Strain Fitness in Sphingobium sp. HT1-2 around GFF1071

Experiment: EMM_noCarbon with Sucrose and Ammonium Sulfate

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Ammonium Sulfate
1,078,573	+				-0.7
1,078,576	-				+1.3
1,078,581	-				+0.1
1,078,586	+				-0.8
1,078,591	+				-0.5
1,078,594	-				+0.7
1,078,596	+				+1.2
1,078,602	+				-1.4
1,078,625	+				-1.3
1,078,633	-				-0.4
1,078,639	-				-1.3
1,078,658	+				-0.2
1,078,702	-				-1.0
1,078,708	+				-0.6
1,078,708	+				+0.1
1,078,708	+				-1.8
1,078,708	+				+0.3
1,078,708	+				+0.4
1,078,708	+				-1.5
1,078,708	+				-0.1
1,078,713	+				+0.9
1,078,716	-				-1.1
1,078,716	-				-1.1
1,078,716	-				+0.2
1,078,716	-				-0.1
1,078,716	-				+1.7
1,078,716	-				-1.3
1,078,716	-				-0.6
1,078,716	-				-0.5
1,078,716	-				-0.3
1,078,716	-				+0.5
1,078,716	-				+0.1
1,078,743	-				-0.6
1,078,756	-		GFF1071	0.11	-0.9
1,078,761	-		GFF1071	0.11	+0.3
1,078,767	+		GFF1071	0.12	-0.3
1,078,777	+		GFF1071	0.12	-0.4
1,078,777	+		GFF1071	0.12	+0.9
1,078,777	+		GFF1071	0.12	-0.6
1,078,785	-		GFF1071	0.13	+0.4
1,078,785	-		GFF1071	0.13	+0.8
1,078,785	-		GFF1071	0.13	+2.1
1,078,785	-		GFF1071	0.13	-0.4
1,078,785	-		GFF1071	0.13	+1.3
1,078,785	-		GFF1071	0.13	-0.9
1,078,785	-		GFF1071	0.13	-0.6
1,078,785	-		GFF1071	0.13	-1.1
1,078,785	-		GFF1071	0.13	-0.1
1,078,786	+		GFF1071	0.13	-0.7
1,078,787	+		GFF1071	0.13	+1.3
1,078,796	-		GFF1071	0.14	+1.2
1,078,804	-		GFF1071	0.14	-1.1
1,078,811	-		GFF1071	0.15	+1.1
1,078,813	+		GFF1071	0.15	+0.3
1,078,821	-		GFF1071	0.16	-0.6
1,078,827	+		GFF1071	0.16	-1.2
1,078,827	+		GFF1071	0.16	+0.4
1,078,881	-		GFF1071	0.20	+0.8
1,078,892	+		GFF1071	0.21	-0.8
1,078,913	+		GFF1071	0.23	-0.6
1,078,920	+		GFF1071	0.23	-0.3
1,078,920	+		GFF1071	0.23	+0.6
1,078,928	-		GFF1071	0.24	-0.6
1,078,951	-		GFF1071	0.25	-0.2
1,078,951	-		GFF1071	0.25	-0.6
1,078,951	-		GFF1071	0.25	-0.7
1,078,958	+		GFF1071	0.26	-0.2
1,078,980	+		GFF1071	0.28	-1.4
1,078,980	+		GFF1071	0.28	-2.2
1,078,980	+		GFF1071	0.28	+0.3
1,078,988	-		GFF1071	0.28	-1.0
1,078,988	-		GFF1071	0.28	-1.1
1,078,988	-		GFF1071	0.28	-1.7
1,078,988	-		GFF1071	0.28	-1.3
1,079,003	-		GFF1071	0.29	-0.1
1,079,003	-		GFF1071	0.29	+0.3
1,079,021	-		GFF1071	0.31	+0.4
1,079,028	-		GFF1071	0.31	-0.4
1,079,043	-		GFF1071	0.32	-0.1
1,079,043	-		GFF1071	0.32	-0.4
1,079,046	+		GFF1071	0.33	-0.7
1,079,046	+		GFF1071	0.33	+0.0
1,079,054	-		GFF1071	0.33	-0.9
1,079,054	-		GFF1071	0.33	+0.3
1,079,054	-		GFF1071	0.33	-1.6
1,079,122	+		GFF1071	0.38	+0.4
1,079,127	+		GFF1071	0.39	-0.4
1,079,135	-		GFF1071	0.39	-0.2
1,079,135	-		GFF1071	0.39	-1.0
1,079,153	+		GFF1071	0.41	+0.4
1,079,157	-		GFF1071	0.41	-0.4
1,079,165	-		GFF1071	0.41	-0.6
1,079,171	+		GFF1071	0.42	+0.6
1,079,172	+		GFF1071	0.42	+0.1
1,079,184	-		GFF1071	0.43	-1.3
1,079,184	-		GFF1071	0.43	-0.1
1,079,201	+		GFF1071	0.44	-0.4
1,079,202	-		GFF1071	0.44	-1.6
1,079,248	-		GFF1071	0.48	-0.7
1,079,280	+		GFF1071	0.50	+0.7
1,079,280	+		GFF1071	0.50	-0.3
1,079,280	+		GFF1071	0.50	-0.2
1,079,288	-		GFF1071	0.51	-0.2
1,079,335	+		GFF1071	0.54	-1.0
1,079,338	-		GFF1071	0.54	-0.7
1,079,343	+		GFF1071	0.55	-1.7
1,079,343	+		GFF1071	0.55	-1.1
1,079,369	-		GFF1071	0.57	-0.6
1,079,376	+		GFF1071	0.57	-1.1
1,079,379	-		GFF1071	0.58	-0.7
1,079,384	-		GFF1071	0.58	+0.7
1,079,404	+		GFF1071	0.59	-1.3
1,079,404	-		GFF1071	0.59	-0.3
1,079,412	-		GFF1071	0.60	-1.7
1,079,427	+		GFF1071	0.61	-1.4
1,079,427	+		GFF1071	0.61	+0.3
1,079,443	-		GFF1071	0.62	+0.7
1,079,448	+		GFF1071	0.63	+0.9
1,079,457	+		GFF1071	0.63	-0.1
1,079,497	+		GFF1071	0.66	+0.1
1,079,497	+		GFF1071	0.66	+1.1
1,079,505	-		GFF1071	0.67	-0.8
1,079,511	-		GFF1071	0.67	+0.4
1,079,519	-		GFF1071	0.68	+0.2
1,079,528	-		GFF1071	0.69	-0.9
1,079,536	+		GFF1071	0.69	-0.3
1,079,541	+		GFF1071	0.70	+0.9
1,079,544	-		GFF1071	0.70	+0.7
1,079,544	-		GFF1071	0.70	+0.7
1,079,544	-		GFF1071	0.70	+0.6
1,079,546	+		GFF1071	0.70	+0.7
1,079,549	-		GFF1071	0.70	-0.8
1,079,549	-		GFF1071	0.70	-0.7
1,079,554	-		GFF1071	0.71	-1.1
1,079,601	-		GFF1071	0.74	-0.6
1,079,603	+		GFF1071	0.74	-0.7
1,079,620	+		GFF1071	0.76	-2.1
1,079,620	+		GFF1071	0.76	-1.2
1,079,631	-		GFF1071	0.76	-1.0
1,079,638	+		GFF1071	0.77	+1.6
1,079,638	+		GFF1071	0.77	-1.2
1,079,638	+		GFF1071	0.77	+0.3
1,079,638	+		GFF1071	0.77	-0.7
1,079,648	+		GFF1071	0.78	-1.6
1,079,660	-		GFF1071	0.79	-1.3
1,079,672	-		GFF1071	0.79	+1.2
1,079,674	+		GFF1071	0.80	-0.1
1,079,677	-		GFF1071	0.80	-1.3
1,079,677	-		GFF1071	0.80	+0.9
1,079,679	+		GFF1071	0.80	+0.4
1,079,682	-		GFF1071	0.80	-0.8
1,079,687	-		GFF1071	0.81	-1.3
1,079,715	+		GFF1071	0.83	+0.2
1,079,715	+		GFF1071	0.83	-2.2
1,079,722	+		GFF1071	0.83	-1.0
1,079,748	-		GFF1071	0.85	-0.3
1,079,748	-		GFF1071	0.85	-0.7
1,079,799	+		GFF1071	0.89	-1.4
1,079,827	-				+0.0
1,079,834	+				+0.0
1,079,834	+				-0.8
1,079,842	-				-1.1
1,079,842	-				+0.8
1,079,842	-				-2.0
1,079,842	-				-1.0
1,079,842	-				-1.8
1,079,859	+				-0.4
1,079,864	+				-0.6
1,079,866	-				-0.3
1,079,867	-				-1.5
1,079,874	-				+0.6
1,079,874	-				-0.7
1,079,900	-				+0.8
1,079,914	+				-0.1
1,079,914	+				-0.2
1,079,914	+				-0.2
1,079,928	-				+0.5
1,079,946	+				-1.7
1,079,954	+				-1.0
1,079,954	+				+0.6
1,079,956	-				-0.4
1,079,959	+				-0.3
1,079,962	-				+1.0
1,079,962	-				+1.2
1,079,968	-				-0.9
1,079,983	+				-0.3
1,079,991	-				-1.7
1,080,012	-				+0.2
1,080,013	-				-0.6
1,080,073	+		GFF1072	0.17	+0.8
1,080,073	-		GFF1072	0.17	+0.4
1,080,080	+		GFF1072	0.18	-0.1
1,080,080	+		GFF1072	0.18	-1.7
1,080,088	+		GFF1072	0.20	-0.9
1,080,089	-		GFF1072	0.20	-2.3
1,080,089	-		GFF1072	0.20	-0.4
1,080,090	+		GFF1072	0.20	+0.2
1,080,090	+		GFF1072	0.20	-1.0
1,080,090	+		GFF1072	0.20	+0.9
1,080,094	+		GFF1072	0.21	-0.8
1,080,098	-		GFF1072	0.21	+0.8
1,080,098	-		GFF1072	0.21	+0.3
1,080,102	-		GFF1072	0.22	-0.7
1,080,121	+		GFF1072	0.25	-1.1
1,080,134	-		GFF1072	0.27	-0.1
1,080,162	-		GFF1072	0.31	-0.6
1,080,165	+		GFF1072	0.32	-0.7
1,080,165	+		GFF1072	0.32	-0.1
1,080,165	+		GFF1072	0.32	+0.2
1,080,171	+		GFF1072	0.33	-1.3
1,080,171	+		GFF1072	0.33	-1.2
1,080,171	+		GFF1072	0.33	+0.4
1,080,171	+		GFF1072	0.33	+1.2
1,080,171	+		GFF1072	0.33	-1.8
1,080,171	+		GFF1072	0.33	-0.7
1,080,171	+		GFF1072	0.33	-1.8
1,080,171	+		GFF1072	0.33	-1.9
1,080,177	+		GFF1072	0.34	-2.0
1,080,179	-		GFF1072	0.34	-0.5
1,080,190	-		GFF1072	0.36	-1.3
1,080,200	+		GFF1072	0.37	-0.8
1,080,202	-		GFF1072	0.38	-0.7
1,080,202	-		GFF1072	0.38	+0.0
1,080,202	-		GFF1072	0.38	-0.7
1,080,207	+		GFF1072	0.38	+0.3
1,080,208	-		GFF1072	0.39	-2.0
1,080,208	-		GFF1072	0.39	-0.1
1,080,213	-		GFF1072	0.39	-0.7
1,080,213	-		GFF1072	0.39	+0.7
1,080,219	+		GFF1072	0.40	-0.9
1,080,227	-		GFF1072	0.42	-0.2
1,080,227	-		GFF1072	0.42	+0.6
1,080,227	-		GFF1072	0.42	-0.7
1,080,234	+		GFF1072	0.43	-1.7
1,080,261	+		GFF1072	0.47	+0.6
1,080,339	+		GFF1072	0.59	-0.8
1,080,339	+		GFF1072	0.59	-1.7
1,080,339	+		GFF1072	0.59	+0.3
1,080,339	+		GFF1072	0.59	-0.4
1,080,347	-		GFF1072	0.60	-1.0
1,080,349	+		GFF1072	0.61	-0.0
1,080,356	-		GFF1072	0.62	-0.6
1,080,370	-		GFF1072	0.64	-1.0
1,080,384	+		GFF1072	0.66	-1.3
1,080,386	+		GFF1072	0.67	+0.2
1,080,391	+		GFF1072	0.67	-1.3
1,080,391	+		GFF1072	0.67	+0.7
1,080,396	+		GFF1072	0.68	-0.2
1,080,396	+		GFF1072	0.68	-1.2
1,080,397	-		GFF1072	0.68	-0.9
1,080,404	-		GFF1072	0.69	-0.7
1,080,404	-		GFF1072	0.69	+1.4
1,080,404	-		GFF1072	0.69	+0.8
1,080,404	-		GFF1072	0.69	-0.7
1,080,418	+		GFF1072	0.72	-0.4
1,080,418	+		GFF1072	0.72	-0.7
1,080,426	-		GFF1072	0.73	+1.1
1,080,431	-		GFF1072	0.74	-0.1
1,080,469	+		GFF1072	0.80	-0.2
1,080,479	+		GFF1072	0.81	-0.6
1,080,487	-		GFF1072	0.82	+1.4
1,080,495	+		GFF1072	0.84	-0.5
1,080,498	-		GFF1072	0.84	+1.0
1,080,498	-		GFF1072	0.84	-1.5
1,080,498	-		GFF1072	0.84	+0.0
1,080,503	-		GFF1072	0.85	-1.3
1,080,503	-		GFF1072	0.85	-1.9
1,080,521	+		GFF1072	0.88	+0.6
1,080,525	+		GFF1072	0.88	-0.1
1,080,535	-				-0.3
1,080,538	+				-0.9
1,080,540	+				-0.8
1,080,545	+				+1.3
1,080,546	-				-0.9
1,080,553	-				+0.4
1,080,557	+				+0.3
1,080,563	+				-0.9
1,080,563	+				-0.9
1,080,571	+				-1.4
1,080,573	-				-0.8
1,080,581	+				+0.8
1,080,589	-				+0.2
1,080,589	-				+0.1
1,080,596	-				-0.7
1,080,611	-				-1.8
1,080,618	-				-1.1
1,080,627	+				-1.4
1,080,627	+				-0.9
1,080,635	+				-0.3
1,080,643	-				-0.3
1,080,647	+				+1.5
1,080,651	+				+0.3
1,080,655	-				+1.6
1,080,655	-				+0.3
1,080,657	+				-0.6
1,080,659	-				-0.2
1,080,665	-				-0.1
1,080,679	+				+0.1
1,080,681	-				-2.1
1,080,687	-				-0.8
1,080,687	-				-0.3
1,080,694	+				+0.4
1,080,707	+		GFF1073	0.12	-1.4
1,080,709	+		GFF1073	0.12	-0.4
1,080,709	+		GFF1073	0.12	+0.8
1,080,716	+		GFF1073	0.14	-0.4
1,080,717	-		GFF1073	0.14	-0.7
1,080,717	-		GFF1073	0.14	-0.4
1,080,717	-		GFF1073	0.14	-0.4
1,080,722	-		GFF1073	0.15	-0.8
1,080,748	-		GFF1073	0.19	-0.6
1,080,766	+		GFF1073	0.22	-0.2
1,080,786	+		GFF1073	0.26	+0.1
1,080,814	-		GFF1073	0.31	-0.1
1,080,814	-		GFF1073	0.31	-0.8
1,080,826	+		GFF1073	0.33	+1.2
1,080,827	+		GFF1073	0.33	-0.5
1,080,827	+		GFF1073	0.33	-1.3
1,080,834	-		GFF1073	0.34	-0.4
1,080,834	-		GFF1073	0.34	-1.7
1,080,834	-		GFF1073	0.34	+1.6
1,080,840	-		GFF1073	0.35	+0.8
1,080,885	+		GFF1073	0.43	+1.0
1,080,893	+		GFF1073	0.44	-1.2
1,080,893	-		GFF1073	0.44	+1.7
1,080,893	-		GFF1073	0.44	+1.4
1,080,893	-		GFF1073	0.44	-1.8
1,080,893	-		GFF1073	0.44	-0.7
1,080,893	-		GFF1073	0.44	-1.6
1,080,893	-		GFF1073	0.44	-0.8
1,080,910	+		GFF1073	0.47	+1.1
1,080,931	+		GFF1073	0.51	-0.2
1,080,939	-		GFF1073	0.52	-0.9