Strain Fitness in Sphingobium sp. HT1-2 around GFF1185

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,191,055	+		GFF1184	0.24	+0.6
1,191,064	-		GFF1184	0.25	-0.5
1,191,097	+		GFF1184	0.27	+1.5
1,191,097	+		GFF1184	0.27	-1.7
1,191,097	+		GFF1184	0.27	-0.8
1,191,100	-		GFF1184	0.28	-1.6
1,191,105	-		GFF1184	0.28	-1.1
1,191,105	-		GFF1184	0.28	+0.0
1,191,105	-		GFF1184	0.28	-1.4
1,191,105	-		GFF1184	0.28	-1.8
1,191,105	-		GFF1184	0.28	-0.4
1,191,121	+		GFF1184	0.29	-1.7
1,191,121	-		GFF1184	0.29	-1.0
1,191,129	+		GFF1184	0.30	-1.0
1,191,129	+		GFF1184	0.30	-2.5
1,191,137	-		GFF1184	0.31	-0.5
1,191,155	-		GFF1184	0.32	-0.1
1,191,210	-		GFF1184	0.37	-0.8
1,191,239	+		GFF1184	0.39	-0.4
1,191,244	+		GFF1184	0.40	+0.8
1,191,256	-		GFF1184	0.41	-0.4
1,191,278	+		GFF1184	0.42	-0.4
1,191,286	-		GFF1184	0.43	-0.5
1,191,302	+		GFF1184	0.44	-1.4
1,191,302	+		GFF1184	0.44	+0.1
1,191,307	+		GFF1184	0.45	-0.3
1,191,307	+		GFF1184	0.45	-0.6
1,191,307	+		GFF1184	0.45	-1.0
1,191,307	+		GFF1184	0.45	-2.0
1,191,308	-		GFF1184	0.45	+1.0
1,191,308	-		GFF1184	0.45	-1.9
1,191,310	-		GFF1184	0.45	-0.5
1,191,315	-		GFF1184	0.45	-1.0
1,191,315	-		GFF1184	0.45	-1.3
1,191,315	-		GFF1184	0.45	-0.6
1,191,315	-		GFF1184	0.45	-0.1
1,191,321	+		GFF1184	0.46	-0.7
1,191,321	+		GFF1184	0.46	-0.7
1,191,323	+		GFF1184	0.46	-0.4
1,191,323	+		GFF1184	0.46	-0.5
1,191,328	+		GFF1184	0.47	-0.4
1,191,328	+		GFF1184	0.47	-1.4
1,191,328	+		GFF1184	0.47	-0.5
1,191,329	-		GFF1184	0.47	-0.8
1,191,329	-		GFF1184	0.47	+0.0
1,191,329	-		GFF1184	0.47	-0.3
1,191,336	-		GFF1184	0.47	-1.5
1,191,336	-		GFF1184	0.47	-0.8
1,191,336	-		GFF1184	0.47	-0.9
1,191,336	-		GFF1184	0.47	-0.5
1,191,336	-		GFF1184	0.47	-0.2
1,191,336	-		GFF1184	0.47	-0.7
1,191,341	+		GFF1184	0.48	-0.1
1,191,349	-		GFF1184	0.48	-1.5
1,191,376	+		GFF1184	0.50	+0.7
1,191,376	+		GFF1184	0.50	-0.9
1,191,376	+		GFF1184	0.50	-0.1
1,191,382	+		GFF1184	0.51	-1.0
1,191,395	+		GFF1184	0.52	-0.4
1,191,395	+		GFF1184	0.52	-0.1
1,191,395	+		GFF1184	0.52	+0.2
1,191,395	+		GFF1184	0.52	-0.5
1,191,395	+		GFF1184	0.52	-0.7
1,191,395	+		GFF1184	0.52	-1.2
1,191,403	-		GFF1184	0.53	+0.2
1,191,403	-		GFF1184	0.53	+0.2
1,191,403	-		GFF1184	0.53	+0.5
1,191,403	-		GFF1184	0.53	-0.3
1,191,403	-		GFF1184	0.53	-2.0
1,191,403	-		GFF1184	0.53	-1.1
1,191,403	-		GFF1184	0.53	+0.3
1,191,449	+		GFF1184	0.57	-0.5
1,191,449	+		GFF1184	0.57	-0.9
1,191,449	+		GFF1184	0.57	-0.1
1,191,457	-		GFF1184	0.57	+1.0
1,191,457	-		GFF1184	0.57	-1.2
1,191,457	-		GFF1184	0.57	+0.1
1,191,457	-		GFF1184	0.57	-1.8
1,191,463	+		GFF1184	0.58	-1.2
1,191,463	+		GFF1184	0.58	+0.6
1,191,471	-		GFF1184	0.58	-1.2
1,191,488	+		GFF1184	0.60	-0.4
1,191,488	-		GFF1184	0.60	-0.1
1,191,496	-		GFF1184	0.60	+0.6
1,191,496	-		GFF1184	0.60	-0.5
1,191,496	-		GFF1184	0.60	-1.2
1,191,496	-		GFF1184	0.60	-0.2
1,191,518	+		GFF1184	0.62	+0.3
1,191,523	+		GFF1184	0.63	+1.1
1,191,526	-		GFF1184	0.63	-1.5
1,191,532	+		GFF1184	0.63	-1.2
1,191,550	+		GFF1184	0.65	-0.5
1,191,550	+		GFF1184	0.65	-1.9
1,191,550	+		GFF1184	0.65	+0.1
1,191,558	-		GFF1184	0.66	+2.1
1,191,558	-		GFF1184	0.66	+0.4
1,191,563	-		GFF1184	0.66	+0.5
1,191,579	+		GFF1184	0.67	-1.1
1,191,598	+		GFF1184	0.69	-0.3
1,191,606	-		GFF1184	0.70	+0.3
1,191,608	+		GFF1184	0.70	+0.3
1,191,610	+		GFF1184	0.70	+1.3
1,191,626	+		GFF1184	0.71	+0.2
1,191,632	+		GFF1184	0.72	-1.1
1,191,633	-		GFF1184	0.72	+2.3
1,191,638	-		GFF1184	0.72	-0.3
1,191,639	-		GFF1184	0.72	+0.0
1,191,662	+		GFF1184	0.74	-1.2
1,191,662	+		GFF1184	0.74	+1.9
1,191,670	-		GFF1184	0.75	-1.1
1,191,672	+		GFF1184	0.75	+0.6
1,191,689	+		GFF1184	0.76	+1.9
1,191,696	+		GFF1184	0.77	-1.2
1,191,706	+		GFF1184	0.78	-0.4
1,191,714	-		GFF1184	0.79	-0.2
1,191,739	+		GFF1184	0.81	-0.2
1,191,757	+		GFF1184	0.82	+0.7
1,191,760	-		GFF1184	0.82	-0.5
1,191,762	+		GFF1184	0.83	+0.7
1,191,763	-		GFF1184	0.83	-0.1
1,191,765	-		GFF1184	0.83	-1.2
1,191,781	-		GFF1184	0.84	+2.7
1,191,783	+		GFF1184	0.84	+0.7
1,191,814	+		GFF1184	0.87	+0.9
1,191,817	-		GFF1184	0.87	-1.2
1,191,822	-		GFF1184	0.87	-1.6
1,191,848	+		GFF1184	0.90	-0.9
1,191,848	+		GFF1184	0.90	+0.6
1,191,853	+				-0.2
1,191,853	+				-2.6
1,191,856	-				-0.4
1,191,856	-				+0.3
1,191,915	+				+0.8
1,191,915	-				-0.4
1,191,926	+				-1.4
1,191,926	+				-0.5
1,191,940	-				-0.0
1,191,992	+				-0.1
1,192,000	-				-0.6
1,192,012	+				-0.9
1,192,012	+				-0.3
1,192,015	+				-0.5
1,192,020	-				+0.6
1,192,023	-				-0.5
1,192,031	+				-2.0
1,192,041	+				-0.2
1,192,044	-				-0.2
1,192,046	+				-0.2
1,192,049	-				-0.4
1,192,059	-				-0.6
1,192,064	-				-1.1
1,192,066	+				+0.5
1,192,071	+				-1.5
1,192,071	+				-1.4
1,192,071	+				-0.7
1,192,079	-				+0.5
1,192,093	+				-0.2
1,192,093	+				-2.2
1,192,093	+				-0.4
1,192,093	+				-0.7
1,192,093	+				+1.4
1,192,093	+				-0.6
1,192,093	+				+0.3
1,192,093	+				-1.2
1,192,093	+				-1.0
1,192,093	+				-1.1
1,192,093	+				-0.7
1,192,093	+				+0.8
1,192,093	+				+0.3
1,192,096	-				-1.7
1,192,098	+				-0.7
1,192,098	+				-1.3
1,192,098	+				+0.5
1,192,101	-				-0.2
1,192,101	-				-2.2
1,192,101	-				-1.1
1,192,101	-				-0.2
1,192,101	-				+0.8
1,192,101	-				-0.3
1,192,101	-				-0.4
1,192,101	-				-0.4
1,192,101	-				-0.9
1,192,101	-				-0.4
1,192,101	-				-0.2
1,192,106	-				-0.4
1,192,106	-				+0.2
1,192,108	+				-1.9
1,192,108	+				-0.5
1,192,110	+				-0.2
1,192,111	-				+1.1
1,192,111	-				-1.7
1,192,111	-				-0.2
1,192,113	+				+0.4
1,192,121	-				+0.2
1,192,135	-				-0.6
1,192,177	+				-0.5
1,192,206	+		GFF1185	0.12	+0.4
1,192,214	+		GFF1185	0.13	+0.8
1,192,295	-		GFF1185	0.19	-0.4
1,192,305	+		GFF1185	0.20	-0.6
1,192,329	-		GFF1185	0.22	-0.4
1,192,329	-		GFF1185	0.22	-1.0
1,192,331	+		GFF1185	0.22	-0.3
1,192,336	+		GFF1185	0.23	-1.4
1,192,344	-		GFF1185	0.23	-0.0
1,192,353	+		GFF1185	0.24	-1.3
1,192,353	+		GFF1185	0.24	-0.3
1,192,353	+		GFF1185	0.24	-0.2
1,192,353	+		GFF1185	0.24	-0.9
1,192,353	+		GFF1185	0.24	-2.6
1,192,353	+		GFF1185	0.24	-1.9
1,192,353	+		GFF1185	0.24	+1.2
1,192,353	+		GFF1185	0.24	-1.0
1,192,360	+		GFF1185	0.25	+0.7
1,192,360	+		GFF1185	0.25	+1.2
1,192,361	-		GFF1185	0.25	+0.8
1,192,361	-		GFF1185	0.25	-0.3
1,192,361	-		GFF1185	0.25	-0.5
1,192,361	-		GFF1185	0.25	-0.9
1,192,361	-		GFF1185	0.25	-0.2
1,192,361	-		GFF1185	0.25	-1.0
1,192,411	+		GFF1185	0.29	-2.1
1,192,421	+		GFF1185	0.30	-1.0
1,192,437	-		GFF1185	0.31	-1.8
1,192,479	+		GFF1185	0.34	-1.0
1,192,506	-		GFF1185	0.36	+0.4
1,192,508	-		GFF1185	0.37	-2.5
1,192,515	+		GFF1185	0.37	-1.2
1,192,520	+		GFF1185	0.38	-1.3
1,192,520	+		GFF1185	0.38	-0.2
1,192,525	+		GFF1185	0.38	-1.0
1,192,528	-		GFF1185	0.38	+0.1
1,192,528	-		GFF1185	0.38	-1.1
1,192,528	-		GFF1185	0.38	+0.7
1,192,533	-		GFF1185	0.39	-1.1
1,192,533	-		GFF1185	0.39	-0.1
1,192,533	-		GFF1185	0.39	+0.9
1,192,533	-		GFF1185	0.39	+0.8
1,192,535	+		GFF1185	0.39	+0.7
1,192,540	+		GFF1185	0.39	-1.7
1,192,545	+		GFF1185	0.40	-1.1
1,192,571	+		GFF1185	0.42	-1.5
1,192,594	+		GFF1185	0.43	+0.7
1,192,595	-		GFF1185	0.44	-0.2
1,192,602	-		GFF1185	0.44	+1.7
1,192,604	-		GFF1185	0.44	+0.4
1,192,627	+		GFF1185	0.46	-2.2
1,192,627	+		GFF1185	0.46	-2.0
1,192,627	+		GFF1185	0.46	-0.0
1,192,627	+		GFF1185	0.46	-1.5
1,192,627	+		GFF1185	0.46	-0.2
1,192,627	+		GFF1185	0.46	-0.9
1,192,635	-		GFF1185	0.47	-1.4
1,192,635	-		GFF1185	0.47	+0.0
1,192,635	-		GFF1185	0.47	+1.0
1,192,635	-		GFF1185	0.47	-1.0
1,192,635	-		GFF1185	0.47	-0.8
1,192,635	-		GFF1185	0.47	+0.1
1,192,635	-		GFF1185	0.47	-0.8
1,192,635	-		GFF1185	0.47	+0.6
1,192,635	-		GFF1185	0.47	-1.5
1,192,637	+		GFF1185	0.47	-1.6
1,192,702	-		GFF1185	0.52	+0.6
1,192,729	+		GFF1185	0.54	+0.1
1,192,729	+		GFF1185	0.54	+0.6
1,192,729	+		GFF1185	0.54	-0.2
1,192,737	-		GFF1185	0.55	+1.0
1,192,737	-		GFF1185	0.55	-0.4
1,192,737	-		GFF1185	0.55	-0.4
1,192,737	-		GFF1185	0.55	-1.9
1,192,737	-		GFF1185	0.55	-0.5
1,192,739	+		GFF1185	0.55	-0.2
1,192,740	+		GFF1185	0.55	-1.0
1,192,740	+		GFF1185	0.55	+0.6
1,192,740	+		GFF1185	0.55	+0.2
1,192,740	+		GFF1185	0.55	-0.8
1,192,740	+		GFF1185	0.55	-0.6
1,192,740	+		GFF1185	0.55	+0.6
1,192,740	+		GFF1185	0.55	+0.5
1,192,740	+		GFF1185	0.55	+0.4
1,192,740	+		GFF1185	0.55	-0.2
1,192,742	-		GFF1185	0.55	-0.3
1,192,745	+		GFF1185	0.56	-1.0
1,192,748	+		GFF1185	0.56	-0.5
1,192,748	-		GFF1185	0.56	+1.1
1,192,765	+		GFF1185	0.57	-0.8
1,192,765	+		GFF1185	0.57	+0.3
1,192,773	-		GFF1185	0.58	+1.0
1,192,773	-		GFF1185	0.58	-0.6
1,192,783	-		GFF1185	0.59	-1.5
1,192,783	-		GFF1185	0.59	-3.0
1,192,794	+		GFF1185	0.60	-2.5
1,192,794	+		GFF1185	0.60	-0.5
1,192,794	+		GFF1185	0.60	-0.5
1,192,794	+		GFF1185	0.60	-1.4
1,192,794	+		GFF1185	0.60	-0.0
1,192,794	+		GFF1185	0.60	+0.4
1,192,802	-		GFF1185	0.60	+0.6
1,192,802	-		GFF1185	0.60	-1.2
1,192,802	-		GFF1185	0.60	-1.7
1,192,802	-		GFF1185	0.60	-0.4
1,192,802	-		GFF1185	0.60	-0.2
1,192,802	-		GFF1185	0.60	-0.2
1,192,802	-		GFF1185	0.60	+1.3
1,192,810	+		GFF1185	0.61	+0.8
1,192,830	+		GFF1185	0.62	-0.4
1,192,837	+		GFF1185	0.63	-1.3
1,192,837	+		GFF1185	0.63	+1.2
1,192,837	+		GFF1185	0.63	+0.9
1,192,837	+		GFF1185	0.63	-0.9
1,192,845	-		GFF1185	0.64	-1.0
1,192,845	-		GFF1185	0.64	+1.0
1,192,845	-		GFF1185	0.64	+1.4
1,192,845	-		GFF1185	0.64	+0.1
1,192,845	-		GFF1185	0.64	-0.3
1,192,845	-		GFF1185	0.64	-0.7
1,192,845	-		GFF1185	0.64	+0.1
1,192,850	-		GFF1185	0.64	-0.9
1,192,850	-		GFF1185	0.64	-0.8
1,192,850	-		GFF1185	0.64	-1.0
1,192,863	-		GFF1185	0.65	-0.8
1,192,864	-		GFF1185	0.65	-0.3
1,192,875	-		GFF1185	0.66	-1.0
1,192,911	+		GFF1185	0.69	-0.7
1,192,911	+		GFF1185	0.69	-0.4
1,192,911	+		GFF1185	0.69	-2.1
1,192,911	+		GFF1185	0.69	-1.5
1,192,911	+		GFF1185	0.69	-0.3
1,192,911	+		GFF1185	0.69	+0.3
1,192,919	-		GFF1185	0.70	-0.5
1,192,919	-		GFF1185	0.70	+0.1
1,192,919	-		GFF1185	0.70	-0.9
1,192,919	-		GFF1185	0.70	-1.2
1,192,919	-		GFF1185	0.70	-0.3
1,192,919	-		GFF1185	0.70	-2.3
1,192,928	+		GFF1185	0.70	-1.0
1,192,928	+		GFF1185	0.70	-1.0
1,192,958	+		GFF1185	0.73	-0.3
1,192,968	+		GFF1185	0.73	+0.1
1,192,969	+		GFF1185	0.74	-1.4
1,192,969	+		GFF1185	0.74	+0.5
1,192,969	+		GFF1185	0.74	-1.9
1,192,969	+		GFF1185	0.74	-1.2
1,192,974	+		GFF1185	0.74	-1.2
1,192,977	-		GFF1185	0.74	-0.1
1,192,977	-		GFF1185	0.74	-0.5
1,192,977	-		GFF1185	0.74	-1.9
1,192,977	-		GFF1185	0.74	-1.6
1,192,977	-		GFF1185	0.74	-0.9
1,192,977	-		GFF1185	0.74	-1.7
1,192,977	-		GFF1185	0.74	-1.6
1,192,979	-		GFF1185	0.74	-1.7
1,193,017	-		GFF1185	0.77	-1.1
1,193,064	-		GFF1185	0.81	-0.5
1,193,078	+		GFF1185	0.82	-0.9
1,193,083	+		GFF1185	0.83	+0.5
1,193,094	+		GFF1185	0.84	-0.6
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