	+		GFF1399	0.66	+0.2
1,426,103	+		GFF1399	0.66	+0.2
1,426,104	-		GFF1399	0.66	-0.8
1,426,105	-		GFF1399	0.66	+0.2
1,426,105	-		GFF1399	0.66	-2.1
1,426,109	-		GFF1399	0.67	-1.6
1,426,117	+		GFF1399	0.68	-0.2
1,426,127	+		GFF1399	0.69	-0.2
1,426,161	-		GFF1399	0.72	+0.7
1,426,164	-		GFF1399	0.72	-0.6
1,426,219	-		GFF1399	0.78	+1.1
1,426,235	+		GFF1399	0.80	+0.3
1,426,235	+		GFF1399	0.80	-0.8
1,426,235	+		GFF1399	0.80	-0.3
1,426,235	+		GFF1399	0.80	+0.7
1,426,243	-		GFF1399	0.81	-0.4
1,426,268	+		GFF1399	0.83	+1.1
1,426,268	+		GFF1399	0.83	-0.7
1,426,268	+		GFF1399	0.83	-0.7
1,426,276	-		GFF1399	0.84	-1.1
1,426,276	-		GFF1399	0.84	-1.8
1,426,276	-		GFF1399	0.84	-2.3
1,426,276	-		GFF1399	0.84	+0.7
1,426,276	-		GFF1399	0.84	-0.4
1,426,276	-		GFF1399	0.84	-1.7
1,426,296	-		GFF1399	0.86	-0.1
1,426,324	-		GFF1399	0.89	-1.4
1,426,350	-				+1.0
1,426,350	-				+0.7
1,426,350	-				+2.1
1,426,352	+				+0.7
1,426,352	+				-1.8
1,426,352	+				-0.4
1,426,360	-				-0.8
1,426,360	-				-0.6
1,426,384	+				-0.7
1,426,394	-				-1.6
1,426,420	-				+0.8
1,426,420	-				-0.6