Strain Fitness in Sphingobium sp. HT1-2 around GFF1138

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,140,969	+		GFF1137	0.47	+0.8
1,140,984	+		GFF1137	0.48	-1.0
1,141,017	+		GFF1137	0.50	-2.4
1,141,031	+		GFF1137	0.50	-0.1
1,141,034	-		GFF1137	0.51	-0.4
1,141,036	+		GFF1137	0.51	-0.8
1,141,041	+		GFF1137	0.51	-1.7
1,141,049	-		GFF1137	0.51	+0.3
1,141,049	-		GFF1137	0.51	-1.4
1,141,053	+		GFF1137	0.52	-1.1
1,141,058	+		GFF1137	0.52	-1.0
1,141,061	-		GFF1137	0.52	+0.1
1,141,061	-		GFF1137	0.52	-1.5
1,141,061	-		GFF1137	0.52	-0.4
1,141,066	-		GFF1137	0.52	-1.1
1,141,068	+		GFF1137	0.52	+0.1
1,141,068	+		GFF1137	0.52	-0.9
1,141,068	+		GFF1137	0.52	-0.2
1,141,068	+		GFF1137	0.52	-1.0
1,141,068	+		GFF1137	0.52	-1.7
1,141,068	-		GFF1137	0.52	-1.6
1,141,076	-		GFF1137	0.53	-1.1
1,141,077	+		GFF1137	0.53	-1.2
1,141,078	+		GFF1137	0.53	+0.6
1,141,089	-		GFF1137	0.54	-0.9
1,141,106	-		GFF1137	0.54	+0.5
1,141,155	+		GFF1137	0.57	+0.4
1,141,155	+		GFF1137	0.57	-0.4
1,141,155	+		GFF1137	0.57	+0.2
1,141,155	+		GFF1137	0.57	-0.1
1,141,163	-		GFF1137	0.57	+0.7
1,141,163	-		GFF1137	0.57	-0.9
1,141,163	-		GFF1137	0.57	-0.1
1,141,189	+		GFF1137	0.59	-0.2
1,141,192	-		GFF1137	0.59	-0.2
1,141,192	-		GFF1137	0.59	-0.3
1,141,214	+		GFF1137	0.60	-1.6
1,141,214	+		GFF1137	0.60	-0.6
1,141,214	+		GFF1137	0.60	-1.0
1,141,215	+		GFF1137	0.60	-0.8
1,141,222	-		GFF1137	0.61	-1.0
1,141,222	-		GFF1137	0.61	+0.0
1,141,222	-		GFF1137	0.61	+0.1
1,141,222	-		GFF1137	0.61	-1.1
1,141,222	-		GFF1137	0.61	-0.5
1,141,222	-		GFF1137	0.61	-0.5
1,141,222	-		GFF1137	0.61	-0.7
1,141,228	-		GFF1137	0.61	-1.3
1,141,232	+		GFF1137	0.61	-1.2
1,141,259	-		GFF1137	0.63	+0.3
1,141,279	+		GFF1137	0.64	-0.0
1,141,287	-		GFF1137	0.64	-0.7
1,141,292	-		GFF1137	0.64	-0.8
1,141,342	-		GFF1137	0.67	+1.5
1,141,348	-		GFF1137	0.67	-0.3
1,141,372	+		GFF1137	0.69	-0.6
1,141,384	-		GFF1137	0.69	-1.5
1,141,399	+		GFF1137	0.70	-0.5
1,141,399	+		GFF1137	0.70	-0.3
1,141,399	+		GFF1137	0.70	-1.0
1,141,399	+		GFF1137	0.70	-0.4
1,141,400	+		GFF1137	0.70	-0.7
1,141,400	+		GFF1137	0.70	-0.8
1,141,400	+		GFF1137	0.70	-2.2
1,141,400	+		GFF1137	0.70	-1.7
1,141,400	+		GFF1137	0.70	-0.3
1,141,400	+		GFF1137	0.70	-0.1
1,141,400	+		GFF1137	0.70	-1.4
1,141,400	+		GFF1137	0.70	-0.2
1,141,400	+		GFF1137	0.70	+1.0
1,141,400	+		GFF1137	0.70	-2.3
1,141,406	+		GFF1137	0.70	+1.2
1,141,407	-		GFF1137	0.70	-0.2
1,141,407	-		GFF1137	0.70	-0.7
1,141,407	-		GFF1137	0.70	-0.6
1,141,407	-		GFF1137	0.70	-1.1
1,141,407	-		GFF1137	0.70	-0.4
1,141,407	-		GFF1137	0.70	-1.0
1,141,407	-		GFF1137	0.70	-0.7
1,141,407	-		GFF1137	0.70	-0.8
1,141,407	-		GFF1137	0.70	-1.0
1,141,407	-		GFF1137	0.70	-1.4
1,141,408	-		GFF1137	0.70	+0.7
1,141,408	-		GFF1137	0.70	-0.7
1,141,408	-		GFF1137	0.70	-1.7
1,141,414	-		GFF1137	0.71	-1.1
1,141,427	+		GFF1137	0.71	-1.5
1,141,435	-		GFF1137	0.72	-0.2
1,141,442	+		GFF1137	0.72	+0.5
1,141,444	+		GFF1137	0.72	-0.2
1,141,450	-		GFF1137	0.73	-1.4
1,141,452	-		GFF1137	0.73	-0.8
1,141,490	+		GFF1137	0.75	+0.0
1,141,490	+		GFF1137	0.75	-1.2
1,141,490	+		GFF1137	0.75	-1.7
1,141,498	-		GFF1137	0.75	+0.4
1,141,498	-		GFF1137	0.75	-2.0
1,141,498	-		GFF1137	0.75	+0.3
1,141,503	+		GFF1137	0.75	-0.9
1,141,503	+		GFF1137	0.75	-1.1
1,141,503	+		GFF1137	0.75	+0.5
1,141,511	-		GFF1137	0.76	+0.9
1,141,511	-		GFF1137	0.76	-1.5
1,141,549	+		GFF1137	0.78	+0.4
1,141,577	+		GFF1137	0.79	+0.7
1,141,577	+		GFF1137	0.79	+0.5
1,141,595	+		GFF1137	0.80	-0.7
1,141,595	+		GFF1137	0.80	+0.0
1,141,601	+		GFF1137	0.81	+0.1
1,141,602	-		GFF1137	0.81	-1.6
1,141,603	-		GFF1137	0.81	-1.7
1,141,603	-		GFF1137	0.81	+0.1
1,141,605	+		GFF1137	0.81	-1.8
1,141,637	+		GFF1137	0.83	+0.2
1,141,645	-		GFF1137	0.83	-1.0
1,141,648	+		GFF1137	0.83	+0.5
1,141,648	+		GFF1137	0.83	+1.0
1,141,648	-		GFF1137	0.83	-0.3
1,141,653	+		GFF1137	0.83	-1.3
1,141,656	-		GFF1137	0.84	+0.7
1,141,714	+		GFF1137	0.87	-0.9
1,141,722	-		GFF1137	0.87	-0.7
1,141,722	-		GFF1137	0.87	+0.3
1,141,722	-		GFF1137	0.87	-1.9
1,141,722	-		GFF1137	0.87	-0.8
1,141,724	+		GFF1137	0.87	-1.0
1,141,724	+		GFF1137	0.87	-0.4
1,141,746	-		GFF1137	0.88	+0.1
1,141,771	+		GFF1137	0.90	-1.4
1,141,777	+		GFF1137	0.90	-0.7
1,141,779	-				+0.6
1,141,779	-				-0.4
1,141,802	+				+0.3
1,141,802	+				-0.9
1,141,805	-				-0.6
1,141,810	-				-1.4
1,141,810	-				-1.0
1,141,810	-				+0.3
1,141,837	+				-1.3
1,141,837	+				-1.0
1,141,837	+				-0.8
1,141,837	+				-2.1
1,141,837	+				-0.6
1,141,837	+				-0.0
1,141,840	-				-0.0
1,141,844	+				+0.3
1,141,845	-				-1.0
1,141,845	-				-1.7
1,141,845	-				-1.1
1,141,845	-				-1.4
1,141,845	-				-1.1
1,141,845	-				+0.6
1,141,871	+				+0.0
1,141,889	-				-1.8
1,141,895	-				+0.1
1,141,907	+				+1.2
1,141,920	-				-1.3
1,141,975	-				+0.3
1,141,975	-				-0.1
1,141,998	-				+0.5
1,142,015	+				+0.3
1,142,015	+				+0.1
1,142,023	-				-0.6
1,142,032	-				-1.1
1,142,032	-				-0.3
1,142,035	+				-2.0
1,142,035	+				+1.0
1,142,053	+				-1.0
1,142,083	-		GFF1138	0.12	+0.2
1,142,100	+		GFF1138	0.14	+0.4
1,142,118	+		GFF1138	0.16	-1.0
1,142,125	+		GFF1138	0.16	-1.2
1,142,130	+		GFF1138	0.17	-0.9
1,142,133	-		GFF1138	0.17	-0.8
1,142,133	-		GFF1138	0.17	-1.7
1,142,138	-		GFF1138	0.18	+0.2
1,142,138	-		GFF1138	0.18	-0.2
1,142,143	-		GFF1138	0.18	+0.1
1,142,143	-		GFF1138	0.18	-1.7
1,142,156	-		GFF1138	0.20	-1.1
1,142,157	+		GFF1138	0.20	+0.2
1,142,165	-		GFF1138	0.20	-0.6
1,142,166	+		GFF1138	0.21	-0.4
1,142,166	+		GFF1138	0.21	-0.2
1,142,171	+		GFF1138	0.21	-0.6
1,142,171	+		GFF1138	0.21	-1.4
1,142,179	-		GFF1138	0.22	-0.5
1,142,179	-		GFF1138	0.22	-1.9
1,142,179	-		GFF1138	0.22	+0.8
1,142,179	-		GFF1138	0.22	-1.4
1,142,203	+		GFF1138	0.24	-0.7
1,142,209	+		GFF1138	0.25	+0.5
1,142,211	-		GFF1138	0.25	-0.4
1,142,233	+		GFF1138	0.28	-3.0
1,142,233	+		GFF1138	0.28	-2.5
1,142,233	+		GFF1138	0.28	-1.5
1,142,233	+		GFF1138	0.28	+0.8
1,142,233	+		GFF1138	0.28	+1.0
1,142,233	+		GFF1138	0.28	-0.6
1,142,233	+		GFF1138	0.28	-0.2
1,142,233	+		GFF1138	0.28	-1.2
1,142,233	+		GFF1138	0.28	-1.2
1,142,233	+		GFF1138	0.28	+0.2
1,142,233	+		GFF1138	0.28	-1.1
1,142,233	+		GFF1138	0.28	+0.7
1,142,233	+		GFF1138	0.28	-0.3
1,142,233	+		GFF1138	0.28	-1.5
1,142,241	-		GFF1138	0.28	-2.0
1,142,241	-		GFF1138	0.28	-1.7
1,142,241	-		GFF1138	0.28	-0.6
1,142,241	-		GFF1138	0.28	-0.5
1,142,241	-		GFF1138	0.28	+0.8
1,142,250	+		GFF1138	0.29	-0.4
1,142,258	-		GFF1138	0.30	-0.2
1,142,260	+		GFF1138	0.30	-1.5
1,142,263	-		GFF1138	0.31	+0.1
1,142,271	+		GFF1138	0.31	+0.4
1,142,287	+		GFF1138	0.33	-0.4
1,142,290	+		GFF1138	0.33	-1.0
1,142,293	-		GFF1138	0.34	-1.2
1,142,295	-		GFF1138	0.34	-0.5
1,142,326	-		GFF1138	0.37	-1.2
1,142,327	-		GFF1138	0.37	+0.5
1,142,338	+		GFF1138	0.38	-1.0
1,142,341	-		GFF1138	0.39	-1.8
1,142,341	-		GFF1138	0.39	-2.3
1,142,346	+		GFF1138	0.39	-0.1
1,142,346	+		GFF1138	0.39	-1.0
1,142,346	-		GFF1138	0.39	-0.9
1,142,354	-		GFF1138	0.40	-0.4
1,142,354	-		GFF1138	0.40	-1.1
1,142,354	-		GFF1138	0.40	-1.2
1,142,354	-		GFF1138	0.40	-0.8
1,142,374	+		GFF1138	0.42	-0.4
1,142,379	+		GFF1138	0.43	-1.4
1,142,387	-		GFF1138	0.44	-0.3
1,142,414	+		GFF1138	0.46	+0.2
1,142,425	+		GFF1138	0.47	-0.2
1,142,430	+		GFF1138	0.48	-0.5
1,142,430	+		GFF1138	0.48	-1.0
1,142,438	-		GFF1138	0.49	-1.2
1,142,438	-		GFF1138	0.49	+0.8
1,142,438	-		GFF1138	0.49	-0.6
1,142,438	-		GFF1138	0.49	-1.6
1,142,438	-		GFF1138	0.49	-0.7
1,142,443	-		GFF1138	0.49	-1.3
1,142,464	-		GFF1138	0.52	+0.6
1,142,489	+		GFF1138	0.54	+0.8
1,142,495	-		GFF1138	0.55	-0.8
1,142,510	-		GFF1138	0.56	-0.0
1,142,518	+		GFF1138	0.57	-0.3
1,142,528	+		GFF1138	0.58	-0.0
1,142,528	+		GFF1138	0.58	-0.5
1,142,528	+		GFF1138	0.58	-1.5
1,142,528	+		GFF1138	0.58	-1.0
1,142,528	+		GFF1138	0.58	-1.2
1,142,534	-		GFF1138	0.59	+0.5
1,142,536	-		GFF1138	0.59	-0.7
1,142,536	-		GFF1138	0.59	-2.4
1,142,536	-		GFF1138	0.59	+2.3
1,142,565	-		GFF1138	0.62	-1.7
1,142,574	+		GFF1138	0.63	-1.0
1,142,591	+		GFF1138	0.65	+0.5
1,142,591	+		GFF1138	0.65	+0.4
1,142,591	+		GFF1138	0.65	-1.7
1,142,596	+		GFF1138	0.65	-1.7
1,142,596	+		GFF1138	0.65	-0.5
1,142,596	+		GFF1138	0.65	-0.2
1,142,599	-		GFF1138	0.66	-0.3
1,142,599	-		GFF1138	0.66	-1.0
1,142,646	+		GFF1138	0.70	-1.7
1,142,651	+		GFF1138	0.71	+0.2
1,142,654	-		GFF1138	0.71	+0.9
1,142,654	-		GFF1138	0.71	-0.1
1,142,654	-		GFF1138	0.71	-1.0
1,142,665	+		GFF1138	0.72	+0.2
1,142,666	+		GFF1138	0.72	+0.7
1,142,666	+		GFF1138	0.72	+0.5
1,142,666	+		GFF1138	0.72	-1.4
1,142,666	+		GFF1138	0.72	-1.9
1,142,666	+		GFF1138	0.72	-0.0
1,142,666	-		GFF1138	0.72	+0.0
1,142,673	+		GFF1138	0.73	-1.2
1,142,673	+		GFF1138	0.73	-2.4
1,142,673	+		GFF1138	0.73	-1.1
1,142,673	+		GFF1138	0.73	-0.2
1,142,673	+		GFF1138	0.73	+0.8
1,142,673	+		GFF1138	0.73	-0.2
1,142,673	-		GFF1138	0.73	+0.0
1,142,674	-		GFF1138	0.73	-0.8
1,142,674	-		GFF1138	0.73	-0.5
1,142,674	-		GFF1138	0.73	-0.3
1,142,681	-		GFF1138	0.74	+0.6
1,142,681	-		GFF1138	0.74	+0.1
1,142,681	-		GFF1138	0.74	-0.2
1,142,698	-		GFF1138	0.76	-0.8
1,142,722	-		GFF1138	0.78	+0.6
1,142,729	-		GFF1138	0.79	+0.9
1,142,729	-		GFF1138	0.79	-1.0
1,142,730	-		GFF1138	0.79	-0.6
1,142,742	-		GFF1138	0.80	-0.8
1,142,757	-		GFF1138	0.82	-1.9
1,142,780	+		GFF1138	0.84	+0.7
1,142,780	+		GFF1138	0.84	+0.6
1,142,785	+		GFF1138	0.85	-0.6
1,142,788	-		GFF1138	0.85	-0.5
1,142,793	+		GFF1138	0.86	-1.9
1,142,808	+		GFF1138	0.87	+0.3
1,142,808	+		GFF1138	0.87	-1.2
1,142,808	+		GFF1138	0.87	+0.5
1,142,811	-		GFF1138	0.88	+1.4
1,142,813	+		GFF1138	0.88	+0.5
1,142,813	+		GFF1138	0.88	+0.8
1,142,813	+		GFF1138	0.88	-0.5
1,142,816	-		GFF1138	0.88	-1.0
1,142,816	-		GFF1138	0.88	+0.5
1,142,818	+		GFF1138	0.88	-1.0
1,142,818	+		GFF1138	0.88	-0.6
1,142,818	+		GFF1138	0.88	-1.4
1,142,818	+		GFF1138	0.88	-0.9
1,142,818	+		GFF1138	0.88	+1.2
1,142,818	+		GFF1138	0.88	-0.6
1,142,818	+		GFF1138	0.88	-1.1
1,142,821	-		GFF1138	0.89	+0.4
1,142,821	-		GFF1138	0.89	-1.4
1,142,821	-		GFF1138	0.89	-1.2
1,142,823	+		GFF1138	0.89	+0.4
1,142,823	+		GFF1138	0.89	+1.2
1,142,823	+		GFF1138	0.89	+0.0
1,142,823	+		GFF1138	0.89	-0.9
1,142,823	+		GFF1138	0.89	-1.0
1,142,823	+		GFF1138	0.89	-2.0
1,142,823	+		GFF1138	0.89	-1.6
1,142,823	+		GFF1138	0.89	-0.9
1,142,823	+		GFF1138	0.89	-1.3
1,142,823	+		GFF1138	0.89	-0.4
1,142,823	+		GFF1138	0.89	-0.4
1,142,823	+		GFF1138	0.89	+0.2
1,142,823	+		GFF1138	0.89	+0.2
1,142,823	+		GFF1138	0.89	+2.1
1,142,823	+		GFF1138	0.89	+0.1
1,142,823	+		GFF1138	0.89	-1.8
1,142,823	+		GFF1138	0.89	+0.3
1,142,823	+		GFF1138	0.89	-1.9
1,142,823	+		GFF1138	0.89	+0.3
1,142,826	-		GFF1138	0.89	-1.3
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