Strain Fitness in Sphingobium sp. HT1-2 around GFF1099

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,099,079	-				+0.9
1,099,107	+				-1.1
1,099,107	+				-1.1
1,099,115	-		GFF1096	0.11	-1.7
1,099,121	-		GFF1096	0.13	-1.5
1,099,153	-		GFF1096	0.24	+0.6
1,099,170	+		GFF1096	0.30	-0.2
1,099,170	+		GFF1096	0.30	+0.5
1,099,176	+		GFF1096	0.32	-0.4
1,099,178	-		GFF1096	0.33	+0.2
1,099,178	-		GFF1096	0.33	+1.0
1,099,178	-		GFF1096	0.33	-1.8
1,099,183	-		GFF1096	0.34	+0.3
1,099,199	-		GFF1096	0.40	+0.2
1,099,200	+		GFF1096	0.40	-0.5
1,099,213	-		GFF1096	0.45	+1.1
1,099,222	+		GFF1096	0.48	-0.0
1,099,222	+		GFF1096	0.48	+0.6
1,099,222	+		GFF1096	0.48	-1.1
1,099,222	+		GFF1096	0.48	-1.3
1,099,222	-		GFF1096	0.48	-1.1
1,099,230	-		GFF1096	0.51	-0.9
1,099,232	+		GFF1096	0.51	-0.2
1,099,232	+		GFF1096	0.51	-1.0
1,099,244	+		GFF1096	0.56	-1.9
1,099,256	-		GFF1096	0.60	-0.3
1,099,265	+		GFF1096	0.63	-0.9
1,099,265	+		GFF1096	0.63	-1.3
1,099,265	+		GFF1096	0.63	+0.1
1,099,265	+		GFF1096	0.63	+0.6
1,099,265	+		GFF1096	0.63	+0.4
1,099,265	+		GFF1096	0.63	+0.3
1,099,265	+		GFF1096	0.63	-0.9
1,099,265	+		GFF1096	0.63	+0.6
1,099,267	+		GFF1096	0.64	+0.6
1,099,273	-		GFF1096	0.66	+0.3
1,099,273	-		GFF1096	0.66	-0.4
1,099,273	-		GFF1096	0.66	+1.1
1,099,273	-		GFF1096	0.66	+2.4
1,099,273	-		GFF1096	0.66	-0.7
1,099,273	-		GFF1096	0.66	-1.6
1,099,273	-		GFF1096	0.66	-0.3
1,099,273	-		GFF1096	0.66	-0.1
1,099,275	-		GFF1096	0.66	+0.7
1,099,275	-		GFF1096	0.66	-0.7
1,099,283	+		GFF1096	0.69	-0.8
1,099,289	+		GFF1096	0.71	-2.2
1,099,308	+		GFF1096	0.78	-0.9
1,099,308	+		GFF1096	0.78	-0.1
1,099,316	-		GFF1096	0.81	-0.4
1,099,321	-		GFF1096	0.82	-0.1
1,099,344	+				-1.1
1,099,357	+				-0.6
1,099,360	+				-0.9
1,099,363	-				-0.8
1,099,364	+				-0.1
1,099,365	-				-0.6
1,099,370	-				-0.3
1,099,374	+				-0.4
1,099,381	+				-1.0
1,099,381	+				+0.5
1,099,381	+				-2.1
1,099,382	-				-0.8
1,099,389	-				-0.0
1,099,389	-				-1.2
1,099,389	-				+0.3
1,099,389	-				-0.3
1,099,389	-				-0.8
1,099,389	-				-0.3
1,099,412	-				-1.5
1,099,419	+				-1.9
1,099,427	-				+0.8
1,099,450	+		GFF1097	0.11	-0.3
1,099,452	+		GFF1097	0.12	-1.0
1,099,452	+		GFF1097	0.12	-0.7
1,099,475	+		GFF1097	0.21	+0.4
1,099,475	+		GFF1097	0.21	-1.0
1,099,478	-		GFF1097	0.22	-1.6
1,099,478	-		GFF1097	0.22	-2.0
1,099,478	-		GFF1097	0.22	-0.6
1,099,483	-		GFF1097	0.24	-1.0
1,099,483	-		GFF1097	0.24	-2.3
1,099,483	-		GFF1097	0.24	-1.2
1,099,483	-		GFF1097	0.24	-1.7
1,099,483	-		GFF1097	0.24	+0.3
1,099,483	-		GFF1097	0.24	-0.6
1,099,488	-		GFF1097	0.26	+0.0
1,099,489	-		GFF1097	0.26	-2.3
1,099,495	-		GFF1097	0.29	-0.3
1,099,495	-		GFF1097	0.29	-0.7
1,099,502	+		GFF1097	0.31	-1.1
1,099,502	+		GFF1097	0.31	-0.4
1,099,502	+		GFF1097	0.31	-2.2
1,099,502	+		GFF1097	0.31	+2.4
1,099,502	+		GFF1097	0.31	+1.0
1,099,502	+		GFF1097	0.31	-1.3
1,099,502	+		GFF1097	0.31	-0.4
1,099,502	+		GFF1097	0.31	-1.1
1,099,502	+		GFF1097	0.31	-1.8
1,099,510	-		GFF1097	0.35	-1.3
1,099,510	-		GFF1097	0.35	-0.7
1,099,510	-		GFF1097	0.35	-0.1
1,099,510	-		GFF1097	0.35	-0.2
1,099,510	-		GFF1097	0.35	-1.2
1,099,517	+		GFF1097	0.37	+0.3
1,099,525	-		GFF1097	0.40	-1.3
1,099,525	-		GFF1097	0.40	+0.8
1,099,534	+		GFF1097	0.44	-0.7
1,099,534	+		GFF1097	0.44	-0.8
1,099,541	+		GFF1097	0.47	-0.1
1,099,542	-		GFF1097	0.47	+1.3
1,099,542	-		GFF1097	0.47	-0.4
1,099,542	-		GFF1097	0.47	+1.1
1,099,549	-		GFF1097	0.50	+0.3
1,099,549	-		GFF1097	0.50	+0.4
1,099,554	-		GFF1097	0.52	-0.7
1,099,567	+		GFF1097	0.57	+0.3
1,099,579	-		GFF1097	0.62	-0.1
1,099,584	-		GFF1097	0.64	-0.0
1,099,612	+		GFF1097	0.75	-1.2
1,099,612	+		GFF1097	0.75	-0.6
1,099,612	+		GFF1097	0.75	-0.6
1,099,612	+		GFF1097	0.75	+0.4
1,099,612	+		GFF1097	0.75	+0.4
1,099,612	+		GFF1097	0.75	+0.9
1,099,620	-		GFF1097	0.78	+1.3
1,099,620	-		GFF1097	0.78	+1.0
1,099,620	-		GFF1097	0.78	-2.1
1,099,620	-		GFF1097	0.78	-1.0
1,099,620	-		GFF1097	0.78	-0.5
1,099,620	-		GFF1097	0.78	+0.2
1,099,620	-		GFF1097	0.78	-0.5
1,099,620	-		GFF1097	0.78	-0.3
1,099,633	+		GFF1097	0.83	-0.2
1,099,633	+		GFF1097	0.83	+0.9
1,099,633	+		GFF1097	0.83	+0.1
1,099,633	+		GFF1097	0.83	+0.1
1,099,638	+		GFF1097	0.85	-1.2
1,099,638	+		GFF1097	0.85	+0.1
1,099,641	-		GFF1097	0.86	-1.1
1,099,641	-		GFF1097	0.86	+0.8
1,099,646	-		GFF1097	0.88	+0.2
1,099,651	+				-1.5
1,099,656	+				-0.3
1,099,660	+				-1.2
1,099,660	+				-2.3
1,099,664	-				+0.7
1,099,664	-				-0.1
1,099,686	+				-0.4
1,099,688	+				-0.3
1,099,694	-				-1.1
1,099,705	+				+0.0
1,099,708	-		GFF1098	0.11	+0.4
1,099,708	-		GFF1098	0.11	-0.1
1,099,727	-		GFF1098	0.21	+0.7
1,099,746	-		GFF1098	0.32	+0.5
1,099,748	+		GFF1098	0.33	-1.1
1,099,755	+		GFF1098	0.37	-0.8
1,099,801	+		GFF1098	0.62	-1.2
1,099,801	+		GFF1098	0.62	-1.4
1,099,801	+		GFF1098	0.62	-0.6
1,099,809	-		GFF1098	0.67	-0.7
1,099,810	+		GFF1098	0.67	-0.8
1,099,818	-		GFF1098	0.72	-1.0
1,099,824	+		GFF1098	0.75	-1.6
1,099,830	+		GFF1098	0.78	+0.7
1,099,832	-		GFF1098	0.79	+0.3
1,099,838	-		GFF1098	0.83	+0.3
1,099,869	-				+0.5
1,099,897	+				+0.5
1,099,901	-				-0.4
1,099,903	-				+1.0
1,099,915	+				-1.4
1,099,946	-				-0.9
1,099,963	+				-0.4
1,099,963	-				-0.6
1,099,970	+				-1.3
1,099,971	-				-0.7
1,100,045	+				+0.6
1,100,045	+				-0.8
1,100,045	+				-0.8
1,100,045	+				-1.0
1,100,045	+				-0.4
1,100,053	-				-2.2
1,100,053	-				-1.5
1,100,053	-				+2.3
1,100,053	-				-0.2
1,100,063	-				-0.5
1,100,063	-				+2.1
1,100,067	+				+0.6
1,100,109	+		GFF1099	0.33	-0.8
1,100,111	+		GFF1099	0.34	-0.8
1,100,116	+		GFF1099	0.38	-1.1
1,100,123	+		GFF1099	0.43	-0.7
1,100,124	-		GFF1099	0.44	+0.4
1,100,124	-		GFF1099	0.44	-1.6
1,100,131	-		GFF1099	0.49	-1.8
1,100,138	+		GFF1099	0.55	-0.1
1,100,205	-				-0.5
1,100,205	-				+0.4
1,100,246	+				-0.8
1,100,255	+				-1.1
1,100,263	-				-1.0
1,100,263	-				-0.4
1,100,263	-				-0.9
1,100,272	+				-0.4
1,100,329	+				-1.3
1,100,329	+				+0.2
1,100,341	+				-1.7
1,100,342	-				-0.6
1,100,347	-				-1.2
1,100,347	-				-0.3
1,100,352	+				-1.5
1,100,352	+				+0.4
1,100,358	+				-0.3
1,100,366	-				+0.3
1,100,385	-				-0.2
1,100,387	-				+1.0
1,100,389	+				-0.7
1,100,389	+				-1.2
1,100,389	+				-1.1
1,100,389	+				+1.4
1,100,394	+				-0.1
1,100,397	-				-0.2
1,100,397	-				+0.2
1,100,405	-				-0.4
1,100,411	+				+2.0
1,100,418	+				+1.4
1,100,418	+				-1.3
1,100,419	-				-0.7
1,100,436	-				-1.1
1,100,444	+				-0.6
1,100,444	+				+0.1
1,100,444	+				-1.1
1,100,445	+				+0.3
1,100,445	+				-0.6
1,100,445	+				+1.3
1,100,445	+				-1.2
1,100,445	+				+0.9
1,100,452	+				+1.3
1,100,452	+				+0.4
1,100,452	-				-0.0
1,100,452	-				-0.4
1,100,452	-				+0.3
1,100,453	-				-0.8
1,100,453	-				-0.1
1,100,453	-				-0.2
1,100,453	-				+0.8
1,100,453	-				-1.1
1,100,453	-				+0.4
1,100,453	-				-0.3
1,100,453	-				+0.5
1,100,453	-				-1.4
1,100,455	+				-1.1
1,100,457	+				-0.8
1,100,464	+				+0.3
1,100,464	+				-0.7
1,100,464	+				-0.4
1,100,465	-				-0.9
1,100,471	+				-1.0
1,100,472	-				-0.1
1,100,472	-				-0.9
1,100,472	-				-0.4
1,100,472	-				+0.1
1,100,472	-				-0.3
1,100,498	-				+1.4
1,100,532	+				-0.4
1,100,532	+				-1.0
1,100,551	+				-0.3
1,100,556	+				+0.6
1,100,559	-				-0.1
1,100,559	-				+0.6
1,100,559	-				-0.6
1,100,570	+				-1.4
1,100,570	+				-0.7
1,100,577	+				-1.4
1,100,578	-				-0.3
1,100,590	+				+0.1
1,100,590	+				-1.4
1,100,593	-				-0.7
1,100,594	+				+0.6
1,100,594	+				-1.6
1,100,611	+				-1.2
1,100,611	+				-1.1
1,100,619	-				+0.7
1,100,619	-				-0.6
1,100,619	-				+1.5
1,100,634	+				+0.6
1,100,635	+				-0.2
1,100,642	-				-0.3
1,100,660	-				-1.1
1,100,671	+				+0.3
1,100,671	+				+0.0
1,100,671	+				-0.9
1,100,671	+				-0.2
1,100,671	+				-1.2
1,100,679	-				+0.6
1,100,679	-				-0.3
1,100,688	+				+0.8
1,100,688	+				-2.1
1,100,688	+				-0.8
1,100,688	+				-0.6
1,100,688	+				-0.4
1,100,688	+				-0.8
1,100,688	+				-0.2
1,100,688	+				+0.5
1,100,688	+				+0.1
1,100,692	+				+0.5
1,100,696	-				+0.0
1,100,696	-				-1.3
1,100,696	-				+0.4
1,100,696	-				-0.6
1,100,700	-				-1.1
1,100,710	-				+0.4
1,100,725	+				-0.2
1,100,729	+				+0.2
1,100,732	-				+0.7
1,100,736	+				+0.7
1,100,742	+				-0.7
1,100,742	+				-0.2
1,100,742	+				-1.9
1,100,742	+				-0.8
1,100,742	+				-0.5
1,100,742	+				-0.6
1,100,742	+				+0.7
1,100,750	-				+0.9
1,100,751	-				-0.3
1,100,755	-				+0.8
1,100,756	-				-1.1
1,100,769	+				-0.2
1,100,771	+				+0.2
1,100,771	+				-1.3
1,100,771	+				+0.4
1,100,771	+				-1.1
1,100,771	+				-1.7
1,100,776	+				+0.6
1,100,776	+				-1.1
1,100,777	+				-2.4
1,100,779	-				-1.1
1,100,779	-				-1.0
1,100,779	-				+0.5
1,100,779	-				+2.4
1,100,779	-				-0.2
1,100,779	-				-0.5
1,100,783	+				-0.9
1,100,783	+				-1.4
1,100,783	+				-0.2
1,100,783	+				+0.7
1,100,783	+				-1.3
1,100,791	-		GFF1100	0.11	+0.2
1,100,791	-		GFF1100	0.11	-1.3
1,100,792	+		GFF1100	0.11	-0.8
1,100,792	+		GFF1100	0.11	+1.0
1,100,795	-		GFF1100	0.12	+0.2
1,100,801	-		GFF1100	0.12	-1.5
1,100,803	-		GFF1100	0.13	+0.5
1,100,805	+		GFF1100	0.13	+0.5
1,100,808	-		GFF1100	0.14	-0.4
1,100,830	+		GFF1100	0.17	-0.5
1,100,830	+		GFF1100	0.17	-1.1
1,100,830	+		GFF1100	0.17	-1.3
1,100,838	-		GFF1100	0.19	+0.0
1,100,838	-		GFF1100	0.19	+0.3
1,100,838	-		GFF1100	0.19	-0.3
1,100,838	-		GFF1100	0.19	-0.2
1,100,838	-		GFF1100	0.19	-0.6
1,100,843	-		GFF1100	0.20	-0.1
1,100,843	-		GFF1100	0.20	+0.7
1,100,843	-		GFF1100	0.20	-0.6
1,100,845	+		GFF1100	0.20	-0.7
1,100,878	-		GFF1100	0.25	-0.9
1,100,878	-		GFF1100	0.25	+0.2
1,100,882	-		GFF1100	0.26	+0.0
1,100,899	+		GFF1100	0.29	-1.3
1,100,902	-		GFF1100	0.29	+1.4
1,100,917	+		GFF1100	0.32	-0.8
1,100,917	+		GFF1100	0.32	-1.3
1,100,917	+		GFF1100	0.32	-1.0
1,100,928	+		GFF1100	0.34	-0.6
1,100,951	+		GFF1100	0.38	-0.2
1,100,972	+		GFF1100	0.41	-0.1
1,100,972	+		GFF1100	0.41	-1.2
1,100,978	-		GFF1100	0.42	-1.3
1,100,980	-		GFF1100	0.42	-1.4
1,100,980	-		GFF1100	0.42	-0.7
1,100,991	-		GFF1100	0.44	+0.2
1,101,008	+		GFF1100	0.47	-0.5
1,101,058	+		GFF1100	0.55	+0.8
1,101,058	+		GFF1100	0.55	+1.0
1,101,066	-		GFF1100	0.57	-0.3
1,101,068	+		GFF1100	0.57	-0.3
1,101,112	+		GFF1100	0.64	-0.4
1,101,122	+		GFF1100	0.66	+0.6
1,101,122	+		GFF1100	0.66	+0.6
1,101,135	+		GFF1100	0.68	-0.6
1,101,135	+		GFF1100	0.68	-0.9
1,101,135	+		GFF1100	0.68	-0.6
1,101,135	+		GFF1100	0.68	-0.4
1,101,135	+		GFF1100	0.68	-1.5
1,101,140	+		GFF1100	0.69	-0.4
1,101,143	-		GFF1100	0.69	-0.5
1,101,153	-		GFF1100	0.71	-1.7
1,101,154	-		GFF1100	0.71	+0.1
1,101,182	-		GFF1100	0.76	-0.9
1,101,191	+		GFF1100	0.78	-1.8