Strain Fitness in Sphingobium sp. HT1-2 around GFF1267

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,295,515	+		GFF1266	0.37	-1.4
1,295,523	+		GFF1266	0.37	-1.3
1,295,523	-		GFF1266	0.37	-0.8
1,295,530	-		GFF1266	0.38	-1.3
1,295,537	-		GFF1266	0.38	+0.9
1,295,539	+		GFF1266	0.38	+0.5
1,295,546	+		GFF1266	0.39	-1.0
1,295,546	+		GFF1266	0.39	-0.9
1,295,546	+		GFF1266	0.39	+0.4
1,295,547	-		GFF1266	0.39	-0.3
1,295,561	+		GFF1266	0.40	+1.3
1,295,561	+		GFF1266	0.40	-1.1
1,295,564	-		GFF1266	0.40	-1.8
1,295,564	-		GFF1266	0.40	-0.7
1,295,564	-		GFF1266	0.40	+0.0
1,295,569	-		GFF1266	0.41	-0.6
1,295,569	-		GFF1266	0.41	-1.1
1,295,588	-		GFF1266	0.42	+0.8
1,295,601	-		GFF1266	0.43	-1.7
1,295,609	+		GFF1266	0.43	-1.0
1,295,613	-		GFF1266	0.44	-1.6
1,295,614	-		GFF1266	0.44	+0.8
1,295,634	+		GFF1266	0.45	-0.4
1,295,654	+		GFF1266	0.47	-0.4
1,295,654	+		GFF1266	0.47	-1.2
1,295,654	+		GFF1266	0.47	-1.8
1,295,662	-		GFF1266	0.47	-2.1
1,295,662	-		GFF1266	0.47	-0.5
1,295,662	-		GFF1266	0.47	+0.4
1,295,662	-		GFF1266	0.47	-0.9
1,295,672	+		GFF1266	0.48	-0.0
1,295,673	+		GFF1266	0.48	-2.2
1,295,722	+		GFF1266	0.51	-0.6
1,295,722	+		GFF1266	0.51	+0.3
1,295,722	+		GFF1266	0.51	-0.5
1,295,722	+		GFF1266	0.51	-1.6
1,295,722	+		GFF1266	0.51	+0.6
1,295,722	+		GFF1266	0.51	+0.3
1,295,722	+		GFF1266	0.51	-1.9
1,295,722	+		GFF1266	0.51	+0.4
1,295,722	+		GFF1266	0.51	+0.3
1,295,730	-		GFF1266	0.52	+0.5
1,295,730	-		GFF1266	0.52	+0.4
1,295,730	-		GFF1266	0.52	-1.0
1,295,730	-		GFF1266	0.52	-1.6
1,295,730	-		GFF1266	0.52	-1.3
1,295,730	-		GFF1266	0.52	-1.1
1,295,730	-		GFF1266	0.52	-1.0
1,295,730	-		GFF1266	0.52	-0.2
1,295,730	-		GFF1266	0.52	+0.7
1,295,730	-		GFF1266	0.52	+0.6
1,295,730	-		GFF1266	0.52	-0.6
1,295,730	-		GFF1266	0.52	-0.0
1,295,740	-		GFF1266	0.53	-0.4
1,295,740	-		GFF1266	0.53	+1.4
1,295,758	+		GFF1266	0.54	+1.4
1,295,763	+		GFF1266	0.54	-0.6
1,295,771	-		GFF1266	0.55	-0.1
1,295,771	-		GFF1266	0.55	+0.0
1,295,771	-		GFF1266	0.55	-0.5
1,295,771	-		GFF1266	0.55	-0.4
1,295,771	-		GFF1266	0.55	-1.6
1,295,773	+		GFF1266	0.55	+0.1
1,295,809	+		GFF1266	0.58	-1.0
1,295,809	+		GFF1266	0.58	-1.4
1,295,809	+		GFF1266	0.58	-0.2
1,295,809	+		GFF1266	0.58	-0.8
1,295,809	+		GFF1266	0.58	-0.6
1,295,809	+		GFF1266	0.58	-0.5
1,295,809	+		GFF1266	0.58	-0.1
1,295,814	+		GFF1266	0.58	-0.9
1,295,814	+		GFF1266	0.58	+0.6
1,295,814	+		GFF1266	0.58	+1.3
1,295,817	-		GFF1266	0.58	-0.9
1,295,817	-		GFF1266	0.58	-1.1
1,295,817	-		GFF1266	0.58	-0.9
1,295,817	-		GFF1266	0.58	-0.6
1,295,817	-		GFF1266	0.58	+0.7
1,295,817	-		GFF1266	0.58	-0.3
1,295,822	-		GFF1266	0.59	-0.5
1,295,822	-		GFF1266	0.59	+0.1
1,295,822	-		GFF1266	0.59	-2.5
1,295,822	-		GFF1266	0.59	-0.6
1,295,854	-		GFF1266	0.61	+0.7
1,295,856	+		GFF1266	0.61	+0.5
1,295,866	+		GFF1266	0.62	-0.3
1,295,876	+		GFF1266	0.63	+0.7
1,295,884	-		GFF1266	0.63	-0.3
1,295,884	-		GFF1266	0.63	+0.7
1,295,889	-		GFF1266	0.63	+1.0
1,295,891	+		GFF1266	0.64	+1.2
1,295,897	-		GFF1266	0.64	-0.9
1,295,921	+		GFF1266	0.66	-0.3
1,295,929	+		GFF1266	0.66	-0.9
1,295,929	-		GFF1266	0.66	-2.3
1,295,975	-		GFF1266	0.70	+0.4
1,296,014	-		GFF1266	0.72	-0.3
1,296,019	+		GFF1266	0.73	-0.9
1,296,021	+		GFF1266	0.73	-0.1
1,296,028	+		GFF1266	0.73	-0.8
1,296,036	-		GFF1266	0.74	-0.2
1,296,059	-		GFF1266	0.76	-1.3
1,296,059	-		GFF1266	0.76	-0.1
1,296,059	-		GFF1266	0.76	+0.7
1,296,059	-		GFF1266	0.76	-0.3
1,296,070	+		GFF1266	0.76	+0.9
1,296,075	+		GFF1266	0.77	-0.9
1,296,078	-		GFF1266	0.77	-2.1
1,296,080	+		GFF1266	0.77	+1.7
1,296,089	-		GFF1266	0.78	+0.1
1,296,112	-		GFF1266	0.79	+0.4
1,296,113	-		GFF1266	0.79	-0.5
1,296,144	+		GFF1266	0.82	+1.6
1,296,152	-		GFF1266	0.82	-0.1
1,296,191	-		GFF1266	0.85	-0.1
1,296,214	-		GFF1266	0.87	+1.3
1,296,221	+		GFF1266	0.87	-0.2
1,296,221	+		GFF1266	0.87	+1.9
1,296,223	+		GFF1266	0.87	-0.0
1,296,229	-		GFF1266	0.88	+0.2
1,296,239	-		GFF1266	0.89	-0.5
1,296,239	-		GFF1266	0.89	-0.0
1,296,264	+				-0.9
1,296,271	+				-0.7
1,296,297	-				-1.1
1,296,297	-				-0.0
1,296,299	+				-0.5
1,296,303	+				-0.9
1,296,311	-				-0.8
1,296,406	+				-0.5
1,296,428	-				-0.7
1,296,442	+				-0.9
1,296,443	-				-0.9
1,296,443	-				+1.4
1,296,454	+				-0.2
1,296,510	+				-0.9
1,296,555	+				+0.1
1,296,576	+				-0.6
1,296,613	+				+1.1
1,296,621	-				-1.7
1,296,635	-				+0.2
1,296,644	+				-1.3
1,296,659	+		GFF1267	0.11	-0.5
1,296,659	+		GFF1267	0.11	-0.8
1,296,662	-		GFF1267	0.11	-0.7
1,296,668	+		GFF1267	0.12	-0.5
1,296,668	+		GFF1267	0.12	-0.1
1,296,681	+		GFF1267	0.12	-0.1
1,296,681	-		GFF1267	0.12	-0.2
1,296,691	-		GFF1267	0.13	+0.9
1,296,698	-		GFF1267	0.14	+1.7
1,296,768	-		GFF1267	0.19	-1.1
1,296,781	+		GFF1267	0.20	-0.3
1,296,782	+		GFF1267	0.20	-0.1
1,296,789	-		GFF1267	0.21	-1.7
1,296,805	+		GFF1267	0.22	-2.7
1,296,805	+		GFF1267	0.22	-0.3
1,296,813	-		GFF1267	0.22	-2.4
1,296,818	-		GFF1267	0.23	-2.1
1,296,818	-		GFF1267	0.23	+1.5
1,296,820	+		GFF1267	0.23	-0.6
1,296,825	+		GFF1267	0.23	+1.8
1,296,825	+		GFF1267	0.23	-1.6
1,296,825	+		GFF1267	0.23	+0.6
1,296,833	-		GFF1267	0.24	-1.4
1,296,833	-		GFF1267	0.24	-0.3
1,296,833	-		GFF1267	0.24	-0.7
1,296,833	-		GFF1267	0.24	-0.2
1,296,835	+		GFF1267	0.24	-1.7
1,296,843	-		GFF1267	0.25	-1.1
1,296,843	-		GFF1267	0.25	-1.5
1,296,877	+		GFF1267	0.27	-0.6
1,296,885	-		GFF1267	0.28	-0.6
1,296,885	-		GFF1267	0.28	-1.0
1,296,891	+		GFF1267	0.28	-0.2
1,296,892	-		GFF1267	0.28	-0.7
1,296,892	-		GFF1267	0.28	-0.3
1,296,899	-		GFF1267	0.29	-0.7
1,296,905	-		GFF1267	0.29	+0.2
1,296,907	+		GFF1267	0.29	-1.1
1,296,913	+		GFF1267	0.30	-2.7
1,296,913	+		GFF1267	0.30	+1.2
1,296,913	+		GFF1267	0.30	-0.9
1,296,918	+		GFF1267	0.30	-0.7
1,296,918	+		GFF1267	0.30	-0.3
1,296,918	+		GFF1267	0.30	-0.8
1,296,921	-		GFF1267	0.30	+1.0
1,296,921	-		GFF1267	0.30	-0.6
1,296,921	-		GFF1267	0.30	-0.7
1,296,926	-		GFF1267	0.31	-0.6
1,296,926	-		GFF1267	0.31	-0.1
1,296,926	-		GFF1267	0.31	-0.1
1,296,934	-		GFF1267	0.31	-0.8
1,296,939	-		GFF1267	0.32	+0.7
1,296,996	+		GFF1267	0.36	-0.1
1,296,997	+		GFF1267	0.36	+1.4
1,297,000	-		GFF1267	0.36	-1.5
1,297,005	-		GFF1267	0.37	-0.9
1,297,036	+		GFF1267	0.39	-1.5
1,297,036	+		GFF1267	0.39	-1.9
1,297,036	+		GFF1267	0.39	-0.0
1,297,036	+		GFF1267	0.39	-1.7
1,297,044	-		GFF1267	0.40	-1.1
1,297,044	-		GFF1267	0.40	+0.5
1,297,044	-		GFF1267	0.40	-0.6
1,297,044	-		GFF1267	0.40	-1.7
1,297,044	-		GFF1267	0.40	-0.9
1,297,046	+		GFF1267	0.40	+0.2
1,297,046	+		GFF1267	0.40	-1.6
1,297,046	+		GFF1267	0.40	-0.4
1,297,046	+		GFF1267	0.40	-1.2
1,297,054	-		GFF1267	0.40	-0.1
1,297,054	-		GFF1267	0.40	+0.5
1,297,054	-		GFF1267	0.40	-0.3
1,297,127	+		GFF1267	0.46	-1.6
1,297,154	+		GFF1267	0.48	-0.8
1,297,154	+		GFF1267	0.48	+0.9
1,297,194	+		GFF1267	0.51	-0.5
1,297,234	+		GFF1267	0.54	-1.1
1,297,242	-		GFF1267	0.54	-0.7
1,297,264	+		GFF1267	0.56	-0.6
1,297,264	+		GFF1267	0.56	-1.5
1,297,272	-		GFF1267	0.56	-0.6
1,297,272	-		GFF1267	0.56	-0.9
1,297,272	-		GFF1267	0.56	-0.1
1,297,283	+		GFF1267	0.57	+0.7
1,297,283	+		GFF1267	0.57	+1.1
1,297,291	-		GFF1267	0.58	+0.3
1,297,295	-		GFF1267	0.58	+0.3
1,297,297	+		GFF1267	0.58	-0.3
1,297,300	+		GFF1267	0.59	-1.1
1,297,305	-		GFF1267	0.59	+0.8
1,297,308	-		GFF1267	0.59	-1.4
1,297,308	-		GFF1267	0.59	+0.3
1,297,319	-		GFF1267	0.60	-0.4
1,297,344	+		GFF1267	0.62	-0.1
1,297,352	-		GFF1267	0.62	+0.3
1,297,368	+		GFF1267	0.64	-0.4
1,297,391	-		GFF1267	0.65	-0.3
1,297,512	+		GFF1267	0.74	-1.5
1,297,527	-		GFF1267	0.75	+0.4
1,297,540	-		GFF1267	0.76	+0.4
1,297,557	-		GFF1267	0.78	+0.7
1,297,557	-		GFF1267	0.78	-1.3
1,297,558	+		GFF1267	0.78	+1.4
1,297,563	+		GFF1267	0.78	-0.7
1,297,595	+		GFF1267	0.81	-1.7
1,297,597	+		GFF1267	0.81	-0.9
1,297,600	-		GFF1267	0.81	-0.3
1,297,660	+		GFF1267	0.85	+0.5
1,297,665	+		GFF1267	0.86	+1.3
1,297,670	-		GFF1267	0.86	+0.7
1,297,670	-		GFF1267	0.86	+0.7
1,297,675	+		GFF1267	0.86	+1.0
1,297,676	+		GFF1267	0.87	+0.4
1,297,676	+		GFF1267	0.87	-1.3
1,297,683	-		GFF1267	0.87	-1.3
1,297,684	-		GFF1267	0.87	+1.6
1,297,684	-		GFF1267	0.87	-0.9
1,297,714	-		GFF1267	0.89	-0.5
1,297,720	-		GFF1267	0.90	-1.1
1,297,760	+				-0.7
1,297,771	+				-1.1
1,297,796	-				-0.8
1,297,823	-				-0.8
1,297,824	+				+0.7
1,297,824	+				-0.8
1,297,828	-				-0.6
1,297,832	-				-0.3
1,297,832	-				-0.1
1,297,851	-				+0.6
1,297,877	+				-1.2
1,297,885	-				-1.8
1,297,886	+				-0.8
1,297,906	-				-0.0
1,297,917	+				+1.2
1,297,925	-				-0.1
1,297,925	-				-1.2
1,297,925	-				-0.7
1,297,925	-				-1.9
1,297,932	+				+0.1
1,297,935	-				+0.2
1,297,935	-				-2.3
1,297,935	-				+1.1
1,297,935	-				+0.3
1,297,942	-				-0.2
1,297,966	+				-2.1
1,297,966	+				+0.5
1,297,966	+				-1.1
1,297,974	-				+1.4
1,297,974	-				+1.2
1,297,991	+				-0.3
1,297,991	-				-0.1
1,297,999	-				-0.0
1,297,999	-				-0.8
1,297,999	-				+0.2
1,298,010	+				+1.0
1,298,018	-				-2.3
1,298,021	+				-1.2
1,298,052	+				-0.4
1,298,060	-				-0.9
1,298,060	-				+0.5
1,298,062	+				-2.2
1,298,074	+				-1.3
1,298,093	-				-0.3
1,298,104	+				-1.7
1,298,105	+				+0.4
1,298,112	-				+0.7
1,298,113	-				-1.3
1,298,141	+				-0.0
1,298,184	-				+0.7
1,298,189	-				-1.3
1,298,234	+		GFF1268	0.16	-0.3
1,298,237	-		GFF1268	0.17	-0.5
1,298,253	-		GFF1268	0.22	+0.5
1,298,253	-		GFF1268	0.22	-1.9
1,298,266	+		GFF1268	0.25	-1.0
1,298,266	+		GFF1268	0.25	-1.1
1,298,266	+		GFF1268	0.25	-1.5
1,298,274	-		GFF1268	0.28	-0.9
1,298,274	-		GFF1268	0.28	+1.6
1,298,281	+		GFF1268	0.30	-0.8
1,298,293	+		GFF1268	0.33	-1.3
1,298,293	+		GFF1268	0.33	+0.4
1,298,335	-		GFF1268	0.45	-1.4
1,298,339	+		GFF1268	0.46	+0.4
1,298,344	-		GFF1268	0.48	-0.1
1,298,373	+		GFF1268	0.56	-0.7
1,298,383	+		GFF1268	0.59	+0.9
1,298,385	-		GFF1268	0.59	+0.5
1,298,461	-		GFF1268	0.81	-0.1
1,298,467	+		GFF1268	0.83	-1.0
1,298,467	+		GFF1268	0.83	-1.4
1,298,467	+		GFF1268	0.83	+0.7
1,298,467	+		GFF1268	0.83	-0.9
1,298,475	-		GFF1268	0.85	-0.5
1,298,510	+				-0.4
1,298,510	+				-1.1
1,298,531	-				-0.7
1,298,531	-				+0.1
1,298,531	-				-2.4
1,298,531	-				+0.6
1,298,531	-				-0.8
1,298,541	+				+0.1
1,298,541	+				-1.4
1,298,542	+				-0.4
1,298,542	+				-1.5
1,298,549	-				-1.4
1,298,549	-				-0.6
1,298,549	-				-2.0
1,298,550	-				-0.7
1,298,550	-				+0.2
1,298,572	+				-0.1
1,298,572	+				-1.5
1,298,621	+		GFF1269	0.13	-0.3
1,298,628	+		GFF1269	0.14	+0.1
1,298,629	-		GFF1269	0.15	+0.3
1,298,636	-		GFF1269	0.15	+1.9
1,298,674	+		GFF1269	0.21	-0.9
1,298,679	+		GFF1269	0.21	-0.5
1,298,682	-		GFF1269	0.22	-2.1
1,298,682	-		GFF1269	0.22	-1.0
1,298,682	-		GFF1269	0.22	-1.1
1,298,719	-		GFF1269	0.27	+0.4