Strain Fitness in Sphingobium sp. HT1-2 around GFF1222

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,247,514	-		GFF1221	0.18	+0.9
1,247,567	+		GFF1221	0.23	-1.1
1,247,570	-		GFF1221	0.23	-0.6
1,247,608	-		GFF1221	0.26	-0.4
1,247,636	-		GFF1221	0.28	-2.1
1,247,647	+		GFF1221	0.29	-0.6
1,247,647	+		GFF1221	0.29	-0.6
1,247,647	+		GFF1221	0.29	-1.0
1,247,647	+		GFF1221	0.29	+0.9
1,247,647	+		GFF1221	0.29	-1.6
1,247,655	-		GFF1221	0.30	+0.7
1,247,655	-		GFF1221	0.30	-1.5
1,247,655	-		GFF1221	0.30	+0.4
1,247,655	-		GFF1221	0.30	-0.7
1,247,655	-		GFF1221	0.30	+0.3
1,247,655	-		GFF1221	0.30	+0.0
1,247,716	+		GFF1221	0.35	-0.8
1,247,719	-		GFF1221	0.35	-1.2
1,247,724	-		GFF1221	0.36	-0.3
1,247,736	+		GFF1221	0.37	-1.7
1,247,739	-		GFF1221	0.37	-1.1
1,247,740	+		GFF1221	0.37	-0.4
1,247,745	+		GFF1221	0.38	+0.3
1,247,745	-		GFF1221	0.38	+1.4
1,247,753	-		GFF1221	0.38	+0.5
1,247,758	-		GFF1221	0.39	-0.2
1,247,804	+		GFF1221	0.43	-0.3
1,247,818	+		GFF1221	0.44	-1.1
1,247,820	+		GFF1221	0.44	-0.2
1,247,820	+		GFF1221	0.44	-0.3
1,247,820	+		GFF1221	0.44	-0.3
1,247,828	-		GFF1221	0.45	+0.8
1,247,828	-		GFF1221	0.45	-0.7
1,247,828	-		GFF1221	0.45	+0.8
1,247,828	-		GFF1221	0.45	-1.0
1,247,828	-		GFF1221	0.45	-0.2
1,247,828	-		GFF1221	0.45	+1.3
1,247,828	-		GFF1221	0.45	+0.6
1,247,828	-		GFF1221	0.45	+0.2
1,247,828	-		GFF1221	0.45	-0.2
1,247,840	+		GFF1221	0.46	-0.8
1,247,848	-		GFF1221	0.46	-0.8
1,247,869	-		GFF1221	0.48	-0.0
1,247,872	+		GFF1221	0.49	-1.2
1,247,872	+		GFF1221	0.49	-1.1
1,247,872	+		GFF1221	0.49	+0.3
1,247,873	+		GFF1221	0.49	+0.4
1,247,880	-		GFF1221	0.49	-1.1
1,247,890	+		GFF1221	0.50	-2.0
1,247,924	+		GFF1221	0.53	+0.7
1,247,940	+		GFF1221	0.54	-0.3
1,247,945	+		GFF1221	0.55	+1.1
1,247,948	-		GFF1221	0.55	-0.9
1,247,965	+		GFF1221	0.56	+0.0
1,248,011	+		GFF1221	0.60	-0.7
1,248,011	+		GFF1221	0.60	-0.8
1,248,018	+		GFF1221	0.61	+0.4
1,248,018	+		GFF1221	0.61	-1.2
1,248,036	-		GFF1221	0.62	+0.7
1,248,036	-		GFF1221	0.62	-0.7
1,248,057	+		GFF1221	0.64	-0.4
1,248,084	-		GFF1221	0.67	-2.6
1,248,086	+		GFF1221	0.67	+0.2
1,248,134	-		GFF1221	0.71	-0.8
1,248,149	-		GFF1221	0.72	-0.8
1,248,149	-		GFF1221	0.72	+0.6
1,248,153	-		GFF1221	0.72	+1.8
1,248,172	+		GFF1221	0.74	-2.1
1,248,180	-		GFF1221	0.75	-1.3
1,248,190	-		GFF1221	0.76	-1.5
1,248,190	-		GFF1221	0.76	-1.3
1,248,249	-		GFF1221	0.81	-0.0
1,248,255	+		GFF1221	0.81	+0.4
1,248,271	+		GFF1221	0.83	-0.5
1,248,278	+		GFF1221	0.83	-2.0
1,248,278	+		GFF1221	0.83	+1.3
1,248,278	+		GFF1221	0.83	-1.0
1,248,278	+		GFF1221	0.83	+0.1
1,248,278	+		GFF1221	0.83	+0.0
1,248,278	+		GFF1221	0.83	-0.2
1,248,278	+		GFF1221	0.83	-1.0
1,248,278	+		GFF1221	0.83	-0.4
1,248,286	-		GFF1221	0.84	+0.5
1,248,286	-		GFF1221	0.84	-0.4
1,248,286	-		GFF1221	0.84	+1.3
1,248,286	-		GFF1221	0.84	-0.6
1,248,295	+		GFF1221	0.85	-1.1
1,248,308	-		GFF1221	0.86	+0.1
1,248,333	+		GFF1221	0.88	-1.5
1,248,341	-		GFF1221	0.88	-0.2
1,248,343	+		GFF1221	0.89	-1.3
1,248,343	+		GFF1221	0.89	-0.0
1,248,343	+		GFF1221	0.89	-0.8
1,248,343	+		GFF1221	0.89	-1.3
1,248,343	+		GFF1221	0.89	-0.2
1,248,348	+		GFF1221	0.89	+0.6
1,248,351	-		GFF1221	0.89	-0.2
1,248,351	-		GFF1221	0.89	-0.7
1,248,361	+				-0.3
1,248,361	+				-0.9
1,248,397	+				-1.0
1,248,408	+				-1.6
1,248,418	+				-0.7
1,248,422	-				+1.2
1,248,442	-				-1.9
1,248,445	+				+1.2
1,248,445	+				+0.1
1,248,445	+				+0.8
1,248,455	+				-0.3
1,248,455	+				-0.7
1,248,455	+				-0.4
1,248,455	+				-1.5
1,248,463	+				-1.1
1,248,463	-				-1.3
1,248,463	-				+0.3
1,248,463	-				-0.8
1,248,463	-				+0.1
1,248,465	+				+0.0
1,248,477	+				-0.7
1,248,477	+				+1.1
1,248,483	-				-0.7
1,248,483	-				+0.2
1,248,528	+		GFF1222	0.17	+0.3
1,248,539	+		GFF1222	0.23	-0.6
1,248,539	+		GFF1222	0.23	-0.7
1,248,539	+		GFF1222	0.23	-1.3
1,248,547	-		GFF1222	0.27	-1.5
1,248,547	-		GFF1222	0.27	-1.0
1,248,547	-		GFF1222	0.27	-0.5
1,248,547	-		GFF1222	0.27	-0.5
1,248,547	-		GFF1222	0.27	-0.8
1,248,557	-		GFF1222	0.32	-2.1
1,248,569	-		GFF1222	0.39	-1.9
1,248,571	+		GFF1222	0.40	-1.5
1,248,571	+		GFF1222	0.40	-0.3
1,248,641	-		GFF1222	0.77	+0.8
1,248,651	-		GFF1222	0.83	-1.9
1,248,651	-		GFF1222	0.83	-0.5
1,248,651	-		GFF1222	0.83	-0.8
1,248,651	-		GFF1222	0.83	-0.3
1,248,654	+		GFF1222	0.84	-0.7
1,248,654	+		GFF1222	0.84	+0.2
1,248,690	+				-1.1
1,248,716	-				-0.3
1,248,782	+				+0.2
1,248,782	+				-1.3
1,248,790	-				-0.7
1,248,792	+				-1.6
1,248,802	+				-0.8
1,248,808	+				+0.8
1,248,808	+				+0.2
1,248,815	+				-1.9
1,248,840	+				-0.0
1,248,840	+				-1.0
1,248,840	+				-0.5
1,248,848	-				+0.5
1,248,848	-				-0.4
1,248,873	+				-0.3
1,248,886	+				-1.5
1,248,940	-		GFF1223	0.11	+1.1
1,248,940	-		GFF1223	0.11	-0.3
1,248,940	-		GFF1223	0.11	-0.7
1,248,951	+		GFF1223	0.11	-0.5
1,248,956	+		GFF1223	0.12	-0.5
1,248,964	+		GFF1223	0.12	+0.2
1,248,967	-		GFF1223	0.12	-1.1
1,248,972	+		GFF1223	0.13	+0.2
1,248,972	-		GFF1223	0.13	+0.1
1,248,982	+		GFF1223	0.13	-1.0
1,248,982	+		GFF1223	0.13	-0.1
1,248,982	+		GFF1223	0.13	-0.6
1,248,990	-		GFF1223	0.14	+0.4
1,248,990	-		GFF1223	0.14	-0.6
1,248,990	-		GFF1223	0.14	-0.9
1,248,992	+		GFF1223	0.14	-1.9
1,248,997	+		GFF1223	0.14	-1.2
1,249,000	-		GFF1223	0.15	-1.4
1,249,000	-		GFF1223	0.15	-0.6
1,249,000	-		GFF1223	0.15	-1.4
1,249,015	-		GFF1223	0.15	+0.4
1,249,015	-		GFF1223	0.15	-1.0
1,249,017	+		GFF1223	0.16	-1.7
1,249,030	+		GFF1223	0.16	-0.5
1,249,035	+		GFF1223	0.17	+0.3
1,249,078	+		GFF1223	0.19	+1.1
1,249,086	-		GFF1223	0.20	-1.9
1,249,096	+		GFF1223	0.21	-0.4
1,249,099	-		GFF1223	0.21	-0.4
1,249,147	+		GFF1223	0.24	-1.5
1,249,155	-		GFF1223	0.24	-1.1
1,249,155	-		GFF1223	0.24	+0.3
1,249,155	-		GFF1223	0.24	+0.8
1,249,173	-		GFF1223	0.25	-1.0
1,249,177	+		GFF1223	0.26	-0.5
1,249,177	+		GFF1223	0.26	-0.8
1,249,177	+		GFF1223	0.26	-1.6
1,249,189	+		GFF1223	0.27	-2.1
1,249,204	-		GFF1223	0.27	+0.8
1,249,229	+		GFF1223	0.29	+0.3
1,249,229	+		GFF1223	0.29	+0.6
1,249,237	-		GFF1223	0.30	+0.5
1,249,237	-		GFF1223	0.30	-0.5
1,249,237	-		GFF1223	0.30	-1.8
1,249,270	-		GFF1223	0.32	-2.1
1,249,275	+		GFF1223	0.32	-2.0
1,249,310	-		GFF1223	0.34	+0.5
1,249,320	-		GFF1223	0.35	-2.1
1,249,331	+		GFF1223	0.35	-0.4
1,249,331	+		GFF1223	0.35	+0.6
1,249,337	+		GFF1223	0.36	-0.2
1,249,339	-		GFF1223	0.36	-0.3
1,249,339	-		GFF1223	0.36	-1.0
1,249,339	-		GFF1223	0.36	-1.5
1,249,342	+		GFF1223	0.36	-0.2
1,249,350	-		GFF1223	0.37	+0.0
1,249,361	+		GFF1223	0.37	-0.2
1,249,363	+		GFF1223	0.38	-1.4
1,249,363	+		GFF1223	0.38	+0.5
1,249,363	+		GFF1223	0.38	-0.9
1,249,363	+		GFF1223	0.38	+1.9
1,249,369	-		GFF1223	0.38	+0.7
1,249,371	-		GFF1223	0.38	-0.5
1,249,371	-		GFF1223	0.38	+0.7
1,249,419	-		GFF1223	0.41	+0.2
1,249,419	-		GFF1223	0.41	-0.4
1,249,432	+		GFF1223	0.42	-1.0
1,249,442	-		GFF1223	0.43	-1.5
1,249,478	+		GFF1223	0.45	-0.3
1,249,486	-		GFF1223	0.45	+0.2
1,249,486	-		GFF1223	0.45	-1.7
1,249,502	+		GFF1223	0.46	-0.9
1,249,522	+		GFF1223	0.48	+1.1
1,249,522	+		GFF1223	0.48	-1.3
1,249,528	+		GFF1223	0.48	+1.8
1,249,529	-		GFF1223	0.48	+0.8
1,249,530	-		GFF1223	0.48	-1.0
1,249,547	-		GFF1223	0.49	-0.7
1,249,557	-		GFF1223	0.50	-1.3
1,249,570	+		GFF1223	0.51	+0.4
1,249,594	+		GFF1223	0.52	-1.5
1,249,604	-		GFF1223	0.53	+0.8
1,249,641	-		GFF1223	0.55	-0.4
1,249,659	-		GFF1223	0.56	-0.7
1,249,669	+		GFF1223	0.57	-0.5
1,249,672	-		GFF1223	0.57	-0.4
1,249,677	-		GFF1223	0.57	-2.6