Strain Fitness in Sphingobium sp. HT1-2 around GFF1100

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,099,727	-		GFF1098	0.21	+0.7
1,099,746	-		GFF1098	0.32	+0.5
1,099,748	+		GFF1098	0.33	-1.1
1,099,755	+		GFF1098	0.37	-0.8
1,099,801	+		GFF1098	0.62	-1.2
1,099,801	+		GFF1098	0.62	-1.4
1,099,801	+		GFF1098	0.62	-0.6
1,099,809	-		GFF1098	0.67	-0.7
1,099,810	+		GFF1098	0.67	-0.8
1,099,818	-		GFF1098	0.72	-1.0
1,099,824	+		GFF1098	0.75	-1.6
1,099,830	+		GFF1098	0.78	+0.7
1,099,832	-		GFF1098	0.79	+0.3
1,099,838	-		GFF1098	0.83	+0.3
1,099,869	-				+0.5
1,099,897	+				+0.5
1,099,901	-				-0.4
1,099,903	-				+1.0
1,099,915	+				-1.4
1,099,946	-				-0.9
1,099,963	+				-0.4
1,099,963	-				-0.6
1,099,970	+				-1.3
1,099,971	-				-0.7
1,100,045	+				+0.6
1,100,045	+				-0.8
1,100,045	+				-0.8
1,100,045	+				-1.0
1,100,045	+				-0.4
1,100,053	-				-2.2
1,100,053	-				-1.5
1,100,053	-				+2.3
1,100,053	-				-0.2
1,100,063	-				-0.5
1,100,063	-				+2.1
1,100,067	+				+0.6
1,100,109	+		GFF1099	0.33	-0.8
1,100,111	+		GFF1099	0.34	-0.8
1,100,116	+		GFF1099	0.38	-1.1
1,100,123	+		GFF1099	0.43	-0.7
1,100,124	-		GFF1099	0.44	+0.4
1,100,124	-		GFF1099	0.44	-1.6
1,100,131	-		GFF1099	0.49	-1.8
1,100,138	+		GFF1099	0.55	-0.1
1,100,205	-				-0.5
1,100,205	-				+0.4
1,100,246	+				-0.8
1,100,255	+				-1.1
1,100,263	-				-1.0
1,100,263	-				-0.4
1,100,263	-				-0.9
1,100,272	+				-0.4
1,100,329	+				-1.3
1,100,329	+				+0.2
1,100,341	+				-1.7
1,100,342	-				-0.6
1,100,347	-				-1.2
1,100,347	-				-0.3
1,100,352	+				-1.5
1,100,352	+				+0.4
1,100,358	+				-0.3
1,100,366	-				+0.3
1,100,385	-				-0.2
1,100,387	-				+1.0
1,100,389	+				-0.7
1,100,389	+				-1.2
1,100,389	+				-1.1
1,100,389	+				+1.4
1,100,394	+				-0.1
1,100,397	-				-0.2
1,100,397	-				+0.2
1,100,405	-				-0.4
1,100,411	+				+2.0
1,100,418	+				+1.4
1,100,418	+				-1.3
1,100,419	-				-0.7
1,100,436	-				-1.1
1,100,444	+				-0.6
1,100,444	+				+0.1
1,100,444	+				-1.1
1,100,445	+				+0.3
1,100,445	+				-0.6
1,100,445	+				+1.3
1,100,445	+				-1.2
1,100,445	+				+0.9
1,100,452	+				+1.3
1,100,452	+				+0.4
1,100,452	-				-0.0
1,100,452	-				-0.4
1,100,452	-				+0.3
1,100,453	-				-0.8
1,100,453	-				-0.1
1,100,453	-				-0.2
1,100,453	-				+0.8
1,100,453	-				-1.1
1,100,453	-				+0.4
1,100,453	-				-0.3
1,100,453	-				+0.5
1,100,453	-				-1.4
1,100,455	+				-1.1
1,100,457	+				-0.8
1,100,464	+				+0.3
1,100,464	+				-0.7
1,100,464	+				-0.4
1,100,465	-				-0.9
1,100,471	+				-1.0
1,100,472	-				-0.1
1,100,472	-				-0.9
1,100,472	-				-0.4
1,100,472	-				+0.1
1,100,472	-				-0.3
1,100,498	-				+1.4
1,100,532	+				-0.4
1,100,532	+				-1.0
1,100,551	+				-0.3
1,100,556	+				+0.6
1,100,559	-				-0.1
1,100,559	-				+0.6
1,100,559	-				-0.6
1,100,570	+				-1.4
1,100,570	+				-0.7
1,100,577	+				-1.4
1,100,578	-				-0.3
1,100,590	+				+0.1
1,100,590	+				-1.4
1,100,593	-				-0.7
1,100,594	+				+0.6
1,100,594	+				-1.6
1,100,611	+				-1.2
1,100,611	+				-1.1
1,100,619	-				+0.7
1,100,619	-				-0.6
1,100,619	-				+1.5
1,100,634	+				+0.6
1,100,635	+				-0.2
1,100,642	-				-0.3
1,100,660	-				-1.1
1,100,671	+				+0.3
1,100,671	+				+0.0
1,100,671	+				-0.9
1,100,671	+				-0.2
1,100,671	+				-1.2
1,100,679	-				+0.6
1,100,679	-				-0.3
1,100,688	+				+0.8
1,100,688	+				-2.1
1,100,688	+				-0.8
1,100,688	+				-0.6
1,100,688	+				-0.4
1,100,688	+				-0.8
1,100,688	+				-0.2
1,100,688	+				+0.5
1,100,688	+				+0.1
1,100,692	+				+0.5
1,100,696	-				+0.0
1,100,696	-				-1.3
1,100,696	-				+0.4
1,100,696	-				-0.6
1,100,700	-				-1.1
1,100,710	-				+0.4
1,100,725	+				-0.2
1,100,729	+				+0.2
1,100,732	-				+0.7
1,100,736	+				+0.7
1,100,742	+				-0.7
1,100,742	+				-0.2
1,100,742	+				-1.9
1,100,742	+				-0.8
1,100,742	+				-0.5
1,100,742	+				-0.6
1,100,742	+				+0.7
1,100,750	-				+0.9
1,100,751	-				-0.3
1,100,755	-				+0.8
1,100,756	-				-1.1
1,100,769	+				-0.2
1,100,771	+				+0.2
1,100,771	+				-1.3
1,100,771	+				+0.4
1,100,771	+				-1.1
1,100,771	+				-1.7
1,100,776	+				+0.6
1,100,776	+				-1.1
1,100,777	+				-2.4
1,100,779	-				-1.1
1,100,779	-				-1.0
1,100,779	-				+0.5
1,100,779	-				+2.4
1,100,779	-				-0.2
1,100,779	-				-0.5
1,100,783	+				-0.9
1,100,783	+				-1.4
1,100,783	+				-0.2
1,100,783	+				+0.7
1,100,783	+				-1.3
1,100,791	-		GFF1100	0.11	+0.2
1,100,791	-		GFF1100	0.11	-1.3
1,100,792	+		GFF1100	0.11	-0.8
1,100,792	+		GFF1100	0.11	+1.0
1,100,795	-		GFF1100	0.12	+0.2
1,100,801	-		GFF1100	0.12	-1.5
1,100,803	-		GFF1100	0.13	+0.5
1,100,805	+		GFF1100	0.13	+0.5
1,100,808	-		GFF1100	0.14	-0.4
1,100,830	+		GFF1100	0.17	-0.5
1,100,830	+		GFF1100	0.17	-1.1
1,100,830	+		GFF1100	0.17	-1.3
1,100,838	-		GFF1100	0.19	+0.0
1,100,838	-		GFF1100	0.19	+0.3
1,100,838	-		GFF1100	0.19	-0.3
1,100,838	-		GFF1100	0.19	-0.2
1,100,838	-		GFF1100	0.19	-0.6
1,100,843	-		GFF1100	0.20	-0.1
1,100,843	-		GFF1100	0.20	+0.7
1,100,843	-		GFF1100	0.20	-0.6
1,100,845	+		GFF1100	0.20	-0.7
1,100,878	-		GFF1100	0.25	-0.9
1,100,878	-		GFF1100	0.25	+0.2
1,100,882	-		GFF1100	0.26	+0.0
1,100,899	+		GFF1100	0.29	-1.3
1,100,902	-		GFF1100	0.29	+1.4
1,100,917	+		GFF1100	0.32	-0.8
1,100,917	+		GFF1100	0.32	-1.3
1,100,917	+		GFF1100	0.32	-1.0
1,100,928	+		GFF1100	0.34	-0.6
1,100,951	+		GFF1100	0.38	-0.2
1,100,972	+		GFF1100	0.41	-0.1
1,100,972	+		GFF1100	0.41	-1.2
1,100,978	-		GFF1100	0.42	-1.3
1,100,980	-		GFF1100	0.42	-1.4
1,100,980	-		GFF1100	0.42	-0.7
1,100,991	-		GFF1100	0.44	+0.2
1,101,008	+		GFF1100	0.47	-0.5
1,101,058	+		GFF1100	0.55	+0.8
1,101,058	+		GFF1100	0.55	+1.0
1,101,066	-		GFF1100	0.57	-0.3
1,101,068	+		GFF1100	0.57	-0.3
1,101,112	+		GFF1100	0.64	-0.4
1,101,122	+		GFF1100	0.66	+0.6
1,101,122	+		GFF1100	0.66	+0.6
1,101,135	+		GFF1100	0.68	-0.6
1,101,135	+		GFF1100	0.68	-0.9
1,101,135	+		GFF1100	0.68	-0.6
1,101,135	+		GFF1100	0.68	-0.4
1,101,135	+		GFF1100	0.68	-1.5
1,101,140	+		GFF1100	0.69	-0.4
1,101,143	-		GFF1100	0.69	-0.5
1,101,153	-		GFF1100	0.71	-1.7
1,101,154	-		GFF1100	0.71	+0.1
1,101,182	-		GFF1100	0.76	-0.9
1,101,191	+		GFF1100	0.78	-1.8
1,101,199	-		GFF1100	0.79	-0.2
1,101,200	-		GFF1100	0.79	-0.7
1,101,200	-		GFF1100	0.79	-0.5
1,101,213	+		GFF1100	0.81	+1.8
1,101,213	+		GFF1100	0.81	+0.7
1,101,221	-		GFF1100	0.82	-0.9
1,101,237	+		GFF1100	0.85	+1.7
1,101,238	-		GFF1100	0.85	+0.3
1,101,240	+		GFF1100	0.86	-0.4
1,101,245	-		GFF1100	0.86	-0.4
1,101,245	-		GFF1100	0.86	+0.9
1,101,246	+		GFF1100	0.87	-0.6
1,101,248	+		GFF1100	0.87	+0.7
1,101,256	-		GFF1100	0.88	+0.6
1,101,256	-		GFF1100	0.88	-1.6
1,101,256	-		GFF1100	0.88	-0.5
1,101,281	-				+0.5
1,101,286	-				-1.0
1,101,286	-				+0.9
1,101,289	-				-2.1
1,101,291	-				+1.4
1,101,314	-				-0.3
1,101,332	+				-1.5
1,101,354	+				-0.4
1,101,367	+				-1.1
1,101,368	+				-1.5
1,101,368	+				-1.1
1,101,376	-				+0.8
1,101,376	-				-0.5
1,101,376	-				-0.3
1,101,376	-				+0.3