Strain Fitness in Sphingobium sp. HT1-2 around GFF11

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
5,266	-		GFF8	0.51	-0.2
5,279	+		GFF8	0.54	-0.4
5,281	-		GFF8	0.55	-0.6
5,284	+		GFF8	0.56	-0.2
5,295	+		GFF8	0.58	+0.1
5,295	+		GFF8	0.58	-0.1
5,303	-		GFF8	0.60	-1.6
5,308	+		GFF8	0.62	+0.4
5,343	+		GFF8	0.70	-1.3
5,348	+		GFF8	0.72	-0.1
5,348	+		GFF8	0.72	-0.3
5,356	-		GFF8	0.74	-0.3
5,392	+		GFF8	0.83	-1.2
5,392	+		GFF8	0.83	-0.7
5,392	+		GFF8	0.83	-1.1
5,400	-		GFF8	0.85	-1.0
5,407	+		GFF8	0.86	-0.8
5,431	+				-1.7
5,435	+				-0.2
5,443	-				-0.4
5,447	-				-1.6
5,464	-				-1.2
5,464	-				-0.2
5,480	+				-1.0
5,508	-				+0.9
5,631	+		GFF9	0.71	+0.9
5,634	-		GFF9	0.74	-1.0
5,634	-		GFF9	0.74	-0.7
5,636	+		GFF9	0.75	-0.9
5,636	+		GFF9	0.75	-0.2
5,636	+		GFF9	0.75	+0.3
5,644	-		GFF9	0.82	-0.5
5,663	-				-1.5
5,686	-				-1.3
5,696	+				-1.5
5,696	+				+0.2
5,702	-				-2.4
5,702	-				-0.5
5,704	-				-0.2
5,712	-				-0.1
5,714	-				-1.5
5,729	-				-1.8
5,746	+				-0.7
5,746	+				-0.6
5,747	+				-1.1
5,754	-				-1.0
5,757	-				-0.8
5,760	+				+1.5
5,763	-				-1.0
5,770	-				-1.1
5,777	-				+1.1
5,782	-				-1.3
5,797	+		GFF10	0.13	-0.2
5,817	-		GFF10	0.19	-0.1
5,876	+		GFF10	0.39	-0.8
5,881	+		GFF10	0.40	-1.5
5,891	+		GFF10	0.43	-1.1
5,899	-		GFF10	0.46	-0.7
5,906	+		GFF10	0.48	-0.4
5,914	-		GFF10	0.51	+0.1
5,949	+		GFF10	0.62	+0.5
5,971	+		GFF10	0.69	-0.1
6,041	-				-1.0
6,047	+				-1.2
6,183	+				-0.3
6,245	-				-0.8
6,273	+				-0.2
6,273	+				+0.6
6,273	+				-0.5
6,281	-				-0.6
6,281	-				+0.5
6,281	-				+0.4
6,281	-				-1.5
6,286	-				-0.3
6,297	+				-0.4
6,316	-				-0.7
6,322	-				-0.9
6,341	+				-0.5
6,349	-				-1.0
6,349	-				-0.0
6,351	+				+0.7
6,354	-				-0.0
6,356	+				+1.1
6,356	+				+0.3
6,357	+				-1.2
6,357	+				-0.7
6,357	+				+0.4
6,357	+				-0.8
6,357	+				+0.4
6,359	-				-1.9
6,364	-				+0.3
6,364	-				+1.1
6,365	-				-1.4
6,397	+		GFF11	0.11	-0.1
6,403	-		GFF11	0.12	-0.7
6,405	-		GFF11	0.12	-0.8
6,411	-		GFF11	0.12	-0.3
6,413	+		GFF11	0.12	-0.1
6,497	-		GFF11	0.18	-0.5
6,519	+		GFF11	0.19	+0.3
6,519	+		GFF11	0.19	-0.8
6,519	+		GFF11	0.19	+0.4
6,519	+		GFF11	0.19	+0.6
6,519	+		GFF11	0.19	+0.7
6,519	+		GFF11	0.19	+2.0
6,521	+		GFF11	0.19	+1.0
6,521	+		GFF11	0.19	-0.8
6,521	+		GFF11	0.19	-0.8
6,521	+		GFF11	0.19	-1.0
6,523	+		GFF11	0.19	+0.9
6,527	-		GFF11	0.20	+0.0
6,527	-		GFF11	0.20	-0.7
6,527	-		GFF11	0.20	-0.4
6,529	-		GFF11	0.20	-0.8
6,540	-		GFF11	0.20	-1.7
6,558	+		GFF11	0.21	+1.4
6,558	+		GFF11	0.21	+1.9
6,558	+		GFF11	0.21	-0.8
6,560	+		GFF11	0.22	+0.6
6,566	-		GFF11	0.22	+0.9
6,566	-		GFF11	0.22	-0.6
6,566	-		GFF11	0.22	+0.8
6,566	-		GFF11	0.22	+0.9
6,566	-		GFF11	0.22	-0.6
6,566	-		GFF11	0.22	-1.1
6,566	-		GFF11	0.22	-0.3
6,566	-		GFF11	0.22	-1.3
6,566	-		GFF11	0.22	-1.7
6,582	+		GFF11	0.23	+0.8
6,590	-		GFF11	0.24	-0.7
6,590	-		GFF11	0.24	-0.0
6,618	+		GFF11	0.25	-0.3
6,618	+		GFF11	0.25	-0.2
6,624	-		GFF11	0.26	+0.7
6,624	-		GFF11	0.26	-0.1
6,665	-		GFF11	0.28	+0.5
6,686	+		GFF11	0.30	-0.1
6,705	-		GFF11	0.31	-0.4
6,716	-		GFF11	0.32	+1.3
6,719	-		GFF11	0.32	+1.0
6,727	+		GFF11	0.32	+1.6
6,740	-		GFF11	0.33	+0.5
6,740	-		GFF11	0.33	+0.4
6,764	+		GFF11	0.35	-0.6
6,779	+		GFF11	0.36	-1.2
6,782	-		GFF11	0.36	+0.4
6,787	-		GFF11	0.36	+0.0
6,788	+		GFF11	0.36	+0.3
6,798	+		GFF11	0.37	+0.3
6,865	-		GFF11	0.41	-0.1
6,868	+		GFF11	0.41	-1.5
6,873	+		GFF11	0.42	-1.2
6,873	+		GFF11	0.42	-0.3
6,881	-		GFF11	0.42	+1.4
6,881	-		GFF11	0.42	-0.9
6,885	+		GFF11	0.42	+1.4
6,891	+		GFF11	0.43	-0.5
6,895	+		GFF11	0.43	-1.1
6,905	+		GFF11	0.44	+1.7
6,905	+		GFF11	0.44	+0.0
6,913	-		GFF11	0.44	-0.0
6,914	+		GFF11	0.44	-0.3
6,923	+		GFF11	0.45	-1.4
6,962	+		GFF11	0.47	-0.9
6,965	-		GFF11	0.48	-0.8
6,965	-		GFF11	0.48	+1.0
6,968	+		GFF11	0.48	-0.6
6,968	+		GFF11	0.48	-0.6
6,976	-		GFF11	0.48	+0.6
6,980	+		GFF11	0.48	-1.7
6,985	+		GFF11	0.49	+0.1
6,985	+		GFF11	0.49	-0.1
6,985	+		GFF11	0.49	-1.7
6,985	+		GFF11	0.49	-0.2
6,985	+		GFF11	0.49	-0.1
6,993	-		GFF11	0.49	-1.5
6,995	-		GFF11	0.49	-1.7
7,032	+		GFF11	0.52	-0.1
7,036	+		GFF11	0.52	-0.2
7,037	-		GFF11	0.52	-1.4
7,039	-		GFF11	0.52	+0.3
7,040	-		GFF11	0.52	-0.3
7,043	+		GFF11	0.53	-0.5
7,045	-		GFF11	0.53	+1.1
7,051	-		GFF11	0.53	-0.4
7,063	+		GFF11	0.54	-0.5
7,066	+		GFF11	0.54	-0.1
7,079	-		GFF11	0.55	-0.9
7,098	-		GFF11	0.56	+0.4
7,131	-		GFF11	0.58	-1.5
7,136	-		GFF11	0.58	-0.6
7,138	+		GFF11	0.59	-0.4
7,147	-		GFF11	0.59	-0.2
7,150	+		GFF11	0.59	-1.2
7,186	+		GFF11	0.62	+1.1
7,193	+		GFF11	0.62	-0.0
7,194	-		GFF11	0.62	-0.9
7,203	+		GFF11	0.63	-1.4
7,209	+		GFF11	0.63	+1.0
7,217	-		GFF11	0.64	-1.1
7,217	-		GFF11	0.64	-1.4
7,219	+		GFF11	0.64	-0.9
7,219	+		GFF11	0.64	-2.0
7,219	+		GFF11	0.64	-0.1
7,219	+		GFF11	0.64	-0.3
7,227	-		GFF11	0.64	-0.8
7,227	-		GFF11	0.64	+1.0
7,227	-		GFF11	0.64	-0.5
7,228	+		GFF11	0.64	-0.3
7,236	-		GFF11	0.65	+0.8
7,245	+		GFF11	0.65	-1.9
7,245	+		GFF11	0.65	-0.2
7,270	+		GFF11	0.67	-1.0
7,273	+		GFF11	0.67	-0.0
7,279	-		GFF11	0.68	-1.8
7,279	-		GFF11	0.68	+1.4
7,279	-		GFF11	0.68	-0.2
7,279	-		GFF11	0.68	-1.8
7,293	+		GFF11	0.69	-1.0
7,293	+		GFF11	0.69	-0.5
7,293	+		GFF11	0.69	-0.4
7,301	-		GFF11	0.69	-0.0
7,303	-		GFF11	0.69	-0.9
7,330	+		GFF11	0.71	-1.0
7,338	-		GFF11	0.71	+0.1
7,339	-		GFF11	0.71	-0.2
7,384	+		GFF11	0.74	+0.0
7,384	+		GFF11	0.74	-1.1
7,386	+		GFF11	0.74	-0.4
7,386	+		GFF11	0.74	-2.1
7,392	-		GFF11	0.75	-1.3
7,394	-		GFF11	0.75	+0.2
7,396	+		GFF11	0.75	-0.3
7,410	+		GFF11	0.76	+0.6
7,418	-		GFF11	0.77	+1.0
7,430	-		GFF11	0.77	+0.7
7,472	+		GFF11	0.80	+0.4
7,474	-		GFF11	0.80	-1.4
7,480	-		GFF11	0.80	+1.4
7,517	+		GFF11	0.83	-1.3
7,517	+		GFF11	0.83	-0.8
7,520	-		GFF11	0.83	-1.4
7,520	-		GFF11	0.83	+0.6
7,525	-		GFF11	0.83	-0.7
7,525	-		GFF11	0.83	+0.7
7,528	+		GFF11	0.84	+1.0
7,535	-		GFF11	0.84	-0.7
7,535	-		GFF11	0.84	+0.8
7,607	-		GFF11	0.89	-0.8
7,634	+				-1.5
7,648	+				-0.1
7,648	+				-0.1
7,648	+				+0.9
7,648	+				-0.8
7,649	-				-0.6
7,649	-				-1.5
7,656	-				-0.1
7,656	-				-0.6
7,656	-				+0.8
7,656	-				+0.1
7,672	+				-0.1
7,672	+				-1.0
7,676	+				+0.9
7,680	-				-1.2
7,682	+				+1.6
7,682	+				-0.9
7,682	+				-0.6
7,690	-				-0.3
7,690	-				-0.3
7,690	-				-0.1
7,690	-				+1.0
7,693	+				-0.8
7,709	+				-0.6
7,715	+				-0.9
7,717	-				+2.3
7,723	-				+1.0
7,767	-				+0.7
7,855	+				+0.6
7,870	-				-0.4
7,920	+		GFF12	0.10	+0.8
7,966	-		GFF12	0.14	+0.8
7,966	-		GFF12	0.14	-1.0
7,966	-		GFF12	0.14	-0.6
7,988	+		GFF12	0.16	-1.0
7,989	+		GFF12	0.16	-1.2
7,990	-		GFF12	0.16	+1.0
7,996	-		GFF12	0.16	+0.7
7,997	-		GFF12	0.16	+0.3
7,999	+		GFF12	0.16	-0.1
8,018	-		GFF12	0.18	-1.8
8,034	+		GFF12	0.19	-1.4
8,041	+		GFF12	0.20	-2.2
8,060	-		GFF12	0.21	-1.7
8,070	-		GFF12	0.22	+2.0
8,074	-		GFF12	0.22	+1.1
8,076	+		GFF12	0.23	-0.2
8,097	-		GFF12	0.24	-1.6
8,122	+		GFF12	0.26	-0.1
8,122	+		GFF12	0.26	+0.4
8,151	-		GFF12	0.29	+0.6
8,153	+		GFF12	0.29	-1.2
8,161	-		GFF12	0.30	-0.8
8,162	-		GFF12	0.30	-1.4
8,203	+		GFF12	0.33	-0.1
8,227	-		GFF12	0.35	+0.8
8,291	-		GFF12	0.40	+1.1
8,291	-		GFF12	0.40	-1.5
8,298	-		GFF12	0.41	+1.0
8,320	-		GFF12	0.42	-0.2
8,321	+		GFF12	0.42	-1.8
8,321	+		GFF12	0.42	-0.7
8,322	+		GFF12	0.43	-1.6
8,329	-		GFF12	0.43	-0.4
8,329	-		GFF12	0.43	-0.7
8,347	-		GFF12	0.45	+0.7
8,356	+		GFF12	0.45	-1.4
8,356	+		GFF12	0.45	+0.5
8,356	+		GFF12	0.45	-0.6
8,356	+		GFF12	0.45	-0.2
8,356	+		GFF12	0.45	+0.9
8,356	+		GFF12	0.45	-1.8
8,356	+		GFF12	0.45	-2.3
8,364	-		GFF12	0.46	-1.6
8,364	-		GFF12	0.46	-1.2
8,364	-		GFF12	0.46	-0.1
8,364	-		GFF12	0.46	-1.8
8,372	-		GFF12	0.47	-0.3
8,425	-		GFF12	0.51	+1.5
8,444	+		GFF12	0.52	+0.7
8,444	+		GFF12	0.52	-0.6
8,457	-		GFF12	0.53	+0.2
8,471	+		GFF12	0.55	-0.9
8,490	-		GFF12	0.56	-0.5
8,490	-		GFF12	0.56	-0.9
8,507	-		GFF12	0.58	-0.5
8,517	+		GFF12	0.58	-0.2
8,520	-		GFF12	0.59	+0.6
8,536	+		GFF12	0.60	-1.2
8,544	-		GFF12	0.61	+0.8
8,544	-		GFF12	0.61	-0.5
8,555	-		GFF12	0.61	-0.3
8,566	+		GFF12	0.62	-1.5
8,566	+		GFF12	0.62	-1.5
8,573	+		GFF12	0.63	-0.2
8,574	-		GFF12	0.63	-0.3
8,574	-		GFF12	0.63	-1.1
8,583	+		GFF12	0.64	-0.4
8,589	-		GFF12	0.64	-1.5
8,589	-		GFF12	0.64	+0.0
8,615	-		GFF12	0.66	-0.4
8,671	+		GFF12	0.71	-0.9
8,673	-		GFF12	0.71	+0.9
8,690	+		GFF12	0.72	-1.2
8,695	+		GFF12	0.73	+1.9
8,695	+		GFF12	0.73	+1.2
8,697	+		GFF12	0.73	+0.6
8,697	+		GFF12	0.73	-0.5
8,698	-		GFF12	0.73	-1.1
8,698	-		GFF12	0.73	-1.0
8,703	-		GFF12	0.73	-1.1
8,706	+		GFF12	0.74	+0.0
8,706	+		GFF12	0.74	-1.1
8,714	-		GFF12	0.74	+0.7
8,716	+		GFF12	0.74	-1.0
8,719	-		GFF12	0.75	+0.5
8,737	+		GFF12	0.76	-0.5
8,737	+		GFF12	0.76	-0.5
8,737	+		GFF12	0.76	-0.7
8,745	-		GFF12	0.77	+1.2
8,745	-		GFF12	0.77	+0.6
8,745	-		GFF12	0.77	-0.0
8,745	-		GFF12	0.77	-1.3
8,745	-		GFF12	0.77	+0.9
8,773	+		GFF12	0.79	-0.0
8,781	-		GFF12	0.80	-0.4